From 9b2a8a5d37bdb968c093f26915bbbbc765b0646b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E2=80=98ens-ftricomi=E2=80=99?= Date: Thu, 28 Sep 2023 11:40:55 +0100 Subject: [PATCH] fix on single modules rst and on the index| --- docs/source/conf.py | 2 +- docs/source/dust.rst | 2 +- docs/source/index.rst | 26 +++++++++++++------------- docs/source/repeatmasker.rst | 2 +- docs/source/stringtie.rst | 2 +- docs/source/trnascan.rst | 2 +- 6 files changed, 18 insertions(+), 18 deletions(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index c19ec7e..cec6bc8 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -108,7 +108,7 @@ # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ['_static', '_modules'] +html_static_path = ['_static'] # One entry per manual page. List of tuples diff --git a/docs/source/dust.rst b/docs/source/dust.rst index 2bc64ca..f1a98b4 100644 --- a/docs/source/dust.rst +++ b/docs/source/dust.rst @@ -1,5 +1,5 @@ DustMasker Module Documentation -============================== +=================================== .. automodule:: ensembl.tools.anno.repeat_annotation.dust :members: diff --git a/docs/source/index.rst b/docs/source/index.rst index 98a7404..6e24e41 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -31,24 +31,24 @@ Check out :ref:`installation ` section for further information on how to install the project. .. toctree:: - :maxdepth: 2 + :maxdepth: 1 :caption: Index install license - _modules/cpg - _modules/dust - _modules/eponine - _modules/genblast - _modules/minimap - _modules/red - _modules/repeatmasker - _modules/scallop - _modules/star - _modules/stringtie - _modules/trf - _modules/trnascan + cpg + dust + eponine + genblast + minimap + red + repeatmasker + scallop + star + stringtie + trf + trnascan Indices and tables ================== diff --git a/docs/source/repeatmasker.rst b/docs/source/repeatmasker.rst index 8598c0e..dd07f72 100644 --- a/docs/source/repeatmasker.rst +++ b/docs/source/repeatmasker.rst @@ -1,5 +1,5 @@ Repeatmasker Module Documentation -============================== +==================================== .. automodule:: ensembl.tools.anno.repeat_annotation.repeatmasker :members: diff --git a/docs/source/stringtie.rst b/docs/source/stringtie.rst index 878de41..980dcbd 100644 --- a/docs/source/stringtie.rst +++ b/docs/source/stringtie.rst @@ -1,5 +1,5 @@ Stringtie Module Documentation -============================== +================================== .. automodule:: ensembl.tools.anno.transcriptomic_annotation.stringtie :members: diff --git a/docs/source/trnascan.rst b/docs/source/trnascan.rst index d9da9d4..6193545 100644 --- a/docs/source/trnascan.rst +++ b/docs/source/trnascan.rst @@ -1,5 +1,5 @@ tRNAscan-SE Module Documentation -============================== +=================================== .. automodule:: ensembl.tools.anno.snc_rna_annotation.trnascan :members: