Projet_choléra_jeudi_matin.nlogo

patches-own [ 
  lifetime-patch
  ]

breed [ viruses virus]
breed [ houses house ]

viruses-own [ 
  lifetime
   ]

to setup
  
  clear-all
  random-seed 10005
  reset-ticks
  initialize
  
end


to initialize
  
  ask patches[
    set pcolor green
    if  ((pxcor - 1) mod ( 10 - taille_ville )) = 0 or ((pxcor + 1) mod ( 10 - taille_ville )) = 0 or ((pycor - 1) mod ( 10 - taille_ville ) ) = 0 or ((pycor + 1) mod ( 10 - taille_ville )) = 0 [
     set pcolor black 
    ]
    if  (pxcor mod ( 10 - taille_ville )) = 0 or (pycor mod ( 10 - taille_ville )) = 0 [
     set pcolor blue 
    ]
  ]
  create-viruses 1
  ask viruses [
    setxy 0 0 
    set color black
    set shape "fish"
  ]
   
end

to set-houses [ x y ]
  
  create-houses 1 [ 
    setxy x y
    set shape "house"
    set size 2
  ]
  
end

to go
  
  tick
  ask viruses[ 
    move
    contaminate
    ]
   immunize
   mutate
   contagion
   stop-virus
   
;   if ((count patches with [ pcolor = yellow ]) / (count patches with [ pcolor = yellow or pcolor = black ])) * 100 > 75 [
;   stop 
;  ] 
  if not any? viruses [ stop ]
 
end

to move
  
  let destination one-of neighbors with [pcolor = blue  ]
  move-to destination
  
end

to contaminate
  
  ask neighbors4 [
      if pcolor = black [
       let i random-float 1
       if i <= alpha [
         set pcolor yellow
       ]  
     ] 
   ]  
end

to contagion
  
  let bluePatch one-of patches with [pcolor = blue]
  if any? patches with [pcolor = yellow] 
  [ set bluePatch one-of patches with [pcolor = blue and count neighbors4 with [ pcolor = yellow ] > 0 ]]
  let number-of-contamined count patches with [ pcolor = yellow ]
  let t 0
  while [t < number-of-contamined ]  [  
  let i random-float 1
  if i <= beta [
  create-viruses 1 [
    setxy [pxcor] of bluePatch [pycor] of bluePatch 
    set color black 
    set shape "fish"]
  ]
  set t t + 1
  ]
  
end

to stop-virus
  
  ask viruses with [color = black] [
    set lifetime lifetime + 1
    if lifetime > (100 / (treatment-level * treatment-level)) [die]]
  
end

to immunize

  ask patches with [ pcolor = yellow ][
  set lifetime-patch lifetime-patch + 1
  if lifetime-patch > 200 / immunity [  set pcolor white
    ]
  ]
end

to mutate

  ask patches with [ pcolor = white ][
  set lifetime-patch lifetime-patch + 1
  if lifetime-patch > immunity * 80 [    set pcolor black
    set lifetime-patch 0
    ]
  ]
end

 
@#$#@#$#@
GRAPHICS-WINDOW
207
10
750
574
20
20
13.0
1
10
1
1
1
0
1
1
1
-20
20
-20
20
0
0
1
ticks
30.0

BUTTON
13
10
76
43
setup
setup
NIL
1
T
OBSERVER
NIL
NIL
NIL
NIL
1

SLIDER
13
109
185
142
taille_ville
taille_ville
0
6
4
1
1
NIL
HORIZONTAL

BUTTON
108
10
171
43
go
go
T
1
T
OBSERVER
NIL
NIL
NIL
NIL
1

SLIDER
10
156
192
189
treatment-level
treatment-level
1
3
1
1
1
NIL
HORIZONTAL

MONITOR
767
435
1009
496
infected-population-percentage
((count patches with [ pcolor = yellow ]) / (count patches with [ pcolor = yellow or pcolor = black or pcolor = white ])) * 100
0
1
15

PLOT
767
16
1352
422
infected-population
ticks
pop %
0.0
10.0
0.0
100.0
true
true
"" ""
PENS
"infected-pop" 1.0 0 -16777216 true "" "plot ((count patches with [ pcolor = yellow ]) / (count patches with [ pcolor = yellow or pcolor = black or pcolor = white])) * 100"
" viruses" 1.0 0 -2674135 true "" "plot count viruses / 100"

MONITOR
767
504
1009
549
virus
count turtles
0
1
11

BUTTON
61
71
124
104
NIL
go
NIL
1
T
OBSERVER
NIL
NIL
NIL
NIL
1

INPUTBOX
11
321
166
381
alpha
0.1
1
0
Number

INPUTBOX
10
393
165
453
beta
0.01
1
0
Number

SLIDER
10
201
182
234
immunity
immunity
1
3
1
1
1
NIL
HORIZONTAL

@#$#@#$#@
## WHAT IS IT?

(a general understanding of what the model is trying to show or explain)

## HOW IT WORKS

(what rules the agents use to create the overall behavior of the model)

## HOW TO USE IT

(how to use the model, including a description of each of the items in the Interface tab)

## THINGS TO NOTICE

(suggested things for the user to notice while running the model)

## THINGS TO TRY

(suggested things for the user to try to do (move sliders, switches, etc.) with the model)

## EXTENDING THE MODEL

(suggested things to add or change in the Code tab to make the model more complicated, detailed, accurate, etc.)

## NETLOGO FEATURES

(interesting or unusual features of NetLogo that the model uses, particularly in the Code tab; or where workarounds were needed for missing features)

## RELATED MODELS

(models in the NetLogo Models Library and elsewhere which are of related interest)

## CREDITS AND REFERENCES

(a reference to the model's URL on the web if it has one, as well as any other necessary credits, citations, and links)
@#$#@#$#@
default
true
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airplane
true
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arrow
true
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box
false
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Line -16777216 false 150 285 150 135
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Line -16777216 false 150 135 285 75

bug
true
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Circle -7500403 true true 110 127 80
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butterfly
true
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car
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circle
false
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circle 2
false
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cow
false
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cylinder
false
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dot
false
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face happy
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face neutral
false
0
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Circle -16777216 true false 60 75 60
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Rectangle -16777216 true false 60 195 240 225

face sad
false
0
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Circle -16777216 true false 60 75 60
Circle -16777216 true false 180 75 60
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fish
false
0
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Circle -16777216 true false 215 106 30

flag
false
0
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Polygon -7500403 true true 90 150 270 90 90 30
Line -7500403 true 75 135 90 135
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flower
false
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Circle -7500403 true true 192 85 38
Circle -7500403 true true 85 40 38
Circle -7500403 true true 177 40 38
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Circle -7500403 true true 70 85 38
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Circle -7500403 true true 96 51 108
Circle -16777216 true false 113 68 74
Polygon -10899396 true false 189 233 219 188 249 173 279 188 234 218
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house
false
0
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Polygon -7500403 true true 15 120 150 15 285 120
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leaf
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line
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line half
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pentagon
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person
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Rectangle -7500403 true true 127 79 172 94
Polygon -7500403 true true 195 90 240 150 225 180 165 105
Polygon -7500403 true true 105 90 60 150 75 180 135 105

plant
false
0
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Polygon -7500403 true true 135 255 90 210 45 195 75 255 135 285
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Polygon -7500403 true true 135 105 90 60 45 45 75 105 135 135
Polygon -7500403 true true 165 105 165 135 225 105 255 45 210 60
Polygon -7500403 true true 135 90 120 45 150 15 180 45 165 90

sheep
false
15
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Circle -1 true true 70 65 162
Circle -1 true true 150 105 120
Polygon -7500403 true false 218 120 240 165 255 165 278 120
Circle -7500403 true false 214 72 67
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Rectangle -1 true true 65 221 80 296
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square
false
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square 2
false
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star
false
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target
false
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Circle -7500403 true true 60 60 180
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Circle -7500403 true true 120 120 60

tree
false
0
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Rectangle -6459832 true false 120 195 180 300
Circle -7500403 true true 65 21 108
Circle -7500403 true true 116 41 127
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triangle
false
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triangle 2
false
0
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truck
false
0
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Polygon -7500403 true true 296 193 296 150 259 134 244 104 208 104 207 194
Rectangle -1 true false 195 60 195 105
Polygon -16777216 true false 238 112 252 141 219 141 218 112
Circle -16777216 true false 234 174 42
Rectangle -7500403 true true 181 185 214 194
Circle -16777216 true false 144 174 42
Circle -16777216 true false 24 174 42
Circle -7500403 false true 24 174 42
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turtle
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0
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wheel
false
0
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Circle -16777216 true false 30 30 240
Line -7500403 true 150 285 150 15
Line -7500403 true 15 150 285 150
Circle -7500403 true true 120 120 60
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Line -7500403 true 40 84 269 221
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wolf
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0
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x
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@#$#@#$#@
NetLogo 5.0.5
@#$#@#$#@
@#$#@#$#@
@#$#@#$#@
<experiments>
  <experiment name="experiment" repetitions="1" runMetricsEveryStep="true">
    <setup>setup</setup>
    <go>go</go>
    <exitCondition>count patches with [pcolor = black] = 0</exitCondition>
    <metric>ticks</metric>
    <enumeratedValueSet variable="taille_grille">
      <value value="1"/>
      <value value="1"/>
      <value value="7"/>
    </enumeratedValueSet>
    <enumeratedValueSet variable="temperature">
      <value value="1"/>
      <value value="1"/>
      <value value="20"/>
    </enumeratedValueSet>
    <enumeratedValueSet variable="treatment-level">
      <value value="1"/>
    </enumeratedValueSet>
  </experiment>
</experiments>
@#$#@#$#@
@#$#@#$#@
default
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-0.2 0 0.0 1.0
0.0 1 1.0 0.0
0.2 0 0.0 1.0
link direction
true
0
Line -7500403 true 150 150 90 180
Line -7500403 true 150 150 210 180

@#$#@#$#@
0
@#$#@#$#@