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Future work: Single Cell Extraction #7

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ElisabethKugler opened this issue Jan 11, 2022 · 0 comments
Open

Future work: Single Cell Extraction #7

ElisabethKugler opened this issue Jan 11, 2022 · 0 comments

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@ElisabethKugler
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Future work: to extract individual cells out of a full segmented stack.
At the moment we address single-cell analysis as follows: (a) experimentally - bel individual clones and create images from individual cells or (b) analyze whole params (e.g. whole stack volume) and divide by the number of cell bodies.
EK tried various approaches (e.g. longest path, directionality, etc), but it's likely to require some machine learning.

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