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Many NAs in the gene-wise Fst file #19

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473021677 opened this issue Dec 18, 2024 · 2 comments
Open

Many NAs in the gene-wise Fst file #19

473021677 opened this issue Dec 18, 2024 · 2 comments

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@473021677
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Hi,
I am yuanyang, a post doctorate. I have run the pogenom.pl and the resulting files have been generated. However, there are many NA in the gene-wise Fst file. I am not sure what is wrong with it. I really need your help. I have appended the gene-wise Fst file. If you could help, I really appreciate it. Thanks.

Best regards,
Yang Yuan
Uploading j46-pa_bin.15.fst-per-gene.txt…
@lfdelzam
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lfdelzam commented Jan 4, 2025

Have you used input Pogenom?

@473021677
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Yes, I have used the Input_POGENOM pipeline. I am not sure whether so many NAs in the gene-wise Fst file might be due to the insufficient coverage of these genes in either or both of the two samples compared.

Best regards,
Yang Yuan

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@473021677 @lfdelzam