requirements.txt

# Copyright (C) 2018-2023  C-PAC Developers
# This file is part of C-PAC.
# C-PAC is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
# C-PAC is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
# You should have received a copy of the GNU Lesser General Public License along with C-PAC. If not, see <https://www.gnu.org/licenses/>.
boto3==1.28.4
ciftify @ git+https://git@github.com/fcp-indi/ciftify
click==8.1.5
click-aliases==1.0.1
configparser==5.3.0
flowdump==0.1.2
future==0.18.3
INDI-Tools @ git+https://git@github.com/FCP-INDI/INDI-Tools.git@998c246c597209f06f8d5c5b92ddc2c9c1942f46
joblib==1.2.0
lockfile==0.12.2
matplotlib==3.7.1
networkx==3.1
nibabel==5.1.0
nilearn==0.10.0
nipype==1.8.6
nose==1.3.7
numpy==1.25.1
pandas==2.0.3
pathvalidate==2.5.2
patsy==0.5.3
prov==2.0.0
psutil==5.9.5
PyBASC==0.6.1
pybids==0.15.6
PyPEER @ git+https://git@github.com/ChildMindInstitute/PyPEER.git@6965d2b2bea0fef824e885fec33a8e0e6bd50a97
python-dateutil==2.8.2
PyYAML==6.0
requests==2.31.0
scikit-learn==1.2.2
scipy==1.11.1
sdcflows==2.4.0
semver==3.0.1
traits==6.3.2
voluptuous==0.13.1
# the below are pinned specifically to match what the FSL installer installs
botocore==1.31.4
charset-normalizer==3.1.0
cryptography==42.0.3
h5py==3.8.0
importlib-metadata==6.8.0
lxml==4.9.2
pip==23.3
setuptools==68.0.0
urllib3==1.26.18
wheel==0.40.0
zipp==3.16.0