Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

HLA class II prediction #107

Open
PKazakova opened this issue May 7, 2020 · 5 comments
Open

HLA class II prediction #107

PKazakova opened this issue May 7, 2020 · 5 comments

Comments

@PKazakova
Copy link

Hi,
OptiType has been reported as one of the best performing tool for genotyping HLA Class I alleles, but unfortunately, OptiType does not type HLA Class II alleles, which may limit its clinical utility.
I wonder if it's just a matter of changing some parameters in OptiTypePipeline.py or is something different.
Do you plan a new release with HLA II Class prediction?

@serge2016
Copy link

serge2016 commented Jun 15, 2020

Hello! I am very interested in it too. Any news?
#51

@ibwoo
Copy link

ibwoo commented Jun 15, 2020

Very excited for this! @andras86 has recently responded in #51 that it will finally arrive soon, but I would love to hear a more detailed response with an estimated timeframe. I'm happy to use it as a pre-release if necessary but a timeframe would help me decide whether I can wait for Optitype or will need to use alternative programs.

@yubau1112
Copy link

I am very interested in it too. I wait for class II prediction. :)

yubau

@EugeneEA
Copy link

would be great

@serge2016
Copy link

Hello! Any news?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

5 participants