node.js.yml

name: Yarn CI
on: [pull_request]
jobs:
  build:
    runs-on: ubuntu-latest

    steps:
    - name: Checkout repository
      uses: actions/checkout@v3
    - name: Set up Node.js
      uses: actions/setup-node@v3
      with:
        node-version: '16.14.0'
    - name: Check versions
      run: |
          main_version=$(grep -E '^# 3DBIONOTES-WS v[0-9.]+' README.md | sed -E 's/^# 3DBIONOTES-WS v([0-9.]+)$/\1/')
          viewer_protvista_version=$(cat app/views/webserver/viewer.html.haml | grep -Eo 'protvista-pdb-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}')
          viewer_pdbe_molstar_version=$(cat app/views/webserver/viewer.html.haml | grep -Eo 'pdbe-molstar-plugin-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}')
          cd app/assets/javascripts/covid19
          bio_covid19_version=$(cat package.json | jq -r '.version')
          cd ../3dbio_viewer
          bio_viewer_version=$(cat package.json | jq -r '.version')
          protvista_version=$(cat package.json | jq -r '.dependencies["@3dbionotes/protvista-pdb"]')
          pdbe_molstar_version=$(cat package.json | jq -r '.dependencies["@3dbionotes/pdbe-molstar"]')
          index_protvista_version=$(cat public/index.html | grep -Eo 'protvista-pdb-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}')
          index_pdbe_molstar_version=$(cat public/index.html | grep -Eo 'pdbe-molstar-plugin-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}')
          if [ "$bio_viewer_version" != "$bio_covid19_version" ] ||
            [ "$main_version" != "$bio_covid19_version" ]; then
            echo "3dbio_viewer version doesn't match with covid19 version"
            echo "3dbio_viewer: $bio_viewer_version"
            echo "covid19: $bio_covid19_version"
            echo "README.md version: $main_version"
            exit 1
          fi

          if [ "$viewer_protvista_version" != "$index_protvista_version" ] ||
            [ "$viewer_pdbe_molstar_version" != "$index_pdbe_molstar_version" ] ||
            [ "$(echo "$index_protvista_version" | sed 's/protvista-pdb-//')" != "$protvista_version" ] ||
            [ "$(echo "$index_pdbe_molstar_version" | sed 's/pdbe-molstar-plugin-//')" != "$pdbe_molstar_version" ]; then
            echo "Versions don't match:"
            echo "Viewer and index protvista: $viewer_protvista_version, $index_protvista_version"
            echo "Viewer and index pdbe-molstar: $viewer_pdbe_molstar_version, $index_pdbe_molstar_version"
            echo "3dbio_viewer dependency and index protvista: $protvista_version, $(echo "$index_protvista_version" | sed 's/protvista-pdb-//')"
            echo "3dbio_viewer dependency and index pdbe-molstar: $pdbe_molstar_version, $(echo "$index_pdbe_molstar_version" | sed 's/pdbe-molstar-plugin-//'), "
            exit 1
          fi

          echo "3dbio_viewer versions match"
          echo "README.md version: $main_version"
          echo "3DBIONOTES version: $bio_viewer_version"
          echo "protvista-pdb version: $protvista_version"
          echo "pdbe-molstar version: $pdbe_molstar_version"
    - name: Install and build (3dbio_viewer)
      run: |
          cd app/assets/javascripts/3dbio_viewer
          yarn install
          yarn build
    - name: Check build dependency versions (3dbioviewer)
      run: |
          cd app/assets/javascripts/3dbio_viewer
          index_protvista_version=$(cat public/index.html | grep -Eo 'protvista-pdb-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}')
          index_pdbe_molstar_version=$(cat public/index.html | grep -Eo 'pdbe-molstar-plugin-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}')
          build_pdbe_molstar_file="build/pdbe-molstar/$index_pdbe_molstar_version.js"
          if [ -f "$build_pdbe_molstar_file" ]; then
            echo "Build file $build_pdbe_molstar_file exists."
          else
            echo "Build file $build_pdbe_molstar_file does not exist."
            exit 1
          fi

          build_protvista_file="build/protvista-pdb/$index_protvista_version.js"
          if [ -f "$build_protvista_file" ]; then
            echo "Build file $build_protvista_file exists."
          else
            echo "Build file $build_protvista_file does not exist."
            exit 1
          fi
    - name: Run tests (3dbio_viewer)
      run: |
          cd app/assets/javascripts/3dbio_viewer
          yarn test:nowatch
    - name: Install and build (covid19)
      run: |
          cd app/assets/javascripts/covid19
          yarn install
          yarn localize
          yarn build