DESCRIPTION

Package: conumee
Title: Enhanced copy-number variation analysis using Illumina DNA methylation
    arrays
Version: 1.6.0
Author: Volker Hovestadt, Marc Zapatka
Maintainer: Volker Hovestadt <conumee@hovestadt.bio>
Address: Division of Molecular Genetics, German Cancer Research Center (DKFZ),
    Heidelberg, Germany
Description: This package contains a set of processing and plotting methods
    for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC
    methylation arrays.
Imports:
    methods,
    stats,
    DNAcopy,
    rtracklayer,
    GenomicRanges,
    IRanges,
    GenomeInfoDb,
    gtools
Depends:
    R (>= 3.0),
    minfi,
    IlluminaHumanMethylation450kmanifest,
    IlluminaHumanMethylation450kanno.ilmn12.hg19,
    IlluminaHumanMethylationEPICmanifest,
    IlluminaHumanMethylationEPICanno.ilm10b2.hg19
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    minfiData,
    CopyNumber450kData,
    RCurl
License: GPL (>= 2)
LazyData: false
Collate:
    classes.R
    annotation.R
    load.R
    process.R
    output.R
    data.R
biocViews: CopyNumberVariation, DNAMethylation, MethylationArray, Microarray,
    Normalization, Preprocessing, QualityControl, Software
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.2.0