diff --git a/automated-issue-ref.ipynb b/automated-issue-ref.ipynb index dd35c9c2..b88f6032 100755 --- a/automated-issue-ref.ipynb +++ b/automated-issue-ref.ipynb @@ -2,7 +2,7 @@ "cells": [ { "cell_type": "code", - "execution_count": 11, + "execution_count": 1, "id": "f64573a2", "metadata": { "scrolled": true @@ -153,7 +153,17 @@ "processed 1390 milestones\n", "processed 1400 milestones\n", "processed 1410 milestones\n", - "processed 1420 milestones\n" + "processed 1420 milestones\n", + "processed 1430 milestones\n", + "processed 1440 milestones\n", + "processed 1450 milestones\n", + "processed 1460 milestones\n", + "processed 1470 milestones\n", + "processed 1480 milestones\n", + "processed 1490 milestones\n", + "processed 1500 milestones\n", + "processed 1510 milestones\n", + "processed 1520 milestones\n" ] } ], @@ -250,7 +260,7 @@ }, { "cell_type": "code", - "execution_count": 12, + "execution_count": null, "id": "88a367db", "metadata": {}, "outputs": [], @@ -287,7 +297,7 @@ }, { "cell_type": "code", - "execution_count": 13, + "execution_count": 3, "id": "f5b15585", "metadata": {}, "outputs": [], @@ -310,7 +320,7 @@ }, { "cell_type": "code", - "execution_count": 14, + "execution_count": 5, "id": "a56544a8", "metadata": {}, "outputs": [ @@ -318,38 +328,92 @@ "name": "stdout", "output_type": "stream", "text": [ - "['KR.1', 'sars-cov-2-variants/lineage-proposals#1253']\n", - "['KV.2', 'sars-cov-2-variants/lineage-proposals#1097']\n", - "['JN.1.4.6', 'sars-cov-2-variants/lineage-proposals#1097']\n", - "['JN.1.7.1', 'sars-cov-2-variants/lineage-proposals#1371']\n", - "['JN.1.7.3', 'sars-cov-2-variants/lineage-proposals#1343']\n", - "['JN.1.8.2', 'sars-cov-2-variants/lineage-proposals#1089']\n", - "['KP.2.1', 'sars-cov-2-variants/lineage-proposals#1440']\n", - "['KP.2.2', 'sars-cov-2-variants/lineage-proposals#1446']\n", - "['KP.3', 'sars-cov-2-variants/lineage-proposals#1410']\n", - "['JN.1.18.1', 'sars-cov-2-variants/lineage-proposals#1414']\n", - "['JN.1.18.2', 'sars-cov-2-variants/lineage-proposals#1441']\n", - "['JN.1.26', 'sars-cov-2-variants/lineage-proposals#1089']\n", - "['JN.1.28.1', 'sars-cov-2-variants/lineage-proposals#1244']\n", - "['KW.1', 'sars-cov-2-variants/lineage-proposals#1244']\n", - "['KW.1.1', 'sars-cov-2-variants/lineage-proposals#1244']\n", - "['JN.1.30.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", - "['KU.2', 'sars-cov-2-variants/lineage-proposals#1089']\n", - "['JN.1.31', 'sars-cov-2-variants/lineage-proposals#1319']\n", - "['JN.1.35', 'sars-cov-2-variants/lineage-proposals#1362']\n", - "['JN.1.36', 'sars-cov-2-variants/lineage-proposals#1326']\n", - "['JN.1.36.1', 'sars-cov-2-variants/lineage-proposals#1326']\n", - "['JN.1.40', 'sars-cov-2-variants/lineage-proposals#1451']\n", - "['JN.1.41', 'sars-cov-2-variants/lineage-proposals#1256']\n", - "['JN.1.42.1', 'sars-cov-2-variants/lineage-proposals#1474']\n", - "['JN.1.44', 'sars-cov-2-variants/lineage-proposals#987']\n", - "['JN.13.1', 'sars-cov-2-variants/lineage-proposals#1386']\n", - "['JQ.2.1', 'sars-cov-2-variants/lineage-proposals#1373']\n", + "['JN.1.1.3', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['KR.1.1', 'sars-cov-2-variants/lineage-proposals#1545']\n", + "['KR.3', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['JN.1.1.8', 'sars-cov-2-variants/lineage-proposals#1521']\n", + "['JN.1.1.9', 'sars-cov-2-variants/lineage-proposals#1525']\n", + "['LL.1', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['LE.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['LE.1.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['LE.1.3.1', 'sars-cov-2-variants/lineage-proposals#1612']\n", + "['JN.1.7.4', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['JN.1.7.5', 'sars-cov-2-variants/lineage-proposals#1374']\n", + "['LK.1', 'sars-cov-2-variants/lineage-proposals#1374']\n", + "['LB.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['LB.1.2.1', 'sars-cov-2-variants/lineage-proposals#1559']\n", + "['LB.1.3.1', 'sars-cov-2-variants/lineage-proposals#1620']\n", + "['KP.1.1.2', 'sars-cov-2-variants/lineage-proposals#1541']\n", + "['KP.1.1.3', 'sars-cov-2-variants/lineage-proposals#1502']\n", + "['LP.1.1', 'sars-cov-2-variants/lineage-proposals#1633']\n", + "['KP.1.2', 'sars-cov-2-variants/lineage-proposals#1097']\n", + "['KP.2.3', 'sars-cov-2-variants/lineage-proposals#1459']\n", + "['KP.2.3.1', 'sars-cov-2-variants/lineage-proposals#1548']\n", + "['KP.2.3.4', 'sars-cov-2-variants/lineage-proposals#1596']\n", + "['KP.2.4', 'sars-cov-2-variants/lineage-proposals#1524']\n", + "['KP.2.5', 'sars-cov-2-variants/lineage-proposals#1527']\n", + "['KP.2.8', 'sars-cov-2-variants/lineage-proposals#1546']\n", + "['KP.2.9', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['KP.2.10', 'sars-cov-2-variants/lineage-proposals#1553']\n", + "['KP.2.11', 'sars-cov-2-variants/lineage-proposals#1520']\n", + "['KP.2.12', 'sars-cov-2-variants/lineage-proposals#1550']\n", + "['KP.2.14', 'sars-cov-2-variants/lineage-proposals#1578']\n", + "['KP.3.1.1', 'sars-cov-2-variants/lineage-proposals#1563']\n", + "['MC.1', 'sars-cov-2-variants/lineage-proposals#1638']\n", + "['KP.3.1.5', 'sars-cov-2-variants/lineage-proposals#1614']\n", + "['KP.3.2.1', 'sars-cov-2-variants/lineage-proposals#1556']\n", + "['KP.3.2.5', 'sars-cov-2-variants/lineage-proposals#1604']\n", + "['KP.3.3', 'sars-cov-2-variants/lineage-proposals#1531']\n", + "['KP.3.3.1', 'sars-cov-2-variants/lineage-proposals#1651']\n", + "['KP.4.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['KP.4.1.2', 'sars-cov-2-variants/lineage-proposals#1611']\n", + "['KP.4.2', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['KP.5', 'sars-cov-2-variants/lineage-proposals#1097']\n", + "['KS.1.1', 'sars-cov-2-variants/lineage-proposals#1565']\n", + "['JN.1.15.1', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['LU.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['LU.2', 'sars-cov-2-variants/lineage-proposals#1652']\n", + "['LF.1.1', 'sars-cov-2-variants/lineage-proposals#1448']\n", + "['LF.2', 'sars-cov-2-variants/lineage-proposals#1502']\n", + "['LF.3.1.1', 'sars-cov-2-variants/lineage-proposals#1558']\n", + "['LF.4.1', 'sars-cov-2-variants/lineage-proposals#1590']\n", + "['JN.1.16.2', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['LA.1', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['LA.2', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['JN.1.18.3', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['MA.1', 'sars-cov-2-variants/lineage-proposals#1635']\n", + "['JN.1.18.5', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['JN.1.23.1', 'sars-cov-2-variants/lineage-proposals#1552']\n", + "['JN.1.24.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['LM.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['KW.1.1.1', 'sars-cov-2-variants/lineage-proposals#1504']\n", + "['LG.1', 'sars-cov-2-variants/lineage-proposals#1504']\n", + "['JN.1.29.1', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['JN.1.32.1', 'sars-cov-2-variants/lineage-proposals#1442']\n", + "['JN.1.39.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['JN.1.47.1', 'sars-cov-2-variants/lineage-proposals#1318']\n", + "['JN.1.47.2', 'sars-cov-2-variants/lineage-proposals#1097']\n", + "['JN.1.48.2', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['MB.1.1', 'sars-cov-2-variants/lineage-proposals#1659']\n", + "['JN.1.55.1', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['JN.1.55.2', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['JN.1.62', 'sars-cov-2-variants/lineage-proposals#1253']\n", + "['JN.11.1', 'sars-cov-2-variants/lineage-proposals#1303']\n", + "['JQ.2.1.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", "['JH.2', '#2068']\n", - "['GE.1.2.2', 'sars-cov-2-variants/lineage-proposals#1340']\n", - "['XDD.1.1.1', 'sars-cov-2-variants/lineage-proposals#1450']\n", - "['XDK.1', 'sars-cov-2-variants/lineage-proposals#1407']\n", - "['XDP.1', 'sars-cov-2-variants/lineage-proposals#1358']\n" + "['XDK.1.1', 'sars-cov-2-variants/lineage-proposals#1490']\n", + "['XDK.1.2', 'sars-cov-2-variants/lineage-proposals#1407']\n", + "['XDK.2', 'sars-cov-2-variants/lineage-proposals#1385']\n", + "['XDK.3', 'sars-cov-2-variants/lineage-proposals#1511']\n", + "['XDK.4.1', 'sars-cov-2-variants/lineage-proposals#1467']\n", + "['XDK.6', 'sars-cov-2-variants/lineage-proposals#1572']\n", + "['XDP.2', 'sars-cov-2-variants/lineage-proposals#1432']\n", + "['XDQ.1.1', 'sars-cov-2-variants/lineage-proposals#1523']\n", + "['XDQ.2', 'sars-cov-2-variants/lineage-proposals#1408']\n", + "['XDQ.3', 'sars-cov-2-variants/lineage-proposals#1508']\n", + "['XDR.1', 'sars-cov-2-variants/lineage-proposals#1542']\n", + "['XDZ', 'sars-cov-2-variants/lineage-proposals#1356']\n", + "['XEB', 'sars-cov-2-variants/lineage-proposals#1290']\n" ] } ], @@ -406,7 +470,7 @@ }, { "cell_type": "code", - "execution_count": 15, + "execution_count": 6, "id": "1c9369e1", "metadata": {}, "outputs": [ @@ -416,7 +480,7 @@ "text": [ "Add 1 references from cov-lineages/pango-designation.\n", "Upgrade 0 references from cov-lineages/pango-designation.\n", - "Add 31 references from sars-cov-2-variants/lineage-proposals.\n" + "Add 85 references from sars-cov-2-variants/lineage-proposals.\n" ] } ], diff --git a/autoref/milestone.txt b/autoref/milestone.txt index 9e24035a..84e6588a 100755 --- a/autoref/milestone.txt +++ b/autoref/milestone.txt @@ -1335,13 +1335,16 @@ sars#385 XDD.1 XDD.1+XDD.1.1 sars#385 XDD.1.1 XDD.1+XDD.1.1 sars#386 XDD.2 XDD.2 sars#387 JN.1.9 JN.1.9 -sars#389 JN.1.1.1 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2 -sars#389 JN.1.8.1 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2 -sars#389 JN.1.7 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2 -sars#389 JN.1.9.1 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2 -sars#389 JN.1.4.3 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2 -sars#389 JN.1.4.6 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2 -sars#389 KV.2 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2 +sars#389 JN.1.1.1 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2+KP.1.2+JN.1.47.2+KP.5 +sars#389 JN.1.8.1 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2+KP.1.2+JN.1.47.2+KP.5 +sars#389 JN.1.7 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2+KP.1.2+JN.1.47.2+KP.5 +sars#389 JN.1.9.1 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2+KP.1.2+JN.1.47.2+KP.5 +sars#389 JN.1.4.3 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2+KP.1.2+JN.1.47.2+KP.5 +sars#389 JN.1.4.6 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2+KP.1.2+JN.1.47.2+KP.5 +sars#389 KV.2 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2+KP.1.2+JN.1.47.2+KP.5 +sars#389 KP.1.2 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2+KP.1.2+JN.1.47.2+KP.5 +sars#389 JN.1.47.2 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2+KP.1.2+JN.1.47.2+KP.5 +sars#389 KP.5 JN.1.1.1+JN.1.8.1+JN.1.7+JN.1.9.1+JN.1.4.3,+JN.1.4.6+KV.2+KP.1.2+JN.1.47.2+KP.5 sars#391 JN.2.3 JN.2.3 sars#392 HN.8 HN.8 sars#393 XDM XDM @@ -1356,7 +1359,8 @@ sars#401 XDN XDN sars#402 XDP XDP sars#403 JN.3.2 JN.3.2+JN.3.2.1 sars#403 JN.3.2.1 JN.3.2+JN.3.2.1 -sars#404 JN.11 JN.11 +sars#404 JN.11 JN.11+JN.11.1 +sars#404 JN.11.1 JN.11+JN.11.1 sars#405 JN.12 JN.12 sars#408 JN.1.4.1 JN.1.4.1 sars#409 JN.1.2.1 JN.1.2.1 @@ -1371,36 +1375,68 @@ sars#418 HK.13.2.1 HK.13.2.1 sars#419 KP.1 KP.1 sars#420 JN.1.7.1 JN.1.7.1 sars#422 XDQ.1 XDQ.1 -sars#423 XDK.1 XDK.1 -sars#424 JN.1.12 JN.1.12+JN.1.11.1+JN.1.16+KR.1+JN.1.1.6+KS.1 -sars#424 JN.1.11.1 JN.1.12+JN.1.11.1+JN.1.16+KR.1+JN.1.1.6+KS.1 -sars#424 JN.1.16 JN.1.12+JN.1.11.1+JN.1.16+KR.1+JN.1.1.6+KS.1 -sars#424 KR.1 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JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 KP.4.2 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 KP.4.1 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 LA.2 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 LB.1 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 JN.1.24.1 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 KP.2.9 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 LE.1 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 LE.1.1 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 JN.1.48.2 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 JN.1.39.1 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 JQ.2.1.1 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 LM.1 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 JN.1.18.5 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 +sars#425 LU.1 JN.1.1.3+JN.1.6.1+JN.1.18+JN.1.1.5+KP.1.1+KP.2+JN.1.26,+JN.1.4.4,+JN.1.8.2,+JN.1.16.1+JN.1.30.1+KU.2+KP.4.2+KP.4.1+LA.2+LB.1+JN.1.24.1+KP.2.9+LE.1+LE.1.1+JN.1.48.2+JN.1.39.1+JQ.2.1.1,+LM.1+JN.1.18.5+LU.1 sars#426 JQ.2 JQ.2+JQ.2.1 sars#426 JQ.2.1 JQ.2+JQ.2.1 sars#427 JN.13.1 JN.13.1 sars#428 JN.1.1.7 JN.1.1.7 sars#429 JN.1.27 JN.1.27 sars#430 JN.1.4.5 JN.1.4.5 -sars#431 JN.1.18.1 JN.1.18.1 +sars#431 JN.1.18.1 JN.1.18.1+LQ.2 +sars#431 LQ.2 JN.1.18.1+LQ.2 sars#432 JN.1.31 JN.1.31 sars#433 GE.1.2.2 GE.1.2.2 sars#434 KP.3 KP.3 -sars#435 JN.1.33 JN.1.33 +sars#435 JN.1.39.3 JN.1.39.3 sars#437 JN.1.35 JN.1.35 sars#438 KP.2.2 KP.2.2 sars#439 KP.2.1 KP.2.1 @@ -1418,3 +1454,69 @@ sars#449 XDP.1 XDP.1 sars#450 JN.14 JN.14 sars#451 JN.1.42.1 JN.1.42.1 sars#452 JN.1.7.3 JN.1.7.3 +sars#455 KP.2.3 KP.2.3 +sars#456 JN.1.32.1 JN.1.32.1 +sars#457 JN.1.47.1 JN.1.47.1 +sars#458 XDW XDW +sars#459 XDQ.2 XDQ.2 +sars#460 XDQ.3 XDQ.3 +sars#461 XDR.1 XDR.1 +sars#462 XDK.3 XDK.3 +sars#463 XDK.1.1 XDK.1.1 +sars#464 XDK.2 XDK.2 +sars#465 XDQ.1.1 XDQ.1.1 +sars#466 KP.2.4 KP.2.4 +sars#467 KP.2.5 KP.2.5 +sars#468 KP.2.8 KP.2.8 +sars#469 KP.2.10 KP.2.10 +sars#470 KP.2.11 KP.2.11 +sars#471 KP.2.3.1 KP.2.3.1 +sars#472 KP.2.12 KP.2.12 +sars#473 KP.1.1.2 KP.1.1.2 +sars#474 LF.1.1 LF.1.1+LF.1.1.1 +sars#474 LF.1.1.1 LF.1.1+LF.1.1.1 +sars#475 KP.3.3 KP.3.3 +sars#476 KW.1.1.1 KW.1.1.1+LG.1 +sars#476 LG.1 KW.1.1.1+LG.1 +sars#477 JN.1.1.8 JN.1.1.8 +sars#478 XDK.4.1 XDK.4.1 +sars#479 XDK.6 XDK.6 +sars#480 KP.3.1.1 KP.3.1.1 +sars#481 KP.2.14 KP.2.14 +sars#482 KS.1.1 KS.1.1 +sars#483 JN.1.7.5 JN.1.7.5+LK.1 +sars#483 LK.1 JN.1.7.5+LK.1 +sars#485 LF.2 LF.2+KP.1.1.3 +sars#485 KP.1.1.3 LF.2+KP.1.1.3 +sars#486 JN.1.23.1 JN.1.23.1 +sars#487 KP.3.2.1 KP.3.2.1 +sars#488 KR.1.1 KR.1.1 +sars#489 LB.1.5 LB.1.5 +sars#490 LF.3.1 LF.3.1+LF.3.1.1 +sars#490 LF.3.1.1 LF.3.1+LF.3.1.1 +sars#491 KP.3.1.2 KP.3.1.2 +sars#492 KP.3.1.4 KP.3.1.4 +sars#493 KP.3.1.3 KP.3.1.3 +sars#494 KP.1.1.4 KP.1.1.4 +sars#495 LP.1 LP.1 +sars#496 JN.1.4.8 JN.1.4.8 +sars#497 JN.1.57.1 JN.1.57.1 +sars#498 LB.1.2.1 LB.1.2.1+XDY +sars#498 XDY LB.1.2.1+XDY +sars#499 KP.3.2.5 KP.3.2.5 +sars#500 JN.1.1.9 JN.1.1.9 +sars#501 XEB XEB +sars#502 XDP.2 XDP.2 +sars#503 LE.1.3.1 LE.1.3.1 +sars#504 XDZ XDZ +sars#505 KP.4.1.2 KP.4.1.2 +sars#506 KP.3.1.5 KP.3.1.5 +sars#507 MC.1 MC.1 +sars#508 KP.3.3.1 KP.3.3.1 +sars#509 LB.1.3.1 LB.1.3.1 +sars#510 KP.2.3.4 KP.2.3.4 +sars#511 MA.1 MA.1 +sars#512 MB.1.1 MB.1.1 +sars#513 LP.1.1 LP.1.1 +sars#514 LF.4.1 LF.4.1 +sars#515 LU.2 LU.2 diff --git a/autoref/missing_refs.txt b/autoref/missing_refs.txt index 2e080d9c..36cbcfa3 100755 --- a/autoref/missing_refs.txt +++ b/autoref/missing_refs.txt @@ -1,32 +1,86 @@ -KR.1 sars-cov-2-variants/lineage-proposals#1253 -KV.2 sars-cov-2-variants/lineage-proposals#1097 -JN.1.4.6 sars-cov-2-variants/lineage-proposals#1097 -JN.1.7.1 sars-cov-2-variants/lineage-proposals#1371 -JN.1.7.3 sars-cov-2-variants/lineage-proposals#1343 -JN.1.8.2 sars-cov-2-variants/lineage-proposals#1089 -KP.2.1 sars-cov-2-variants/lineage-proposals#1440 -KP.2.2 sars-cov-2-variants/lineage-proposals#1446 -KP.3 sars-cov-2-variants/lineage-proposals#1410 -JN.1.18.1 sars-cov-2-variants/lineage-proposals#1414 -JN.1.18.2 sars-cov-2-variants/lineage-proposals#1441 -JN.1.26 sars-cov-2-variants/lineage-proposals#1089 -JN.1.28.1 sars-cov-2-variants/lineage-proposals#1244 -KW.1 sars-cov-2-variants/lineage-proposals#1244 -KW.1.1 sars-cov-2-variants/lineage-proposals#1244 -JN.1.30.1 sars-cov-2-variants/lineage-proposals#1089 -KU.2 sars-cov-2-variants/lineage-proposals#1089 -JN.1.31 sars-cov-2-variants/lineage-proposals#1319 -JN.1.35 sars-cov-2-variants/lineage-proposals#1362 -JN.1.36 sars-cov-2-variants/lineage-proposals#1326 -JN.1.36.1 sars-cov-2-variants/lineage-proposals#1326 -JN.1.40 sars-cov-2-variants/lineage-proposals#1451 -JN.1.41 sars-cov-2-variants/lineage-proposals#1256 -JN.1.42.1 sars-cov-2-variants/lineage-proposals#1474 -JN.1.44 sars-cov-2-variants/lineage-proposals#987 -JN.13.1 sars-cov-2-variants/lineage-proposals#1386 -JQ.2.1 sars-cov-2-variants/lineage-proposals#1373 +JN.1.1.3 sars-cov-2-variants/lineage-proposals#1089 +KR.1.1 sars-cov-2-variants/lineage-proposals#1545 +KR.3 sars-cov-2-variants/lineage-proposals#1253 +JN.1.1.8 sars-cov-2-variants/lineage-proposals#1521 +JN.1.1.9 sars-cov-2-variants/lineage-proposals#1525 +LL.1 sars-cov-2-variants/lineage-proposals#1253 +LE.1 sars-cov-2-variants/lineage-proposals#1089 +LE.1.1 sars-cov-2-variants/lineage-proposals#1089 +LE.1.3.1 sars-cov-2-variants/lineage-proposals#1612 +JN.1.7.4 sars-cov-2-variants/lineage-proposals#1253 +JN.1.7.5 sars-cov-2-variants/lineage-proposals#1374 +LK.1 sars-cov-2-variants/lineage-proposals#1374 +LB.1 sars-cov-2-variants/lineage-proposals#1089 +LB.1.2.1 sars-cov-2-variants/lineage-proposals#1559 +LB.1.3.1 sars-cov-2-variants/lineage-proposals#1620 +KP.1.1.2 sars-cov-2-variants/lineage-proposals#1541 +KP.1.1.3 sars-cov-2-variants/lineage-proposals#1502 +LP.1.1 sars-cov-2-variants/lineage-proposals#1633 +KP.1.2 sars-cov-2-variants/lineage-proposals#1097 +KP.2.3 sars-cov-2-variants/lineage-proposals#1459 +KP.2.3.1 sars-cov-2-variants/lineage-proposals#1548 +KP.2.3.4 sars-cov-2-variants/lineage-proposals#1596 +KP.2.4 sars-cov-2-variants/lineage-proposals#1524 +KP.2.5 sars-cov-2-variants/lineage-proposals#1527 +KP.2.8 sars-cov-2-variants/lineage-proposals#1546 +KP.2.9 sars-cov-2-variants/lineage-proposals#1089 +KP.2.10 sars-cov-2-variants/lineage-proposals#1553 +KP.2.11 sars-cov-2-variants/lineage-proposals#1520 +KP.2.12 sars-cov-2-variants/lineage-proposals#1550 +KP.2.14 sars-cov-2-variants/lineage-proposals#1578 +KP.3.1.1 sars-cov-2-variants/lineage-proposals#1563 +MC.1 sars-cov-2-variants/lineage-proposals#1638 +KP.3.1.5 sars-cov-2-variants/lineage-proposals#1614 +KP.3.2.1 sars-cov-2-variants/lineage-proposals#1556 +KP.3.2.5 sars-cov-2-variants/lineage-proposals#1604 +KP.3.3 sars-cov-2-variants/lineage-proposals#1531 +KP.3.3.1 sars-cov-2-variants/lineage-proposals#1651 +KP.4.1 sars-cov-2-variants/lineage-proposals#1089 +KP.4.1.2 sars-cov-2-variants/lineage-proposals#1611 +KP.4.2 sars-cov-2-variants/lineage-proposals#1089 +KP.5 sars-cov-2-variants/lineage-proposals#1097 +KS.1.1 sars-cov-2-variants/lineage-proposals#1565 +JN.1.15.1 sars-cov-2-variants/lineage-proposals#1253 +LU.1 sars-cov-2-variants/lineage-proposals#1089 +LU.2 sars-cov-2-variants/lineage-proposals#1652 +LF.1.1 sars-cov-2-variants/lineage-proposals#1448 +LF.2 sars-cov-2-variants/lineage-proposals#1502 +LF.3.1.1 sars-cov-2-variants/lineage-proposals#1558 +LF.4.1 sars-cov-2-variants/lineage-proposals#1590 +JN.1.16.2 sars-cov-2-variants/lineage-proposals#1253 +LA.1 sars-cov-2-variants/lineage-proposals#1253 +LA.2 sars-cov-2-variants/lineage-proposals#1089 +JN.1.18.3 sars-cov-2-variants/lineage-proposals#1253 +MA.1 sars-cov-2-variants/lineage-proposals#1635 +JN.1.18.5 sars-cov-2-variants/lineage-proposals#1089 +JN.1.23.1 sars-cov-2-variants/lineage-proposals#1552 +JN.1.24.1 sars-cov-2-variants/lineage-proposals#1089 +LM.1 sars-cov-2-variants/lineage-proposals#1089 +KW.1.1.1 sars-cov-2-variants/lineage-proposals#1504 +LG.1 sars-cov-2-variants/lineage-proposals#1504 +JN.1.29.1 sars-cov-2-variants/lineage-proposals#1253 +JN.1.32.1 sars-cov-2-variants/lineage-proposals#1442 +JN.1.39.1 sars-cov-2-variants/lineage-proposals#1089 +JN.1.47.1 sars-cov-2-variants/lineage-proposals#1318 +JN.1.47.2 sars-cov-2-variants/lineage-proposals#1097 +JN.1.48.2 sars-cov-2-variants/lineage-proposals#1089 +MB.1.1 sars-cov-2-variants/lineage-proposals#1659 +JN.1.55.1 sars-cov-2-variants/lineage-proposals#1253 +JN.1.55.2 sars-cov-2-variants/lineage-proposals#1253 +JN.1.62 sars-cov-2-variants/lineage-proposals#1253 +JN.11.1 sars-cov-2-variants/lineage-proposals#1303 +JQ.2.1.1 sars-cov-2-variants/lineage-proposals#1089 JH.2 #2068 -GE.1.2.2 sars-cov-2-variants/lineage-proposals#1340 -XDD.1.1.1 sars-cov-2-variants/lineage-proposals#1450 -XDK.1 sars-cov-2-variants/lineage-proposals#1407 -XDP.1 sars-cov-2-variants/lineage-proposals#1358 +XDK.1.1 sars-cov-2-variants/lineage-proposals#1490 +XDK.1.2 sars-cov-2-variants/lineage-proposals#1407 +XDK.2 sars-cov-2-variants/lineage-proposals#1385 +XDK.3 sars-cov-2-variants/lineage-proposals#1511 +XDK.4.1 sars-cov-2-variants/lineage-proposals#1467 +XDK.6 sars-cov-2-variants/lineage-proposals#1572 +XDP.2 sars-cov-2-variants/lineage-proposals#1432 +XDQ.1.1 sars-cov-2-variants/lineage-proposals#1523 +XDQ.2 sars-cov-2-variants/lineage-proposals#1408 +XDQ.3 sars-cov-2-variants/lineage-proposals#1508 +XDR.1 sars-cov-2-variants/lineage-proposals#1542 +XDZ sars-cov-2-variants/lineage-proposals#1356 +XEB sars-cov-2-variants/lineage-proposals#1290 diff --git a/lineage_notes.txt b/lineage_notes.txt index 8bf188d0..1b3e11d4 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1053,14 +1053,14 @@ JN.1 Alias of B.1.1.529.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe JN.1.1 Alias of B.1.1.529.2.86.1.1.1, ORF1a:F499L, C11747T, France, from sars-cov-2-variants/lineage-proposals#987 JN.1.1.1 Alias of B.1.1.529.2.86.1.1.1.1, S:T572I on C9142T branch, France/Sweden/Poland, from sars-cov-2-variants/lineage-proposals#1097 JN.1.1.2 Alias of B.1.1.529.2.86.1.1.1.2, S:G181E, France, from sars-cov-2-variants/lineage-proposals#1147 -JN.1.1.3 Alias of B.1.1.529.2.86.1.1.1.3, S:R346T +JN.1.1.3 Alias of B.1.1.529.2.86.1.1.1.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 LT.1 Alias of B.1.1.529.2.86.1.1.1.3.1, S:F456V, L176F, USA/Canada JN.1.1.4 Alias of B.1.1.529.2.86.1.1.1.4, S:V1264L on C9142T branch, from #2476 JN.1.1.5 Alias of B.1.1.529.2.86.1.1.1.5, S:R346T on C9142T branch, from #2492 KR.1 Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L (22928C), after C28498T, from sars-cov-2-variants/lineage-proposals#1253 -KR.1.1 Alias of B.1.1.529.2.86.1.1.1.5.1.1, S:F59L +KR.1.1 Alias of B.1.1.529.2.86.1.1.1.5.1.1, S:F59L, from sars-cov-2-variants/lineage-proposals#1545 KR.1.2 Alias of B.1.1.529.2.86.1.1.1.5.1.2, S:R683Q -KR.3 Alias of B.1.1.529.2.86.1.1.1.5.3, S:F456L (22930A) +KR.3 Alias of B.1.1.529.2.86.1.1.1.5.3, S:F456L (22930A), from sars-cov-2-variants/lineage-proposals#1253 KR.4 Alias of B.1.1.529.2.86.1.1.1.5.4, S:Q218E KR.5 Alias of B.1.1.529.2.86.1.1.1.5.5, ORF1a:L642F, ORF1a:T2087I, Brazil JN.1.1.6 Alias of B.1.1.529.2.86.1.1.1.6, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 @@ -1069,8 +1069,8 @@ KZ.1.1 Alias of B.1.1.529.2.86.1.1.1.6.1.1, S:R346T from #2548 KZ.1.1.1 Alias of B.1.1.529.2.86.1.1.1.6.1.1.1, S:T572I from #2548 JN.1.1.7 Alias of B.1.1.529.2.86.1.1.1.7, S:S31F, from sars-cov-2-variants/lineage-proposals#1157 LC.1 Alias of B.1.1.529.2.86.1.1.1.7.1, S:R346T -JN.1.1.8 Alias of B.1.1.529.2.86.1.1.1.8, S:F456L (22930A), S:H445P, ORF1a:S2083I, C850T -JN.1.1.9 Alias of B.1.1.529.2.86.1.1.1.9, G2035A, on C9142T branch, China +JN.1.1.8 Alias of B.1.1.529.2.86.1.1.1.8, S:F456L (22930A), S:H445P, ORF1a:S2083I, C850T, from sars-cov-2-variants/lineage-proposals#1521 +JN.1.1.9 Alias of B.1.1.529.2.86.1.1.1.9, G2035A, on C9142T branch, China, from sars-cov-2-variants/lineage-proposals#1525 JN.1.1.10 Alias of B.1.1.529.2.86.1.1.1.10, C23557T, Ukraine JN.1.2 Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1087 JN.1.2.1 Alias of B.1.1.529.2.86.1.1.2.1, S:H1101Y, Ireland, from sars-cov-2-variants/lineage-proposals#1322 @@ -1078,7 +1078,7 @@ JN.1.3 Alias of B.1.1.529.2.86.1.1.3, ORF8:Q18*, Netherlands JN.1.4 Alias of B.1.1.529.2.86.1.1.4, ORF1a:T170I, Denmark/Singapore, from #2381 JN.1.4.1 Alias of B.1.1.529.2.86.1.1.4.1, S:E654V, Ireland, from sars-cov-2-variants/lineage-proposals#1175 JN.1.4.2 Alias of B.1.1.529.2.86.1.1.4.2, S:N185D, after T18453C, USA, from #2462 -LL.1 Alias of B.1.1.529.2.86.1.1.4.2.1, S:F456L (T22930A), S:S680F, USA +LL.1 Alias of B.1.1.529.2.86.1.1.4.2.1, S:F456L (T22930A), S:S680F, USA, from sars-cov-2-variants/lineage-proposals#1253 JN.1.4.3 Alias of B.1.1.529.2.86.1.1.4.3, S:T572I, USA, from #2487 KQ.1 Alias of B.1.1.529.2.86.1.1.4.3.1, S:R346T, USA from #2487 JN.1.4.4 Alias of B.1.1.529.2.86.1.1.4.4, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 @@ -1087,11 +1087,11 @@ KV.1 Alias of B.1.1.529.2.86.1.1.4.5.1, S:S680F, after C28948T then A2356T KV.2 Alias of B.1.1.529.2.86.1.1.4.5.2, S:T572I, ORF1a:P971L, C11956T, USA, from sars-cov-2-variants/lineage-proposals#1097 JN.1.4.6 Alias of B.1.1.529.2.86.1.1.4.6, S:T572I, after T18453C, from sars-cov-2-variants/lineage-proposals#1097 JN.1.4.7 Alias of B.1.1.529.2.86.1.1.4.7, ORF3a:G18D -LE.1 Alias of B.1.1.529.2.86.1.1.4.7.1, S:R346T, Africa -LE.1.1 Alias of B.1.1.529.2.86.1.1.4.7.1.1, S:F456V +LE.1 Alias of B.1.1.529.2.86.1.1.4.7.1, S:R346T, Africa, from sars-cov-2-variants/lineage-proposals#1089 +LE.1.1 Alias of B.1.1.529.2.86.1.1.4.7.1.1, S:F456V, from sars-cov-2-variants/lineage-proposals#1089 LE.1.2 Alias of B.1.1.529.2.86.1.1.4.7.1.2, S:K304N LE.1.3 Alias of B.1.1.529.2.86.1.1.4.7.1.3, S:L84V, ORF7a:T120I, Kenya -LE.1.3.1 Alias of B.1.1.529.2.86.1.1.4.7.1.3.1, S:Q173K, S:F456L (T22928C), ORF7a:A66V +LE.1.3.1 Alias of B.1.1.529.2.86.1.1.4.7.1.3.1, S:Q173K, S:F456L (T22928C), ORF7a:A66V, from sars-cov-2-variants/lineage-proposals#1612 LE.2 Alias of B.1.1.529.2.86.1.1.4.7.2, S:R346S, C7423T JN.1.4.8 Alias of B.1.1.529.2.86.1.1.4.8, S:S60P, T13578C, USA，from #2625 JN.1.5 Alias of B.1.1.529.2.86.1.1.5, ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419 @@ -1101,14 +1101,15 @@ JN.1.7 Alias of B.1.1.529.2.86.1.1.7, S:T572I, S:E1150D, USA/France, from sars-c JN.1.7.1 Alias of B.1.1.529.2.86.1.1.7.1, S:R346K, England, from sars-cov-2-variants/lineage-proposals#1371 JN.1.7.2 Alias of B.1.1.529.2.86.1.1.7.2, ORF1b:C1563F, Americas JN.1.7.3 Alias of B.1.1.529.2.86.1.1.7.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1343 -JN.1.7.4 Alias of B.1.1.529.2.86.1.1.7.4, S:F456L (T22928C) -JN.1.7.5 Alias of B.1.1.529.2.86.1.1.7.5, ORF1a:H3395Y -LK.1 Alias of B.1.1.529.2.86.1.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada +JN.1.7.4 Alias of B.1.1.529.2.86.1.1.7.4, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1253 +JN.1.7.5 Alias of B.1.1.529.2.86.1.1.7.5, ORF1a:H3395Y, from sars-cov-2-variants/lineage-proposals#1374 +LK.1 Alias of B.1.1.529.2.86.1.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada, from sars-cov-2-variants/lineage-proposals#1374 LK.2 Alias of B.1.1.529.2.86.1.1.7.5.2, S:R346T LK.2.1 Alias of B.1.1.529.2.86.1.1.7.5.2.1, S:S455A, S:T547K, Central America JN.1.7.6 Alias of B.1.1.529.2.86.1.1.7.6, S:S60P, ORF1a:P1609S, Wales JN.1.7.7 Alias of B.1.1.529.2.86.1.1.7.7, ORF1b:K2557R JN.1.7.8 Alias of B.1.1.529.2.86.1.1.7.8, S:F456L (22930A), S:185-189del, N:365L, Central America +JN.1.7.9 Alias of B.1.1.529.2.86.1.1.7.9, G347A, C1057T, C7834T, S:F456L (22930A) JN.1.8 Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, after A12928G, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097 JN.1.8.2 Alias of B.1.1.529.2.86.1.1.8.2, S:R346T, after A12928G, from sars-cov-2-variants/lineage-proposals#1089 @@ -1118,16 +1119,23 @@ JN.1.8.4 Alias of B.1.1.529.2.86.1.1.8.4, S:G946R JN.1.9 Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada, from #2410 JN.1.9.1 Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V, from sars-cov-2-variants/lineage-proposals#1097 JN.1.9.2 Alias of B.1.1.529.2.86.1.1.9.2, S:R346T -LB.1 Alias of B.1.1.529.2.86.1.1.9.2.1, S:F456L (T22928C) +LB.1 Alias of B.1.1.529.2.86.1.1.9.2.1, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1089 LB.1.1 Alias of B.1.1.529.2.86.1.1.9.2.1.1, S:V1104L, Canada LB.1.2 Alias of B.1.1.529.2.86.1.1.9.2.1.2, ORF1b:G2068R -LB.1.2.1 Alias of B.1.1.529.2.86.1.1.9.2.1.2.1, S:R190T +LB.1.2.1 Alias of B.1.1.529.2.86.1.1.9.2.1.2.1, S:R190T, from sars-cov-2-variants/lineage-proposals#1559 LB.1.3 Alias of B.1.1.529.2.86.1.1.9.2.1.3, ORF1b:T1555I -LB.1.3.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.1, S:445P, N:T379I +LB.1.3.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.1, S:445P, N:T379I, from sars-cov-2-variants/lineage-proposals#1620 +LB.1.3.2 Alias of B.1.1.529.2.86.1.1.9.2.1.3.2, C25413T +MH.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.2.1, S:T572I LB.1.4 Alias of B.1.1.529.2.86.1.1.9.2.1.4, ORF1a:A1473V +LB.1.4.1 Alias of B.1.1.529.2.86.1.1.9.2.1.4.1, S:R190S LB.1.5 Alias of B.1.1.529.2.86.1.1.9.2.1.5, S:L1143F, ORF1b:T1621I, Asia，from sars-cov-2-variants/lineage-proposals#1557 LB.1.6 Alias of B.1.1.529.2.86.1.1.9.2.1.6, S:I670M, England/Canada LB.1.7 Alias of B.1.1.529.2.86.1.1.9.2.1.7, ORF1a:L1507F, G21123T +LB.1.7.1 Alias of B.1.1.529.2.86.1.1.9.2.1.7.1, S:N148T, USA-NY +LB.1.7.2 Alias of B.1.1.529.2.86.1.1.9.2.1.7.2, S:S680P +LB.1.7.3 Alias of B.1.1.529.2.86.1.1.9.2.1.7.3, S:R34C +LB.1.8 Alias of B.1.1.529.2.86.1.1.9.2.1.8, ORF1a:I785V JN.1.10 Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135 JN.1.11 Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446 JN.1.11.1 Alias of B.1.1.529.2.86.1.1.11.1, S:F456L, after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253 @@ -1135,92 +1143,103 @@ KP.1 Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R, from sars-cov-2-variants/line KP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 KP.1.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1, S:K182N, after ORF1b:L2213F, from #2510 MG.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1.1, S:T572I, S:679N, ORF1a:V3091I -KP.1.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.2, S:P1162S, T2152C -KP.1.1.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3, C4999T, many with S:S31del +KP.1.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.2, S:P1162S, T2152C, from sars-cov-2-variants/lineage-proposals#1541 +KP.1.1.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3, C4999T, many with S:S31del, from sars-cov-2-variants/lineage-proposals#1502 LP.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1, S:M1229I,from sars-cov-2-variants/lineage-proposals#1591 -LP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1.1, S:S255F, Dominican Republic +LP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1.1, S:S255F, Dominican Republic, from sars-cov-2-variants/lineage-proposals#1633 LP.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.2, S:S71Y, ORF1b:T2286I LP.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.3, S:K182E, ORF1b:R276S, Singapore KP.1.1.4 Alias of B.1.1.529.2.86.1.1.11.1.1.1.4, S:R214H, C11866T, C23929T,from sars-cov-2-variants/lineage-proposals#1593 KP.1.1.5 Alias of B.1.1.529.2.86.1.1.11.1.1.1.5, S:F59S -KP.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.2, S:T572I +KP.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.2, S:T572I, from sars-cov-2-variants/lineage-proposals#1097 KP.2 Alias of B.1.1.529.2.86.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 KP.2.1 Alias of B.1.1.529.2.86.1.1.11.1.2.1, S:Q1201K, from sars-cov-2-variants/lineage-proposals#1440 KP.2.2 Alias of B.1.1.529.2.86.1.1.11.1.2.2, S:F59L, S:K1266R, from sars-cov-2-variants/lineage-proposals#1446 -KP.2.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3, S:H146Q, ORF3a:K67N, S:31del -KP.2.3.1 Alias of B.1.1.529.2.86.1.1.11.1.2.3.1, S:A475V +KP.2.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3, S:H146Q, ORF3a:K67N, S:31del, from sars-cov-2-variants/lineage-proposals#1459 +KP.2.3.1 Alias of B.1.1.529.2.86.1.1.11.1.2.3.1, S:A475V, from sars-cov-2-variants/lineage-proposals#1548 KP.2.3.2 Alias of B.1.1.529.2.86.1.1.11.1.2.3.2, S:G184V KP.2.3.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3.3, S:N185T -KP.2.3.4 Alias of B.1.1.529.2.86.1.1.11.1.2.3.4, S:445P, A15759G, C27804T -KP.2.4 Alias of B.1.1.529.2.86.1.1.11.1.2.4, S:T250N -KP.2.5 Alias of B.1.1.529.2.86.1.1.11.1.2.5, S:N185D +KP.2.3.4 Alias of B.1.1.529.2.86.1.1.11.1.2.3.4, S:445P, A15759G, C27804T, from sars-cov-2-variants/lineage-proposals#1596 +KP.2.4 Alias of B.1.1.529.2.86.1.1.11.1.2.4, S:T250N, from sars-cov-2-variants/lineage-proposals#1524 +KP.2.5 Alias of B.1.1.529.2.86.1.1.11.1.2.5, S:N185D, from sars-cov-2-variants/lineage-proposals#1527 KP.2.6 Alias of B.1.1.529.2.86.1.1.11.1.2.6, S:W64R KP.2.7 Alias of B.1.1.529.2.86.1.1.11.1.2.7, S:S31F, after T22795G -KP.2.8 Alias of B.1.1.529.2.86.1.1.11.1.2.8, S:S60P -KP.2.9 Alias of B.1.1.529.2.86.1.1.11.1.2.9, S:T572I -KP.2.10 Alias of B.1.1.529.2.86.1.1.11.1.2.10, S:F59S, Singapore -KP.2.11 Alias of B.1.1.529.2.86.1.1.11.1.2.11, S:F56V, ORF1a:T2093I, England -KP.2.12 Alias of B.1.1.529.2.86.1.1.11.1.2.12, S:V1176F, G25088T, Australia +KP.2.8 Alias of B.1.1.529.2.86.1.1.11.1.2.8, S:S60P, from sars-cov-2-variants/lineage-proposals#1546 +KP.2.9 Alias of B.1.1.529.2.86.1.1.11.1.2.9, S:T572I, from sars-cov-2-variants/lineage-proposals#1089 +KP.2.10 Alias of B.1.1.529.2.86.1.1.11.1.2.10, S:F59S, Singapore, from sars-cov-2-variants/lineage-proposals#1553 +KP.2.11 Alias of B.1.1.529.2.86.1.1.11.1.2.11, S:F56V, ORF1a:T2093I, England, from sars-cov-2-variants/lineage-proposals#1520 +KP.2.12 Alias of B.1.1.529.2.86.1.1.11.1.2.12, S:V1176F, G25088T, Australia, from sars-cov-2-variants/lineage-proposals#1550 KP.2.13 Alias of B.1.1.529.2.86.1.1.11.1.2.13, S:K478E, N:P6T, C9565T, C24553T, USA/Canada -KP.2.14 Alias of B.1.1.529.2.86.1.1.11.1.2.14, S:G184V, S:S31F +KP.2.14 Alias of B.1.1.529.2.86.1.1.11.1.2.14, S:G184V, S:S31F, from sars-cov-2-variants/lineage-proposals#1578 KP.2.15 Alias of B.1.1.529.2.86.1.1.11.1.2.15, A10861G, S:31del, USA/Canada KP.2.16 Alias of B.1.1.529.2.86.1.1.11.1.2.16, ORF8:F6S KP.2.17 Alias of B.1.1.529.2.86.1.1.11.1.2.17, S:G35R, C23758T, C7765T, T14418C, Singapore KP.3 Alias of B.1.1.529.2.86.1.1.11.1.3, S:Q493E, from sars-cov-2-variants/lineage-proposals#1410 KP.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1, G15372T, A19722G -KP.3.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1, ORF1a:S4286C, C12616T, S:S31del, Spain -MC.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1, S:T572I +KP.3.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1, ORF1a:S4286C, C12616T, S:S31del, Spain, from sars-cov-2-variants/lineage-proposals#1563 +MC.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1, S:T572I, from sars-cov-2-variants/lineage-proposals#1638 KP.3.1.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.2, S:S151I，from sars-cov-2-variants/lineage-proposals#1589 KP.3.1.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.3, S:S31F,from sars-cov-2-variants/lineage-proposals#1576 KP.3.1.4 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4, ORF1b:P1675S,from #2627 -KP.3.1.5 Alias of B.1.1.529.2.86.1.1.11.1.3.1.5, S:N556K, ORF1a:Q998H, ORF3a:I186V, England +MM.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4.1, S:S680P, Europe +MM.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4.2, S:G35R, S:N185D +KP.3.1.5 Alias of B.1.1.529.2.86.1.1.11.1.3.1.5, S:N556K, ORF1a:Q998H, ORF3a:I186V, England, from sars-cov-2-variants/lineage-proposals#1614 +KP.3.1.6 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6, T19305C +MK.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.1, S:S31F, UK +MK.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.2, S:D745G, after E:L21F KP.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2, A2611C, C22858T -KP.3.2.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.1, S:A263V, Australia/Singapore +KP.3.2.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.1, S:A263V, Australia/Singapore, from sars-cov-2-variants/lineage-proposals#1556 KP.3.2.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2.2, S:W258R KP.3.2.3 Alias of B.1.1.529.2.86.1.1.11.1.3.2.3, ORF3a:S40P, C11518T LW.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.3.1, S:K182E, England KP.3.2.4 Alias of B.1.1.529.2.86.1.1.11.1.3.2.4, ORF3a:L73F -KP.3.2.5 Alias of B.1.1.529.2.86.1.1.11.1.3.2.5, S:V62F -KP.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3, N:R204P -KP.3.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.1, S:T547K, ORF3a:F87S +KP.3.2.5 Alias of B.1.1.529.2.86.1.1.11.1.3.2.5, S:V62F, from sars-cov-2-variants/lineage-proposals#1604 +KP.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3, N:R204P, from sars-cov-2-variants/lineage-proposals#1531 +KP.3.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.1, S:T547K, ORF3a:F87S, from sars-cov-2-variants/lineage-proposals#1651 KP.3.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.2, S:A435S, ORF1a:N4134T, England/Canada +KP.3.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3, G9424T, Japan/Canada +ML.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.1, S:681H +ML.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.2, S:Q677H, USA +KP.3.4 Alias of B.1.1.529.2.86.1.1.11.1.3.4, ORF3a:L73F, C25521T, Asia +KP.3.4.1 Alias of B.1.1.529.2.86.1.1.11.1.3.4.1, S:S31F, N:A134V, ORF1a:E1192K +KP.3.5 Alias of B.1.1.529.2.86.1.1.11.1.3.5, S:G213E, most with C1420T, America KP.4 Alias of B.1.1.529.2.86.1.1.11.1.4, C6070T, India -KP.4.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1, S:R346T, C19884T -KP.4.1.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1.1, S:W258R, India -KP.4.1.2 Alias of B.1.1.529.2.86.1.1.11.1.4.1.2, S:L441V +KP.4.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1, S:R346T, C19884T, from sars-cov-2-variants/lineage-proposals#1089 +KP.4.1.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1.1, S:W258R, India from #2521 +KP.4.1.2 Alias of B.1.1.529.2.86.1.1.11.1.4.1.2, S:L441V, from sars-cov-2-variants/lineage-proposals#1611 KP.4.1.3 Alias of B.1.1.529.2.86.1.1.11.1.4.1.3, ORF1a:M598V, A5245G, S:31del -KP.4.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2, S:R346T, S:K187R +KP.4.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2, S:R346T, S:K187R, from sars-cov-2-variants/lineage-proposals#1089 KP.4.2.1 Alias of B.1.1.529.2.86.1.1.11.1.4.2.1, S:S31F KP.4.2.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2.2, S:F59I KP.4.2.3 Alias of B.1.1.529.2.86.1.1.11.1.4.2.3, S:G35R, ORF1a:G519S, ORF1a:I2227V -KP.5 Alias of B.1.1.529.2.86.1.1.11.1.5, S:T572I +KP.5 Alias of B.1.1.529.2.86.1.1.11.1.5, S:T572I, from sars-cov-2-variants/lineage-proposals#1097 JN.1.12 Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T, from sars-cov-2-variants/lineage-proposals#1253 JN.1.13 Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T, C25680T, USA, from #2464 JN.1.13.1 Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA, from sars-cov-2-variants/lineage-proposals/issues/1386 KS.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 -KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:T22N, Singapore/Taiwan/Canada +KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:T22N, Singapore/Taiwan/Canada, from sars-cov-2-variants/lineage-proposals#1565 KS.1.2 Alias of B.1.1.529.2.86.1.1.13.1.2, S:T678I, Russia KS.1.3 Alias of B.1.1.529.2.86.1.1.13.1.3, S:V642A, Dominican Republic JN.1.14 Alias of B.1.1.529.2.86.1.1.14, S:R346S, after C26894T, C25680T, USA JN.1.15 Alias of B.1.1.529.2.86.1.1.15, S:A688V -JN.1.15.1 Alias of B.1.1.529.2.86.1.1.15.1, S:F456L, ORF3a:R122S, Ecuador -LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T, after C19269T -LU.2 Alias of B.1.1.529.2.86.1.1.15.1.2, S:R346T, after T20865C +JN.1.15.1 Alias of B.1.1.529.2.86.1.1.15.1, S:F456L, ORF3a:R122S, Ecuador, from sars-cov-2-variants/lineage-proposals#1253 +LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T, after C19269T, from sars-cov-2-variants/lineage-proposals#1089 +LU.2 Alias of B.1.1.529.2.86.1.1.15.1.2, S:R346T, after T20865C, from sars-cov-2-variants/lineage-proposals#1652 JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 JN.1.16.1 Alias of B.1.1.529.2.86.1.1.16.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 LF.1 Alias of B.1.1.529.2.86.1.1.16.1.1, ORF1a:A1268T, ORF1a:S2103F -LF.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1, S:P1263L +LF.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1, S:P1263L, from sars-cov-2-variants/lineage-proposals#1448 LF.1.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1.1, S:S31-, T19209C,from sars-cov-2-variants/lineage-proposals#1502 -LF.2 Alias of B.1.1.529.2.86.1.1.16.1.2, ORF1a:K247R, ORF3a:Y184H, many with S:S31del +LF.2 Alias of B.1.1.529.2.86.1.1.16.1.2, ORF1a:K247R, ORF3a:Y184H, many with S:S31del, from sars-cov-2-variants/lineage-proposals#1502 LF.3 Alias of B.1.1.529.2.86.1.1.16.1.3, ORF1a:A4285V, Peru LF.3.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1, S:445P，from sars-cov-2-variants/lineage-proposals#1558 -LF.3.1.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1.1, S:L1143F, USA-CO +LF.3.1.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1.1, S:L1143F, USA-CO, from sars-cov-2-variants/lineage-proposals#1558 LF.4 Alias of B.1.1.529.2.86.1.1.16.1.4, N:R385K, ORF1a:T4368I -LF.4.1 Alias of B.1.1.529.2.86.1.1.16.1.4.1, S:31del, ORF1a:G519S, ORF8:Q29* +LF.4.1 Alias of B.1.1.529.2.86.1.1.16.1.4.1, S:31del, ORF1a:G519S, ORF8:Q29*, from sars-cov-2-variants/lineage-proposals#1590 LF.5 Alias of B.1.1.529.2.86.1.1.16.1.5, S:T33A, S:N185D, C28660T -JN.1.16.2 Alias of B.1.1.529.2.86.1.1.16.2, C4777T -LA.1 Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T -LA.2 Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I +JN.1.16.2 Alias of B.1.1.529.2.86.1.1.16.2, C4777T, from sars-cov-2-variants/lineage-proposals#1253 +LA.1 Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1253 +LA.2 Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I, from sars-cov-2-variants/lineage-proposals#1089 JN.1.16.3 Alias of B.1.1.529.2.86.1.1.16.3, S:T572I JN.1.17 Alias of B.1.1.529.2.86.1.1.17, S:A222V, USA JN.1.18 Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 @@ -1230,48 +1249,50 @@ LQ.1.1 Alias of B.1.1.529.2.86.1.1.18.1.1.1, S:P272H,from #2596 LQ.2 Alias of B.1.1.529.2.86.1.1.18.1.2, S:N556K, China,from sars-cov-2-variants/lineage-proposals#1414 LQ.3 Alias of B.1.1.529.2.86.1.1.18.1.3, ORF1a:T1761I, Russia JN.1.18.2 Alias of B.1.1.529.2.86.1.1.18.2, S:F59S, after C4331T, T22321C, from sars-cov-2-variants/lineage-proposals#1441 -LZ.1 Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V -LZ.1.1 Alias of B.1.1.529.2.86.1.1.18.2.1.1, S:P217S, S:N1125S -JN.1.18.3 Alias of B.1.1.529.2.86.1.1.18.3, S:F456V (T22928G) -MA.1 Alias of B.1.1.529.2.86.1.1.18.3.1, S:R190S, S:31del +LZ.1 Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V from #2654 +LZ.1.1 Alias of B.1.1.529.2.86.1.1.18.2.1.1, S:P217S, S:N1125S from #2654 +JN.1.18.3 Alias of B.1.1.529.2.86.1.1.18.3, S:F456V (T22928G), from sars-cov-2-variants/lineage-proposals#1253 +MA.1 Alias of B.1.1.529.2.86.1.1.18.3.1, S:R190S, S:31del, from sars-cov-2-variants/lineage-proposals#1635 JN.1.18.4 Alias of B.1.1.529.2.86.1.1.18.4, S:F456L (T22930G), ORF6:I60T, T23036C, Ghana from #2567 LH.1 Alias of B.1.1.529.2.86.1.1.18.4.1, S:K182I from #2567 LH.2 Alias of B.1.1.529.2.86.1.1.18.4.2, S:I197V, S:P251H from #2567 -JN.1.18.5 Alias of B.1.1.529.2.86.1.1.18.5, S:F456L (T22930A) +JN.1.18.5 Alias of B.1.1.529.2.86.1.1.18.5, S:F456L (T22930A), from sars-cov-2-variants/lineage-proposals#1089 LS.1 Alias of B.1.1.529.2.86.1.1.18.5.1, S:Y28H, S:L189A, S:184-188del, ORF1a:E940D -JN.1.18.6 Alias of B.1.1.529.2.86.1.1.18.6, S:F456L (T22928C), S:F59S -LY.1 Alias of B.1.1.529.2.86.1.1.18.6.1, S:F65Y, S:Q183P +JN.1.18.6 Alias of B.1.1.529.2.86.1.1.18.6, S:F456L (T22928C), S:F59S from #2623 +LY.1 Alias of B.1.1.529.2.86.1.1.18.6.1, S:F65Y, S:Q183P from #2623 LY.2 Alias of B.1.1.529.2.86.1.1.18.6.2, S:Q183H, C2143T -JN.1.18.7 Alias of B.1.1.529.2.86.1.1.18.7, S:F59S, S:D1260Y +JN.1.18.7 Alias of B.1.1.529.2.86.1.1.18.7, S:T22N, S:F59S, S:D1260Y from #2623 +MN.1 Alias of B.1.1.529.2.86.1.1.18.7.1, S:D80Y, S:P174S, S:S689N, England/Wales JN.1.19 Alias of B.1.1.529.2.86.1.1.19, ORF8:I71V JN.1.20 Alias of B.1.1.529.2.86.1.1.20, S:S31F, directly on JN.1 polytomy JN.1.21 Alias of B.1.1.529.2.86.1.1.21, S:H1058Y, from sars-cov-2-variants/lineage-proposals#1162 JN.1.22 Alias of B.1.1.529.2.86.1.1.22, ORF1a:S505F, C13019T, from #2465 JN.1.23 Alias of B.1.1.529.2.86.1.1.23, S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488 -JN.1.23.1 Alias of B.1.1.529.2.86.1.1.23.1, S:V1264L, S:N137K, Brazil +JN.1.23.1 Alias of B.1.1.529.2.86.1.1.23.1, S:V1264L, S:N137K, Brazil, from sars-cov-2-variants/lineage-proposals#1552 JN.1.24 Alias of B.1.1.529.2.86.1.1.24, S:C1243F, USA -JN.1.24.1 Alias of B.1.1.529.2.86.1.1.24.1, S:R346T +JN.1.24.1 Alias of B.1.1.529.2.86.1.1.24.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 JN.1.25 Alias of B.1.1.529.2.86.1.1.25, C706T, A7708T, India JN.1.25.1 Alias of B.1.1.529.2.86.1.1.25.1, S:R346T, India -LM.1 Alias of B.1.1.529.2.86.1.1.25.1.1, S:F456L +LM.1 Alias of B.1.1.529.2.86.1.1.25.1.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1089 JN.1.26 Alias of B.1.1.529.2.86.1.1.26, S:R346T, after C26894T, USA, from sars-cov-2-variants/lineage-proposals#1089 JN.1.27 Alias of B.1.1.529.2.86.1.1.27, S:M153I, after C26894T, C25680T, USA, from sars-cov-2-variants/lineage-proposals#1403 JN.1.28 Alias of B.1.1.529.2.86.1.1.28, C24034T, A29700G, East Asia/Oceania JN.1.28.1 Alias of B.1.1.529.2.86.1.1.28.1, ORF1a:P1640L, C19545T, C24370T, from sars-cov-2-variants/lineage-proposals#1244 KW.1 Alias of B.1.1.529.2.86.1.1.28.1.1, S:T572I, Australia, from sars-cov-2-variants/lineage-proposals#1244 KW.1.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1, S:F456L, ORF1b:R2009K, Australia/Japan, from sars-cov-2-variants/lineage-proposals#1244 -KW.1.1.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1, S:T95S, Australia -LG.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1.1, S:R346T, Australia +KW.1.1.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1, S:T95S, Australia, from sars-cov-2-variants/lineage-proposals#1504 +LG.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1.1, S:R346T, Australia, from sars-cov-2-variants/lineage-proposals#1504 KW.1.2 Alias of B.1.1.529.2.86.1.1.28.1.1.2, S:K529T, Australia JN.1.29 Alias of B.1.1.529.2.86.1.1.29, ORF1a:T3224A, after C2644T, Brazil -JN.1.29.1 Alias of B.1.1.529.2.86.1.1.29.1, S:F456L +JN.1.29.1 Alias of B.1.1.529.2.86.1.1.29.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 +MJ.1 Alias of B.1.1.529.2.86.1.1.29.1.1.1, S:R346T, S:S31P, ORF1a:E2070K JN.1.30 Alias of B.1.1.529.2.86.1.1.30, G21255T JN.1.30.1 Alias of B.1.1.529.2.86.1.1.30.1, S:R346T, after T7789C, India, from sars-cov-2-variants/lineage-proposals#1089 KU.1 Alias of B.1.1.529.2.86.1.1.30.1.1, S:K182Q KU.2 Alias of B.1.1.529.2.86.1.1.30.1.2, S:F456L, from sars-cov-2-variants/lineage-proposals#1089 JN.1.31 Alias of B.1.1.529.2.86.1.1.31, ORF3a:V13L, C19186T, from sars-cov-2-variants/lineage-proposals#1319 JN.1.32 Alias of B.1.1.529.2.86.1.1.32, S:T572I, directly on JN.1 polytomy -JN.1.32.1 Alias of B.1.1.529.2.86.1.1.32.1, S:Q183H +JN.1.32.1 Alias of B.1.1.529.2.86.1.1.32.1, S:Q183H, from sars-cov-2-variants/lineage-proposals#1442 JN.1.34 Alias of B.1.1.529.2.86.1.1.34, S:S704L JN.1.35 Alias of B.1.1.529.2.86.1.1.35, S:S680Y, after T18471C, Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#1362 JN.1.36 Alias of B.1.1.529.2.86.1.1.36, S:Q677H, after A29086T, from sars-cov-2-variants/lineage-proposals#1326 @@ -1279,7 +1300,7 @@ JN.1.36.1 Alias of B.1.1.529.2.86.1.1.36.1, S:S680F, South Korea, from sars-cov- JN.1.37 Alias of B.1.1.529.2.86.1.1.37, S:S680F JN.1.38 Alias of B.1.1.529.2.86.1.1.38, ORF1b:R1736K, USA JN.1.39 Alias of B.1.1.529.2.86.1.1.39, G2782T -JN.1.39.1 Alias of B.1.1.529.2.86.1.1.39.1, S:R346T, S:F456L, C21034T, T25631C, A16011G, T6913C +JN.1.39.1 Alias of B.1.1.529.2.86.1.1.39.1, S:R346T, S:F456L, C21034T, T25631C, A16011G, T6913C, from sars-cov-2-variants/lineage-proposals#1089 JN.1.39.2 Alias of B.1.1.529.2.86.1.1.39.2, S:R346T, T111C JN.1.39.3 Alias of B.1.1.529.2.86.1.1.39.3, S:A67V, T111C, C5512T, China from #2498 (originally known as JN.1.33) JN.1.40 Alias of B.1.1.529.2.86.1.1.40, S:S31P, Mexico, from sars-cov-2-variants/lineage-proposals#1451 @@ -1294,17 +1315,17 @@ JN.1.44.1 Alias of B.1.1.529.2.86.1.1.44.1, S:R346T, Cameroon/France,from sars-c JN.1.45 Alias of B.1.1.529.2.86.1.1.45, G18756T JN.1.46 Alias of B.1.1.529.2.86.1.1.46, ORF1a:L3116F, T4885C JN.1.47 Alias of B.1.1.529.2.86.1.1.47, C8074T, C7594T -JN.1.47.1 Alias of B.1.1.529.2.86.1.1.47.1, S:S221L, USA/Mexico -JN.1.47.2 Alias of B.1.1.529.2.86.1.1.47.2, S:T572I, S:R683Q, USA +JN.1.47.1 Alias of B.1.1.529.2.86.1.1.47.1, S:S221L, USA/Mexico, from sars-cov-2-variants/lineage-proposals#1318 +JN.1.47.2 Alias of B.1.1.529.2.86.1.1.47.2, S:T572I, S:R683Q, USA, from sars-cov-2-variants/lineage-proposals#1097 JN.1.48 Alias of B.1.1.529.2.86.1.1.48, G29134T, after T18471C, India JN.1.48.1 Alias of B.1.1.529.2.86.1.1.48.1, S:S60P, S:R346T, S:F456L, after ORF3a:A99V, on T3913A, C8092T branch from #2547 LD.1 Alias of B.1.1.529.2.86.1.1.48.1.1, S:T572I from #2547 -JN.1.48.2 Alias of B.1.1.529.2.86.1.1.48.2, S:R346T, ORF1a:A427V, A3829G, India +JN.1.48.2 Alias of B.1.1.529.2.86.1.1.48.2, S:R346T, ORF1a:A427V, A3829G, India, from sars-cov-2-variants/lineage-proposals#1089 JN.1.48.3 Alias of B.1.1.529.2.86.1.1.48.3, S:60P, S:R346T, S:F456L, ORF3a:S60F, ORF1a:T1761I, on T3913A, C8092T branch, South Africa JN.1.49 Alias of B.1.1.529.2.86.1.1.49, ORF3a:T89I, India JN.1.49.1 Alias of B.1.1.529.2.86.1.1.49.1, S:R346T MB.1 Alias of B.1.1.529.2.86.1.1.49.1.1, S:F456V (T22928G), S:S31F -MB.1.1 Alias of B.1.1.529.2.86.1.1.49.1.1.1, S:ST22N, S:K182N +MB.1.1 Alias of B.1.1.529.2.86.1.1.49.1.1.1, S:T22N, S:K182N, from sars-cov-2-variants/lineage-proposals#1659 JN.1.49.2 Alias of B.1.1.529.2.86.1.1.49.2, S:F456L JN.1.50 Alias of B.1.1.529.2.86.1.1.50, S:H445P,S:F456L, S:A67V, S:L249F, Europe from #2587 JN.1.50.1 Alias of B.1.1.529.2.86.1.1.50.1, S:R346T from #2587 @@ -1321,8 +1342,8 @@ LN.1.1 Alias of B.1.1.529.2.86.1.1.53.1.1.1, S:F456L, S:478I JN.1.54 Alias of B.1.1.529.2.86.1.1.54, A9085G JN.1.54.1 Alias of B.1.1.529.2.86.1.1.54.1, S:F456L, S:V407I, Spain, from #2584 JN.1.55 Alias of B.1.1.529.2.86.1.1.55, ORF1a:K399R -JN.1.55.1 Alias of B.1.1.529.2.86.1.1.55.1, S:F456L, ORF1a:T1017I, Thailand -JN.1.55.2 Alias of B.1.1.529.2.86.1.1.55.2, S:F456L, ORF1b:P2321H, Brazil +JN.1.55.1 Alias of B.1.1.529.2.86.1.1.55.1, S:F456L, ORF1a:T1017I, Thailand, from sars-cov-2-variants/lineage-proposals#1253 +JN.1.55.2 Alias of B.1.1.529.2.86.1.1.55.2, S:F456L, ORF1b:P2321H, Brazil, from sars-cov-2-variants/lineage-proposals#1253 JN.1.56 Alias of B.1.1.529.2.86.1.1.56, Orf3a:Q213K JN.1.56.1 Alias of B.1.1.529.2.86.1.1.56.1, S:G181R, S:R346T, S:F456V, ORF1a:T1638I, Sinapore/South Korea from #2582 JN.1.57 Alias of B.1.1.529.2.86.1.1.57, ORF1b:A1219S, A11947G @@ -1336,20 +1357,21 @@ JN.1.58.3 Alias of B.1.1.529.2.86.1.1.58.3, S:S31F JN.1.59 Alias of B.1.1.529.2.86.1.1.59, ORF1a:A1204S JN.1.60 Alias of B.1.1.529.2.86.1.1.60, C4543T JN.1.61 Alias of B.1.1.529.2.86.1.1.61, S:K444R, Brazil -JN.1.62 Alias of B.1.1.529.2.86.1.1.62, S:F456L (22928C), S:V62F, S:R681H +JN.1.62 Alias of B.1.1.529.2.86.1.1.62, S:F456L (22928C), S:V62F, S:R681H, from sars-cov-2-variants/lineage-proposals#1253 JN.1.63 Alias of B.1.1.529.2.86.1.1.63, ORF1b:K82R JN.1.63.1 Alias of B.1.1.529.2.86.1.1.63.1, ORF1a:D1513E, ORF1a:A2529S, Asia -JN.1.64 Alias of B.1.1.529.2.86.1.1.64, ORF1a:N2147S (A6705G) -JN.1.64.1 Alias of B.1.1.529.2.86.1.1.64.1, S:R346T -MD.1 Alias of B.1.1.529.2.86.1.1.64.1.1, S:F456L (T22930A) -MD.1.1 Alias of B.1.1.529.2.86.1.1.64.1.1.1, S:K679R -MD.2 Alias of B.1.1.529.2.86.1.1.64.1.2, S:F456V, ORF1a:T2800I -MD.3 Alias of B.1.1.529.2.86.1.1.64.1.3, C1060T, C9319T, C28657T -MD.3.1 Alias of B.1.1.529.2.86.1.1.64.1.3.1, S:F456L (T22928C), ORF3a:L106F, C10138T, South Africa +JN.1.64 Alias of B.1.1.529.2.86.1.1.64, ORF1a:N2147S (A6705G) from #2560 +JN.1.64.1 Alias of B.1.1.529.2.86.1.1.64.1, S:R346T from #2560 +MD.1 Alias of B.1.1.529.2.86.1.1.64.1.1, S:F456L (T22930A) from #2560 +MD.1.1 Alias of B.1.1.529.2.86.1.1.64.1.1.1, S:K679R from #2560 +MD.2 Alias of B.1.1.529.2.86.1.1.64.1.2, S:F456V, ORF1a:T2800I from #2560 +MD.3 Alias of B.1.1.529.2.86.1.1.64.1.3, C1060T, C9319T, C28657T from #2560 +MD.3.1 Alias of B.1.1.529.2.86.1.1.64.1.3.1, S:F456L (T22928C), ORF3a:L106F, C10138T, South Africa from #2560 JN.1.65 Alias of B.1.1.529.2.86.1.1.65, S:T572I, after T23629C, G25647T, A5053G, Spain from #2461 JN.1.65.1 Alias of B.1.1.529.2.86.1.1.65.1, S:F456L (22928C), A10420G, C5884T, C29149T, C20483T, Spain from #2461 MF.1 Alias of B.1.1.529.2.86.1.1.65.1.1, S:R346T, T21673C, pre-22981T from #2461 MF.2 Alias of B.1.1.529.2.86.1.1.65.1.2, S:S60P, S:W64L from #2461 +JN.1.66 Alias of B.1.1.529.2.86.1.1.66, S:H445P, S:F456L (T22930A), S:T1117I, ORF1a:L2146F, ORF3a:L106F, Iceland/Sweden JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284 JN.2.1 Alias of B.1.1.529.2.86.1.2.1, S:S31F, Sweden/Australia JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433 @@ -1371,7 +1393,7 @@ JN.8 Alias of B.1.1.529.2.86.1.8, S:T299I, Sweden/Denmark JN.9 Alias of B.1.1.529.2.86.1.9, S:M1229I, Netherlands JN.10 Alias of B.1.1.529.2.86.1.10, S:A475V, on T3565C branch with JN.1, Spain/France, from sars-cov-2-variants/lineage-proposals#954 JN.11 Alias of B.1.1.529.2.86.1.11, S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303 -JN.11.1 Alias of B.1.1.529.2.86.1.11.1, S:L455S +JN.11.1 Alias of B.1.1.529.2.86.1.11.1, S:L455S, from sars-cov-2-variants/lineage-proposals#1303 JN.12 Alias of B.1.1.529.2.86.1.12, S:F456V, ORF1a:A498G, from sars-cov-2-variants/lineage-proposals#1102 JN.13 Alias of B.1.1.529.2.86.1.13, A14397G JN.13.1 Alias of B.1.1.529.2.86.1.13.1, S:A475V, USA/Malaysia, from sars-cov-2-variants/lineage-proposals#1386 @@ -1386,7 +1408,7 @@ BA.2.86.3 Alias of B.1.1.529.2.86.3, C222T, C1960T, T12775C, South Africa JQ.1 Alias of B.1.1.529.2.86.3.1, S:T95I, Denmark/France/South Africa, from sars-cov-2-variants/lineage-proposals#906 JQ.2 Alias of B.1.1.529.2.86.3.2, S:R346T, G2944A, South Africa, from #2505 JQ.2.1 Alias of B.1.1.529.2.86.3.2.1, S:L455S, South Africa, from sars-cov-2-variants/lineage-proposals#1373 -JQ.2.1.1 Alias of B.1.1.529.2.86.3.2.1.1, S:F456L, South Africa +JQ.2.1.1 Alias of B.1.1.529.2.86.3.2.1.1, S:F456L, South Africa, from sars-cov-2-variants/lineage-proposals#1089 BA.2.86.4 Alias of B.1.1.529.2.86.4, S:A222V, ORF1a:V3892A, from sars-cov-2-variants/lineage-proposals#1032 BA.2.86.5 Alias of B.1.1.529.2.86.5, S:I197V, C5575T, T6085C, T23278C BA.2.86.6 Alias of B.1.1.529.2.86.6, C9226T @@ -1854,7 +1876,7 @@ FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan, fro FB.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.2 S:478R, USA/South Korea/Mongolia BQ.1.2.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2, S:K147E, S:R346T, S:V445A, West Africa, from #1861 JH.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.1, S:K182E, S:486A, S:S494P, S:E554K, from #2068 -JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068, from #2068, from #2068, from #2068 +JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068, from #2068, from #2068, from #2068, from #2068 BQ.1.2.3 Alias of B.1.1.529.5.3.1.1.1.1.1.2.3, E:V24L, Canada BQ.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.3, found globally, defined by S:E619Q, from #1082 BQ.1.3.1 Alias of B.1.1.529.5.3.1.1.1.1.1.3.1, C2509T, Spain @@ -4094,28 +4116,28 @@ XDH Recombinant lineage of BN.1.2.8 and XBB.1.9.1 (or XBB.1.22) (breakpoint betw XDJ Recombinant lineage of XBB.1.16.6 and HK.3.1 (breakpoint between 14857 and 16877), France, from sars-cov-2-variants/lineage-proposals#997 XDK Recombinant lineage of XBB.1.16.11 (likely) and JN.1.1.1 (breakpoint between 5315 and 6182), France, from #2415 XDK.1 S:R346T, G11596A, from sars-cov-2-variants/lineage-proposals#1407 -XDK.1.1 S:K182R, S:E213G, India -XDK.1.2 S:F456L -XDK.2 S:K679R, T4996A, C11173T, A23598G, C27297T -XDK.3 S:F456L, ORF1a:F3397L +XDK.1.1 S:K182R, S:E213G, India, from sars-cov-2-variants/lineage-proposals#1490 +XDK.1.2 S:F456L, from sars-cov-2-variants/lineage-proposals#1407 +XDK.2 S:K679R, T4996A, C11173T, A23598G, C27297T, from sars-cov-2-variants/lineage-proposals#1385 +XDK.3 S:F456L, ORF1a:F3397L, from sars-cov-2-variants/lineage-proposals#1511 XDK.4 C25626T -XDK.4.1 S:F456L, France/Luxembourg +XDK.4.1 S:F456L, France/Luxembourg, from sars-cov-2-variants/lineage-proposals#1467 XDK.5 S:F456L, C22388T, Spain from #2611 -XDK.6 S:F456L, S:R237K, S:Q1201K, England +XDK.6 S:F456L, S:R237K, S:Q1201K, England, from sars-cov-2-variants/lineage-proposals#1572 XDL Recombinant lineage of EG.5.1.1 and non-EG.5 (breakpoint between 25573-29624) with S:I1114T, most with S:L455F(G22927T), China, from #2351 XDM Recombinant lineage of XDA, GW.5, XDA (breakpoints between 22107-22926 and 24047-25838), from sars-cov-2-variants/lineage-proposals#1163 XDN Recombinant lineage of JN.1.1 and JD.1 (breakpoint between 24379 and 24989), from #2448 XDP Recombinant lineage of JN.1.4+T18453C and FL.15 (breakpoint between 26834 and 27809), from #2451 XDP.1 S:E1092D, after ORF1a:L397P, ORF1a:H388Y, from sars-cov-2-variants/lineage-proposals#1358 -XDP.2 S:E309Q, Brazil/Canada +XDP.2 S:E309Q, Brazil/Canada, from sars-cov-2-variants/lineage-proposals#1432 XDP.3 S:S255F, USA XDQ Recombinant lineage of BA.2.86.1 and FL.15.1.1 (breakpoint between 23605 and 24377), most with T22846C, Vietnam/Japan/South Korea, from #2481 XDQ.1 S:A475V, Japan/South Korea, from #2497 -XDQ.1.1 S:S60P, C1594T, Japan -XDQ.2 S:N487D, Vietnam -XDQ.3 S:681H, Indonesia +XDQ.1.1 S:S60P, C1594T, Japan, from sars-cov-2-variants/lineage-proposals#1523 +XDQ.2 S:N487D, Vietnam, from sars-cov-2-variants/lineage-proposals#1408 +XDQ.3 S:681H, Indonesia, from sars-cov-2-variants/lineage-proposals#1508 XDR Recombinant lineage of JD.1.1.1 and JN.1.1 (breakpoint between 11043 and 11726), Brazil, from #2477 -XDR.1 S:F59S, G6077T, A14031G, C26801T, Brazil/Peru +XDR.1 S:F59S, G6077T, A14031G, C26801T, Brazil/Peru, from sars-cov-2-variants/lineage-proposals#1542 XDS Recombinant lineage of EG.5.1.3, JN.3.2.1, EG.5.1.3 (breakpoints at 8294-8392 and 26834-27506), from sars-cov-2-variants/lineage-proposals#1267 XDT Recombinant lineage of BA.2.86.4, GK.1 (breakpoint between 23673-24378), Ireland/UK, from #2485 XDU Recombinant lineage of BA.2.86.1, XBB.1.16 (breakpoint between 11957-12729), Japan, from #2502 @@ -4123,9 +4145,9 @@ XDV Recombinant lineage of XDE, JN.1, XDE, JN.1 (breakpoints between 19327-21608 XDV.1 S:F456L (T22930A), on C11572T branch, Hong Kong XDW Recombinant lineage of JN.2 (T1030C branch), XDA (breakpoint between 23424-23603), Japan, from sars-cov-2-variants/lineage-proposals#1471 XDY Recombinant lineage of LB.1.2.1 and KP.3.2 (breakpoint between 22131-22599), Sweden/Spain, from sars-cov-2-variants/lineage-proposals#1559 -XDZ Recombinant lineage of JG.3 and JN.1.1.10 (breakpoint between 11043-12788), Europe/North America +XDZ Recombinant lineage of JG.3 and JN.1.1.10 (breakpoint between 11043-12788), Europe/North America, from sars-cov-2-variants/lineage-proposals#1356 XEA Recombinant lineage of JN.1.63.1 and EG.5 (breakpoint between 27057-27915), East Asia -XEB Recombinant lineage of FL.15, JN.1.4+T18453C, FL.15 (breakpoints at 774-896 and 26834-27809), USA +XEB Recombinant lineage of FL.15, JN.1.4+T18453C, FL.15 (breakpoints at 774-896 and 26834-27809), USA, from sars-cov-2-variants/lineage-proposals#1290 *A.2.1 Withdrawn: Lineage with sequences predominantly from Panama *A.8 Withdrawn: Indian lineage merged with A.9 *A.10 Withdrawn: Spanish lineage reassigned to A.5 diff --git a/lineages.csv b/lineages.csv index 8c68be0e..96cb5efc 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2526029,8 +2526029,6 @@ USA/NJ-CDC-LC1096894/2024,KT.1.2 USA/MI-SH_MSU-H05_I_0351_85/2023,KT.1.2 USA/KPMA269959/2024,KT.1.2 Canada/ON-PHL-202406135/2024,KP.3 -USA/CA-GBW-H20-361-5024/2024,KP.3 -USA/CA-GBW-H10-020-6514/2024,KP.3 England/WSI-331C9AF9/2024,JN.1.39.3 Singapore/R91MR100/2023,JN.1.39.3 Indonesia/JK-OUCRU-GSILab-1156349/2024,JN.1.39.3 @@ -2544315,25 +2544313,9 @@ Wales/CLIMB-CM7Y8J7M/2024,KP.3.1 Wales/CLIMB-CM7YJQUP/2024,KP.3.1 Wales/CLIMB-CM7YRA41/2024,KP.3.1 Wales/CLIMB-CM7YGD1F/2024,KP.3.1 -Australia/SA1347742/2024,KP.3.1 -Australia/SA1352669/2024,KP.3.1 -Canada/AB-ABPHL-117005/2024,KP.3.1 Canada/AB-ABPHL-117375/2024,KP.3.1 -Canada/AB-ABPHL-116670/2024,KP.3.1 -Australia/SA1372139/2024,KP.3.1 -USA/MD-CDC-QDX96017835/2024,KP.3.1 -USA/NY-CDC-QDX95677494/2024,KP.3.1 USA/2024CV0730/2024,KP.3.1 USA/AZ-ASPHL-0730/2024,KP.3.1 -Australia/SA1443993/2024,KP.3.1 -USA/FL-GBW-GKISBBBC38383/2024,KP.3.1 -Singapore/R22MQ59/2024,KP.3.1 -NewZealand/24YA3351/2024,KP.3.1 -USA/CA-GBW-GKISBBBC31162/2024,KP.3.1 -USA/UT-UPHL-240502478839/2024,KP.3.1 -USA/CA-CDPH-500136258/2024,KP.3.1 -USA/PA-CDC-LC1103149/2024,KP.3.1 -USA/SC-CDC-LC1102747/2024,KP.3.1 Australia/NSW-ICPMR-53586/2024,KP.3.1 Australia/NSW-ICPMR-53703/2024,KP.3.1 Australia/QLD0x014351/2024,KP.3.1 @@ -2544471,7 +2544453,6 @@ USA/OH-ODH-SC4031761/2024,KP.3 USA/OH-ODH-SC4031629/2024,KP.3 Canada/BC-BCCDC-709225/2024,KP.3 Canada/BC-BCCDC-709203/2024,KP.3 -USA/CA-KP002332/2024,KP.3 Singapore/R22MQ73/2024,KP.3 USA/NJ-CDC-LC1102889/2024,KP.3 USA/NJ-CDC-LC1102856/2024,KP.3 @@ -2544500,13 +2544481,6 @@ Australia/SA1450901/2024,KP.3 Australia/SA1448835/2024,KP.3 Australia/SA1443596/2024,KP.3 Australia/SA1389909/2024,KP.3 -Singapore/R19MQ45/2024,KP.3 -Thailand/NIC_BKK_1049/2024,KP.3 -Singapore/R19MQ90/2024,KP.3 -Singapore/R21MQ41/2024,KP.3 -USA/TX-KVI400696/2024,KP.3 -Taiwan/CDC-W37461/2024,KP.3 -USA/NY-CDC-LC1102765/2024,KP.3 USA/NY-GBW-GKISBBBB60523/2024,KP.3 USA/NY-GBW-GKPLAAAA13636/2024,KP.3 Canada/ON-PHL-202407701/2024,KP.3 @@ -2544953,35 +2544927,6 @@ Australia/QLD0x0143C9/2024,KP.3.3 Australia/SA1439631/2024,KP.3.3 Australia/SA1450904/2024,KP.3.3 Australia/SA1439637/2024,KP.3.3 -Japan/FR302-0052/2024,KP.3.3 -Japan/FR014-0068/2024,KP.3.3 -Japan/FR088-0022/2024,KP.3.3 -Japan/SUPCRC-6331/2024,KP.3.3 -Japan/FR047-0004/2024,KP.3.3 -Japan/FR004-0053/2024,KP.3.3 -Japan/TKYnat16916/2024,KP.3.3 -Japan/TKYnat16782/2024,KP.3.3 -Japan/FR050-0074/2024,KP.3.3 -USA/HI-H2328530/2024,KP.3.3 -USA/HI-H2328537/2024,KP.3.3 -Japan/FR062-0105/2024,KP.3.3 -Japan/FR035-0032/2024,KP.3.3 -Japan/FR079-0040/2024,KP.3.3 -Japan/FR001-0024/2024,KP.3.3 -Japan/FR014-0104/2024,KP.3.3 -Japan/FR302-0487/2024,KP.3.3 -Japan/FR302-0462/2024,KP.3.3 -Japan/FR021-0321/2024,KP.3.3 -Japan/FR041-0032/2024,KP.3.3 -Japan/FR014-0078/2024,KP.3.3 -Japan/FR079-0026/2024,KP.3.3 -Japan/FR079-0030/2024,KP.3.3 -Japan/FR012-0074/2024,KP.3.3 -Japan/FR021-0317/2024,KP.3.3 -Japan/FR021-0308/2024,KP.3.3 -Japan/SUPCRC-6338/2024,KP.3.3 -Japan/SUPCRC-6359/2024,KP.3.3 -Japan/SUPCRC-6355/2024,KP.3.3 Japan/PG-596515/2024,JN.15 Japan/FR301-0230/2024,JN.15 Japan/FR044-0003/2024,JN.15 @@ -2553058,27 +2553003,8 @@ USA/CA-CDC-LC1104743/2024,LB.1.3 PuertoRico/PR-PRPHL-MB1010/2024,LB.1.3 Canada/NB-CHUDGLD-23E-MM00041R/2024,LB.1.3 USA/NV-NSPHL-S000825/2024,LB.1.3 -USA/CO-CDPHE-41888043/2024,LB.1.3 -NewZealand/24ZA1977/2024,LB.1.3 -USA/NY-GBW-GKISBBBB35289/2024,LB.1.3 -USA/CA-GBW-GKPLAAAA13564/2024,LB.1.3 -USA/CA-GBW-GKISBBBB22718/2024,LB.1.3 -Canada/NL-NML-711424/2024,LB.1.3 -Canada/NL-NML-711425/2024,LB.1.3 -USA/VA-CDC-LC1103214/2024,LB.1.3 -USA/NY-PRL-240514_81E04/2024,LB.1.3 -USA/NY-CDC-LC1104045/2024,LB.1.3 -USA/NY-PRL-240521_81E02/2024,LB.1.3 -USA/NY-NYULH-19449/2024,LB.1.3 -USA/NY-PRL-240507_81C09/2024,LB.1.3 USA/NY-PBRI-CM001/2024,LB.1.3 USA/NY-PBRI-CM002/2024,LB.1.3 -USA/NY-NYULH-19429/2024,LB.1.3 -USA/NY-NYULH-19455/2024,LB.1.3 -USA/NY-PRL-240521_81D10/2024,LB.1.3 -USA/NY-PRL-240521_81G03/2024,LB.1.3 -USA/NY-PRL-240521_81C07/2024,LB.1.3 -USA/NY-PRL-240514_81A03/2024,LB.1.3 England/CLIMB-CM7YMZZB/2024,LB.1.4 USA/2432306/2024,LB.1.4 England/CLIMB-CM7YFTGU/2024,LB.1.4 @@ -2553109,8 +2553035,6 @@ USA/WA-GBW-GKPLAAAA18594/2024,LB.1.4 Singapore/R23MQ62/2024,LB.1.4 USA/NY-CDC-LC1104788/2024,LB.1.4 USA/NY-PRL-240514_81D06/2024,LB.1.4 -Singapore/R22MQ152/2024,LB.1.4 -Singapore/R21MQ97/2024,LB.1.4 England/CLIMB-CM7YG4TZ/2024,LB.1.4 England/CLIMB-CM7Y8Q9X/2024,LB.1.4 England/CLIMB-CM7YGFOO/2024,LB.1.4 @@ -2553394,9 +2553318,6 @@ England/CLIMB-CM7YJ3J8/2024,KP.3.1.4 England/CLIMB-CM7YF1KU/2024,KP.3.1.4 England/CLIMB-CM7YJPXS/2024,KP.3.1.4 England/CLIMB-CM7YE7G7/2024,KP.3.1.4 -England/CLIMB-CM7YEIOY/2024,KP.3.1.4 -Spain/GA-CHUAC-12264/2024,KP.3.1.4 -Portugal/PT50737/2024,KP.3.1.4 Japan/FR014-0145/2024,KP.3.1.4 USA/CA-CDPH-500136504/2024,KP.3.1.4 Spain/CT-HCB-4126/2024,KP.3.1.4 @@ -2554169,14 +2554090,6 @@ USA/NJ-CDC-LC1104074/2024,LB.1.7 USA/NJ-CDC-LC1104160/2024,LB.1.7 USA/NY-NYULH-19103/2024,LB.1.7 USA/NY-NYULH-19416/2024,LB.1.7 -USA/NY-PRL-240514_81F10/2024,LB.1.7 -Canada/NL-NML-709913/2024,LB.1.7 -Canada/NL-NML-709915/2024,LB.1.7 -Canada/NL-NML-709912/2024,LB.1.7 -USA/NY-NYULH-19324/2024,LB.1.7 -USA/NJ-CDC-LC1104200/2024,LB.1.7 -USA/NJ-CDC-LC1103808/2024,LB.1.7 -USA/PA-CDC-LC1103510/2024,LB.1.7 USA/NY-CDC-LC1103684/2024,LB.1.7 USA/NY-CDC-QDX96100934/2024,LB.1.7 USA/NY-NYULH-19339/2024,LB.1.7 @@ -2554186,14 +2554099,6 @@ USA/NY-NYULH-19357/2024,LB.1.7 USA/NY-NYULH-19111/2024,LB.1.7 USA/NY-NYULH-19418/2024,LB.1.7 USA/NY-NYULH-19326/2024,LB.1.7 -USA/NY-PRL-240507_81E11/2024,LB.1.7 -USA/NY-NYULH-19412/2024,LB.1.7 -USA/NY-NYULH-19533/2024,LB.1.7 -USA/NY-NYULH-19248/2024,LB.1.7 -USA/NY-NYULH-19545/2024,LB.1.7 -USA/NY-NYULH-19517/2024,LB.1.7 -USA/NY-NYULH-19514/2024,LB.1.7 -USA/NY-NYULH-19511/2024,LB.1.7 USA/NY-NYULH-19564/2024,LB.1.7 USA/NY-NYULH-19562/2024,LB.1.7 Canada/ON-PHL-202407175-v2/2024,LF.1.1.1 @@ -2559550,10 +2559455,6 @@ USA/NY-PRL-240529_81G01/2024,LY.1 USA/2024CV0843/2024,LY.1 USA/AZ-ASPHL-0843/2024,LY.1 Australia/VIC-VIDRL-00014141/2024,JN.1.18.7 -England/CLIMB-CM7YGJB6/2024,JN.1.18.7 -England/CLIMB-CM7YJYGE/2024,JN.1.18.7 -Wales/CLIMB-CM7YRHWF/2024,JN.1.18.7 -England/CLIMB-CM7YETRR/2024,JN.1.18.7 France/HDF-IPP06015/2024,JN.1.18.7 Canada/AB-ABPHL-118651/2024,JN.1.18.7 Hubei/HCDC-HS5305/2024,JN.1.18.7 @@ -2562136,3 +2562037,1731 @@ Singapore/R28MQ136/2024,KP.2.17 Singapore/R27MQ154/2024,KP.2.17 Singapore/R30MQ260/2024,KP.2.17 Singapore/R29MQ142/2024,KP.2.17 +NewZealand/24ZA2878/2024,LB.1.3.2 +NewZealand/24ZA1977/2024,LB.1.3.2 +USA/NY-GBW-GKISBBBB35289/2024,LB.1.3.2 +France/BFC-IPP06421/2024,LB.1.3.2 +France/BFC-RELAB-IPP06527/2024,LB.1.3.2 +USA/CA-GBW-GKPLAAAA13564/2024,LB.1.3.2 +USA/CA-GBW-GKISBBBB22718/2024,LB.1.3.2 +USA/CA-CDPH-500137642/2024,LB.1.3.2 +USA/NY-PRL-240611_81E10/2024,LB.1.3.2 +USA/VIEW-L3371675142243/2024,LB.1.3.2 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e96a1065..8d253be6 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -276,6 +276,12 @@ "ME": "B.1.1.529.2.86.1.1.50.2", "MF": "B.1.1.529.2.86.1.1.65.1", "MG": "B.1.1.529.2.86.1.1.11.1.1.1.1", + "MH": "B.1.1.529.2.86.1.1.9.2.1.3.2", + "MJ": "B.1.1.529.2.86.1.1.29.1", + "MK": "B.1.1.529.2.86.1.1.11.1.3.1.6", + "ML": "B.1.1.529.2.86.1.1.11.1.3.3.3", + "MM": "B.1.1.529.2.86.1.1.11.1.3.1.4", + "MN": "B.1.1.529.2.86.1.1.18.7", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"], diff --git a/scripts/issue-milestone-collector/README.md b/scripts/issue-milestone-collector/README.md index 51a4b2cb..b5dc3e11 100644 --- a/scripts/issue-milestone-collector/README.md +++ b/scripts/issue-milestone-collector/README.md @@ -1,5 +1,6 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO :--- | :--- | :---: | :---: | :--- | :-- +`` | `` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `A.2.5.1` | `A.2.5.1` | [⚑ 25](https://github.com/cov-lineages/pango-designation/milestone/25?closed=1) | [#33](https://github.com/cov-lineages/pango-designation/issues/33) | https://github.com/cov-lineages/pango-designation/labels/designated | main `A.2.5.3` | `A.2.5.3` | [⚑ 89](https://github.com/cov-lineages/pango-designation/milestone/89?closed=1) | [#168](https://github.com/cov-lineages/pango-designation/issues/168) | https://github.com/cov-lineages/pango-designation/labels/designated | main `A.27` | `A.27` | [⚑ 6](https://github.com/cov-lineages/pango-designation/milestone/6?closed=1) | [#11](https://github.com/cov-lineages/pango-designation/issues/11) | https://github.com/cov-lineages/pango-designation/labels/designated | main @@ -280,10 +281,10 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.1` | `B.1.1.529.2.86.1.1.1` | [⚑ 378](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/378?closed=1) | [#987](https://github.com/sars-cov-2-variants/lineage-proposals/issues/987) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [Orf6](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Orf6), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.1.1` | `B.1.1.529.2.86.1.1.1.1` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.1.2` | `B.1.1.529.2.86.1.1.1.2` | [⚑ 382](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/382?closed=1) | [#1147 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1147) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:181](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A181), [SLip](https://github.com/sars-cov-2-variants/lineage-proposals/labels/SLip) | 2nd -`JN.1.1.3` | `B.1.1.529.2.86.1.1.1.3` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.1.3` | `B.1.1.529.2.86.1.1.1.3` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.1.4` | `B.1.1.529.2.86.1.1.1.4` | [⚑ 843](https://github.com/cov-lineages/pango-designation/milestone/843?closed=1) | [#2476](https://github.com/cov-lineages/pango-designation/issues/2476) | | main `JN.1.1.4` | `B.1.1.529.2.86.1.1.1.4` | [⚑ 417](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/417?closed=1) | [#1259](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1259) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1264](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1264), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`JN.1.1.5` | `B.1.1.529.2.86.1.1.1.5` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.1.5` | `B.1.1.529.2.86.1.1.1.5` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KR.1` | `B.1.1.529.2.86.1.1.1.5 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KR.1.1` | `B.1.1.529.2.86.1.1.1.5 .1.1` | [⚑ 488](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/488?closed=1) | [#1545](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1545) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [ORF9b](https://github.com/sars-cov-2-variants/lineage-proposals/labels/ORF9b), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KR.2` | `B.1.1.529.2.86.1.1.1.5 .2` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd @@ -297,60 +298,71 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.11` | `B.1.1.529.2.86.1.1.11` | [⚑ 400](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/400?closed=1) | [#1262](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1262) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104) | 2nd `JN.1.11.1` | `B.1.1.529.2.86.1.1.11.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.1` | `B.1.1.529.2.86.1.1.11.1 .1` | [⚑ 419](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/419?closed=1) | [#1364](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1364) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:1086](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1086) | 2nd -`KP.1.1` | `B.1.1.529.2.86.1.1.11.1 .1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.1.1` | `B.1.1.529.2.86.1.1.11.1 .1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`MG.1` | `B.1.1.529.2.86.1.1.11.1 .1.1.1.1` | [⚑ 521](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/521?closed=1) | [#1623](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1623) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [s:182](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A182), [S:679](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A679), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.1.1.2` | `B.1.1.529.2.86.1.1.11.1 .1.1.2` | [⚑ 473](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/473?closed=1) | [#1541](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1541) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [S:1162](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1162), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:1086](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1086), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LP.1` | `B.1.1.529.2.86.1.1.11.1 .1.1.3.1` | [⚑ 495](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/495?closed=1) | [#1591](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1591) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt) | 2nd -`LP.1.1` | `B.1.1.529.2.86.1.1.11.1 .1.1.3.1.1` | [⚑ 513](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/513?closed=1) | [#1633](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1633) | [S.1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%2E1229), [S:255](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A255), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt) | 2nd +`LP.1` | `B.1.1.529.2.86.1.1.11.1 .1.1.3.1` | [⚑ 495](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/495?closed=1) | [#1591](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1591) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd +`LP.1.1` | `B.1.1.529.2.86.1.1.11.1 .1.1.3.1.1` | [⚑ 513](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/513?closed=1) | [#1633](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1633) | [S.1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%2E1229), [S:255](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A255), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd `KP.1.1.4` | `B.1.1.529.2.86.1.1.11.1 .1.1.4` | [⚑ 494](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/494?closed=1) | [#1593](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1593) | [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:214](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A214), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:1086](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1086), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.1.2` | `B.1.1.529.2.86.1.1.11.1 .1.2` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`KP.2` | `B.1.1.529.2.86.1.1.11.1 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.2` | `B.1.1.529.2.86.1.1.11.1 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.2.1` | `B.1.1.529.2.86.1.1.11.1 .2.1` | [⚑ 439](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/439?closed=1) | [#1440](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1440) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [s:1201](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1201), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.2.10` | `B.1.1.529.2.86.1.1.11.1 .2.10` | [⚑ 469](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/469?closed=1) | [#1553](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1553) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd `KP.2.11` | `B.1.1.529.2.86.1.1.11.1 .2.11` | [⚑ 470](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/470?closed=1) | [#1520](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1520) | [Small clusters ??](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Small%20clusters%20%3F%3F), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [S:56](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A56) | 2nd `KP.2.12` | `B.1.1.529.2.86.1.1.11.1 .2.12` | [⚑ 472](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/472?closed=1) | [#1550](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1550) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1176](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1176), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd `KP.2.14` | `B.1.1.529.2.86.1.1.11.1 .2.14` | [⚑ 481](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/481?closed=1) | [#1578](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1578) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [S:184](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A184), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [S:22](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A22), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd `KP.2.2` | `B.1.1.529.2.86.1.1.11.1 .2.2` | [⚑ 438](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/438?closed=1) | [#1446](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1446) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [s:1266](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1266) | 2nd -`KP.2.3` | `B.1.1.529.2.86.1.1.11.1 .2.3` | [⚑ 455](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/455?closed=1) | [#1459](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1459) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [N Glycan](https://github.com/sars-cov-2-variants/lineage-proposals/labels/N%20Glycan), [S:146](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A146), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt) | 2nd +`KP.2.3` | `B.1.1.529.2.86.1.1.11.1 .2.3` | [⚑ 455](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/455?closed=1) | [#1459](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1459) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [N Glycan](https://github.com/sars-cov-2-variants/lineage-proposals/labels/N%20Glycan), [S:146](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A146), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd `KP.2.3.1` | `B.1.1.529.2.86.1.1.11.1 .2.3.1` | [⚑ 471](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/471?closed=1) | [#1548](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1548) | | 2nd -`KP.2.3.3` | `B.1.1.529.2.86.1.1.11.1 .2.3.3` | [⚑ 516](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/516?closed=1) | [#1618](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1618) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [orf8](https://github.com/sars-cov-2-variants/lineage-proposals/labels/orf8), [S:146](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A146), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt) | 2nd -`KP.2.3.4` | `B.1.1.529.2.86.1.1.11.1 .2.3.4` | [⚑ 510](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/510?closed=1) | [#1596](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1596) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:146](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A146), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt) | 2nd +`KP.2.3.3` | `B.1.1.529.2.86.1.1.11.1 .2.3.3` | [⚑ 516](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/516?closed=1) | [#1618](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1618) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [orf8](https://github.com/sars-cov-2-variants/lineage-proposals/labels/orf8), [S:146](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A146), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd +`KP.2.3.4` | `B.1.1.529.2.86.1.1.11.1 .2.3.4` | [⚑ 510](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/510?closed=1) | [#1596](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1596) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:146](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A146), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd `KP.2.4` | `B.1.1.529.2.86.1.1.11.1 .2.4` | [⚑ 466](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/466?closed=1) | [#1524](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1524) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:250](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A250), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd `KP.2.5` | `B.1.1.529.2.86.1.1.11.1 .2.5` | [⚑ 467](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/467?closed=1) | [#1527](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1527) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd `KP.2.8` | `B.1.1.529.2.86.1.1.11.1 .2.8` | [⚑ 468](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/468?closed=1) | [#1546](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1546) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:60](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A60), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2) | 2nd -`KP.2.9` | `B.1.1.529.2.86.1.1.11.1 .2.9` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.2.9` | `B.1.1.529.2.86.1.1.11.1 .2.9` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.3` | `B.1.1.529.2.86.1.1.11.1 .3` | [⚑ 434](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/434?closed=1) | [#1410](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1410) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:493](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A493), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104) | 2nd `KP.3.1.1` | `B.1.1.529.2.86.1.1.11.1 .3.1.1` | [⚑ 480](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/480?closed=1) | [#1563](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1563) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd `MC.1` | `B.1.1.529.2.86.1.1.11.1 .3.1.1.1` | [⚑ 507](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/507?closed=1) | [#1638](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1638) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd `KP.3.1.2` | `B.1.1.529.2.86.1.1.11.1 .3.1.2` | [⚑ 491](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/491?closed=1) | [#1589](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1589) | [S:151](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A151), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd -`KP.3.1.3` | `B.1.1.529.2.86.1.1.11.1 .3.1.3` | [⚑ 493](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/493?closed=1) | [#1576 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1576) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.3.1.3` | `B.1.1.529.2.86.1.1.11.1 .3.1.3` | [⚑ 493](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/493?closed=1) | [#1576 🔵](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1576) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd `KP.3.1.4` | `B.1.1.529.2.86.1.1.11.1 .3.1.4` | [⚑ 492](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/492?closed=1) | [#1562](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1562) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Mutations outside spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Mutations%20outside%20spike), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`MM.1` | `B.1.1.529.2.86.1.1.11.1 .3.1.4.1` | [⚑ 527](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/527?closed=1) | [#1624](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1624) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`MM.2` | `B.1.1.529.2.86.1.1.11.1 .3.1.4.2` | [⚑ 526](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/526?closed=1) | [#1716](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1716) | [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [S:35](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A35), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd `KP.3.1.5` | `B.1.1.529.2.86.1.1.11.1 .3.1.5` | [⚑ 506](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/506?closed=1) | [#1614](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1614) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:556](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A556), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`MK.1` | `B.1.1.529.2.86.1.1.11.1 .3.1.6.1` | [⚑ 523](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/523?closed=1) | [#1605](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1605) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`MK.2` | `B.1.1.529.2.86.1.1.11.1 .3.1.6.2` | [⚑ 524](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/524?closed=1) | [#1606](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1606) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [Mutations outside spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Mutations%20outside%20spike), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [S:745](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A745) | 2nd `KP.3.2.1` | `B.1.1.529.2.86.1.1.11.1 .3.2.1` | [⚑ 487](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/487?closed=1) | [#1556](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1556) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [S:263](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A263) | 2nd `KP.3.2.5` | `B.1.1.529.2.86.1.1.11.1 .3.2.5` | [⚑ 499](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/499?closed=1) | [#1604](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1604) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated) | 2nd `KP.3.3` | `B.1.1.529.2.86.1.1.11.1 .3.3` | [⚑ 475](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/475?closed=1) | [#1531](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1531) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [ORF9b](https://github.com/sars-cov-2-variants/lineage-proposals/labels/ORF9b), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd `KP.3.3.1` | `B.1.1.529.2.86.1.1.11.1 .3.3.1` | [⚑ 508](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/508?closed=1) | [#1651](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1651) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [S:547](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A547) | 2nd -`KP.4.1` | `B.1.1.529.2.86.1.1.11.1 .4.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.3.3.2` | `B.1.1.529.2.86.1.1.11.1 .3.3.2` | [⚑ 522](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/522?closed=1) | [#1673](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1673) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [ORF9b](https://github.com/sars-cov-2-variants/lineage-proposals/labels/ORF9b), [S:435](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A435), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`ML.1` | `B.1.1.529.2.86.1.1.11.1 .3.3.3.1` | [⚑ 525](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/525?closed=1) | [#1683](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1683) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:681](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A681), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.3.4.1` | `B.1.1.529.2.86.1.1.11.1 .3.4.1` | [⚑ 493](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/493?closed=1) | [#1576 🔵](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1576) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.3.5` | `B.1.1.529.2.86.1.1.11.1 .3.5` | [⚑ 529](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/529?closed=1) | [#1630](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1630) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [s:213](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A213), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.4.1` | `B.1.1.529.2.86.1.1.11.1 .4.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.4.1.2` | `B.1.1.529.2.86.1.1.11.1 .4.1.2` | [⚑ 505](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/505?closed=1) | [#1611](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1611) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [S:441](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A441) | 2nd -`KP.4.2` | `B.1.1.529.2.86.1.1.11.1 .4.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.4.2` | `B.1.1.529.2.86.1.1.11.1 .4.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.5` | `B.1.1.529.2.86.1.1.11.1 .5` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.12` | `B.1.1.529.2.86.1.1.12` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.13` | `B.1.1.529.2.86.1.1.13` | [⚑ 844](https://github.com/cov-lineages/pango-designation/milestone/844?closed=1) | [#2464](https://github.com/cov-lineages/pango-designation/issues/2464) | | main `KS.1` | `B.1.1.529.2.86.1.1.13.1 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KS.1.1` | `B.1.1.529.2.86.1.1.13.1 .1.1` | [⚑ 482](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/482?closed=1) | [#1565](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1565) | [N Glycan](https://github.com/sars-cov-2-variants/lineage-proposals/labels/N%20Glycan), [S:22](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A22), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59), [S:1087](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1087), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KS.1.3` | `B.1.1.529.2.86.1.1.13.1 .1.3` | [⚑ 520](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/520?closed=1) | [#1535](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1535) | [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [Small clusters ??](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Small%20clusters%20%3F%3F), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [S:642](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A642) | 2nd `JN.1.15.1` | `B.1.1.529.2.86.1.1.15.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LU.1` | `B.1.1.529.2.86.1.1.15.1 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LU.1` | `B.1.1.529.2.86.1.1.15.1 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LU.2` | `B.1.1.529.2.86.1.1.15.1 .2` | [⚑ 515](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/515?closed=1) | [#1652](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1652) | [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.16` | `B.1.1.529.2.86.1.1.16` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.16.1` | `B.1.1.529.2.86.1.1.16.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.16.1` | `B.1.1.529.2.86.1.1.16.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LF.1.1` | `B.1.1.529.2.86.1.1.16.1 .1.1` | [⚑ 474](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/474?closed=1) | [#1448](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1448) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1263](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1263), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LF.1.1.1` | `B.1.1.529.2.86.1.1.16.1 .1.1.1` | [⚑ 474](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/474?closed=1) | [#1448](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1448) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1263](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1263), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LF.3.1` | `B.1.1.529.2.86.1.1.16.1 .3.1` | [⚑ 490](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/490?closed=1) | [#1558](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1558) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [s:1143](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1143), [S:745](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A745) | 2nd `LF.3.1.1` | `B.1.1.529.2.86.1.1.16.1 .3.1.1` | [⚑ 490](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/490?closed=1) | [#1558](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1558) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [s:1143](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1143), [S:745](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A745) | 2nd -`LF.4.1` | `B.1.1.529.2.86.1.1.16.1 .4.1` | [⚑ 514](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/514?closed=1) | [#1590](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1590) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [Truncated Orf(3-10)](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Truncated%20Orf(3-10)), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [orf8](https://github.com/sars-cov-2-variants/lineage-proposals/labels/orf8), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt) | 2nd +`LF.4.1` | `B.1.1.529.2.86.1.1.16.1 .4.1` | [⚑ 514](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/514?closed=1) | [#1590](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1590) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [Truncated Orf(3-10)](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Truncated%20Orf(3-10)), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [orf8](https://github.com/sars-cov-2-variants/lineage-proposals/labels/orf8), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd +`LF.5` | `B.1.1.529.2.86.1.1.16.1 .5` | [⚑ 519](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/519?closed=1) | [#1627](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1627) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [S:33](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A33) | 2nd `JN.1.16.2` | `B.1.1.529.2.86.1.1.16.2` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LA.1` | `B.1.1.529.2.86.1.1.16.2 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LA.2` | `B.1.1.529.2.86.1.1.16.2 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.18` | `B.1.1.529.2.86.1.1.18` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LA.2` | `B.1.1.529.2.86.1.1.16.2 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.18` | `B.1.1.529.2.86.1.1.18` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.18.1` | `B.1.1.529.2.86.1.1.18.1` | [⚑ 431](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/431?closed=1) | [#1414](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1414) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:250](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A250) | 2nd `LQ.1` | `B.1.1.529.2.86.1.1.18.1 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LQ.1.1` | `B.1.1.529.2.86.1.1.18.1 .1.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd @@ -359,15 +371,15 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.18.3` | `B.1.1.529.2.86.1.1.18.3` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `MA.1` | `B.1.1.529.2.86.1.1.18.3 .1` | [⚑ 511](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/511?closed=1) | [#1635](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1635) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [N Glycan](https://github.com/sars-cov-2-variants/lineage-proposals/labels/N%20Glycan), [DeFViRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFViRT) | 2nd `JN.1.18.4` | `B.1.1.529.2.86.1.1.18.4` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.18.5` | `B.1.1.529.2.86.1.1.18.5` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.18.5` | `B.1.1.529.2.86.1.1.18.5` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.2` | `B.1.1.529.2.86.1.1.2` | [⚑ 267](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/267?closed=1) | [#1087](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1087) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.2.1` | `B.1.1.529.2.86.1.1.2.1` | [⚑ 409](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/409?closed=1) | [#1322](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1322) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1101](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1101) | 2nd `JN.1.21` | `B.1.1.529.2.86.1.1.21` | [⚑ 415](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/415?closed=1) | [#1162](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1162) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1058](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1058) | 2nd `JN.1.23` | `B.1.1.529.2.86.1.1.23` | [⚑ 845](https://github.com/cov-lineages/pango-designation/milestone/845?closed=1) | [#2488](https://github.com/cov-lineages/pango-designation/issues/2488) | | main `JN.1.23.1` | `B.1.1.529.2.86.1.1.23.1` | [⚑ 486](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/486?closed=1) | [#1552](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1552) | [S:1264](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1264), [NSP3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP3), [JN.1.23](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%2E23), [S:137](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A137) | 2nd -`JN.1.24.1` | `B.1.1.529.2.86.1.1.24.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LM.1` | `B.1.1.529.2.86.1.1.25.1 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.26` | `B.1.1.529.2.86.1.1.26` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.24.1` | `B.1.1.529.2.86.1.1.24.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LM.1` | `B.1.1.529.2.86.1.1.25.1 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.26` | `B.1.1.529.2.86.1.1.26` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.27` | `B.1.1.529.2.86.1.1.27` | [⚑ 429](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/429?closed=1) | [#1403](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1403) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:153](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A153), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.28.1` | `B.1.1.529.2.86.1.1.28.1` | [⚑ 447](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/447?closed=1) | [#1244](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1244) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [combo](https://github.com/sars-cov-2-variants/lineage-proposals/labels/combo), [PLPro](https://github.com/sars-cov-2-variants/lineage-proposals/labels/PLPro), [S:t572I](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3At572I) | 2nd `KW.1` | `B.1.1.529.2.86.1.1.28.1 .1` | [⚑ 447](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/447?closed=1) | [#1244](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1244) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [combo](https://github.com/sars-cov-2-variants/lineage-proposals/labels/combo), [PLPro](https://github.com/sars-cov-2-variants/lineage-proposals/labels/PLPro), [S:t572I](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3At572I) | 2nd @@ -375,14 +387,14 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `KW.1.1.1` | `B.1.1.529.2.86.1.1.28.1 .1.1.1` | [⚑ 476](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/476?closed=1) | [#1504](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1504) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:95](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A95), [Convergent Trio 346/456/572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Convergent%20Trio%20346%2F456%2F572), [FLIRT combo](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLIRT%20combo) | 2nd `LG.1` | `B.1.1.529.2.86.1.1.28.1 .1.1.1.1` | [⚑ 476](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/476?closed=1) | [#1504](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1504) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:95](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A95), [Convergent Trio 346/456/572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Convergent%20Trio%20346%2F456%2F572), [FLIRT combo](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLIRT%20combo) | 2nd `JN.1.29.1` | `B.1.1.529.2.86.1.1.29.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.30.1` | `B.1.1.529.2.86.1.1.30.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`KU.2` | `B.1.1.529.2.86.1.1.30.1 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.30.1` | `B.1.1.529.2.86.1.1.30.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KU.2` | `B.1.1.529.2.86.1.1.30.1 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.31` | `B.1.1.529.2.86.1.1.31` | [⚑ 432](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/432?closed=1) | [#1319](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1319) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Branch](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Branch), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.32.1` | `B.1.1.529.2.86.1.1.32.1` | [⚑ 456](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/456?closed=1) | [#1442](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1442) | [S:183](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A183), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572) | 2nd `JN.1.35` | `B.1.1.529.2.86.1.1.35` | [⚑ 437](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/437?closed=1) | [#1362](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1362) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [FCS](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FCS), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd `JN.1.36` | `B.1.1.529.2.86.1.1.36` | [⚑ 443](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/443?closed=1) | [#1326](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1326) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [s:677](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A677), [FCS](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FCS), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd `JN.1.36.1` | `B.1.1.529.2.86.1.1.36.1` | [⚑ 443](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/443?closed=1) | [#1326](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1326) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [s:677](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A677), [FCS](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FCS), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd -`JN.1.39.1` | `B.1.1.529.2.86.1.1.39.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.39.1` | `B.1.1.529.2.86.1.1.39.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.39.3` | `B.1.1.529.2.86.1.1.39.3` | [⚑ 435](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/435?closed=1) | [#1395](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1395) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:67](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A67) | 2nd `JN.1.4` | `B.1.1.529.2.86.1.1.4` | [⚑ 378](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/378?closed=1) | [#987](https://github.com/sars-cov-2-variants/lineage-proposals/issues/987) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [Orf6](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Orf6), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.4.1` | `B.1.1.529.2.86.1.1.4.1` | [⚑ 408](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/408?closed=1) | [#1175](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1175) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:654](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A654), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd @@ -390,12 +402,12 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.4.2` | `B.1.1.529.2.86.1.1.4.2` | [⚑ 413](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/413?closed=1) | [#1180](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1180) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:185](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A185), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `LL.1` | `B.1.1.529.2.86.1.1.4.2 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.4.3` | `B.1.1.529.2.86.1.1.4.3` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`JN.1.4.4` | `B.1.1.529.2.86.1.1.4.4` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.4.4` | `B.1.1.529.2.86.1.1.4.4` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.4.5` | `B.1.1.529.2.86.1.1.4.5` | [⚑ 430](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/430?closed=1) | [#1171 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1171) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `KV.2` | `B.1.1.529.2.86.1.1.4.5 .2` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.4.6` | `B.1.1.529.2.86.1.1.4.6` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`LE.1` | `B.1.1.529.2.86.1.1.4.7 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LE.1.1` | `B.1.1.529.2.86.1.1.4.7 .1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LE.1` | `B.1.1.529.2.86.1.1.4.7 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LE.1.1` | `B.1.1.529.2.86.1.1.4.7 .1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LE.1.3.1` | `B.1.1.529.2.86.1.1.4.7 .1.3.1` | [⚑ 503](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/503?closed=1) | [#1612](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1612) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:84](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A84), [S:173](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A173), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.4.8` | `B.1.1.529.2.86.1.1.4.8` | [⚑ 496](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/496?closed=1) | [#1495](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1495) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:60](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A60) | 2nd `JN.1.40` | `B.1.1.529.2.86.1.1.40` | [⚑ 442](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/442?closed=1) | [#1451](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1451) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [S:58](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A58) | 2nd @@ -405,7 +417,8 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.47.1` | `B.1.1.529.2.86.1.1.47.1` | [⚑ 457](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/457?closed=1) | [#1318 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1318) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:221](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A221) | 2nd `JN.1.47.2` | `B.1.1.529.2.86.1.1.47.2` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.48.1` | `B.1.1.529.2.86.1.1.48.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.48.2` | `B.1.1.529.2.86.1.1.48.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.48.2` | `B.1.1.529.2.86.1.1.48.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.48.3` | `B.1.1.529.2.86.1.1.48.3` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `MB.1.1` | `B.1.1.529.2.86.1.1.49.1 .1.1` | [⚑ 512](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/512?closed=1) | [#1659](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1659) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [s:182](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A182), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [S:22](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A22), [FViRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FViRT) | 2nd `JN.1.5` | `B.1.1.529.2.86.1.1.5` | [⚑ 829](https://github.com/cov-lineages/pango-designation/milestone/829?closed=1) | [#2419](https://github.com/cov-lineages/pango-designation/issues/2419) | | main `JN.1.5` | `B.1.1.529.2.86.1.1.5` | [⚑ 381](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/381?closed=1) | [#1143](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1143) | [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [NSP13](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP13) | 2nd @@ -413,8 +426,11 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.55.1` | `B.1.1.529.2.86.1.1.55.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.55.2` | `B.1.1.529.2.86.1.1.55.2` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.57.1` | `B.1.1.529.2.86.1.1.57.1` | [⚑ 497](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/497?closed=1) | [#1460](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1460) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:60](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A60) | 2nd -`JN.1.6.1` | `B.1.1.529.2.86.1.1.6.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.6.1` | `B.1.1.529.2.86.1.1.6.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.62` | `B.1.1.529.2.86.1.1.62` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.63` | `B.1.1.529.2.86.1.1.63` | [⚑ 532](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/532?closed=1) | [#1513 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1513) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:153](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A153), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd +`JN.1.63.1` | `B.1.1.529.2.86.1.1.63.1` | [⚑ 532](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/532?closed=1) | [#1513 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1513) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:153](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A153), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd +`JN.1.65` | `B.1.1.529.2.86.1.1.65` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.7` | `B.1.1.529.2.86.1.1.7` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.7.1` | `B.1.1.529.2.86.1.1.7.1` | [⚑ 420](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/420?closed=1) | [#1371](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1371) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.7.3` | `B.1.1.529.2.86.1.1.7.3` | [⚑ 452](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/452?closed=1) | [#1343 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1343) | [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd @@ -422,15 +438,18 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.7.5` | `B.1.1.529.2.86.1.1.7.5` | [⚑ 483](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/483?closed=1) | [#1374](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1374) | [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [Lineage defining mutation further mutated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Lineage%20defining%20mutation%20further%20mutated), [NSP5](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP5) | 2nd `LK.1` | `B.1.1.529.2.86.1.1.7.5 .1` | [⚑ 483](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/483?closed=1) | [#1374](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1374) | [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [Lineage defining mutation further mutated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Lineage%20defining%20mutation%20further%20mutated), [NSP5](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP5) | 2nd `LK.2.1` | `B.1.1.529.2.86.1.1.7.5 .2.1` | [⚑ 517](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/517?closed=1) | [#1679](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1679) | [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [2nuc mutation](https://github.com/sars-cov-2-variants/lineage-proposals/labels/2nuc%20mutation), [S:1150](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1150), [S:547](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A547) | 2nd +`JN.1.7.9` | `B.1.1.529.2.86.1.1.7.9` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.8.1` | `B.1.1.529.2.86.1.1.8.1` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`JN.1.8.2` | `B.1.1.529.2.86.1.1.8.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.8.2` | `B.1.1.529.2.86.1.1.8.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.9` | `B.1.1.529.2.86.1.1.9` | [⚑ 833](https://github.com/cov-lineages/pango-designation/milestone/833?closed=1) | [#2410](https://github.com/cov-lineages/pango-designation/issues/2410) | | main `JN.1.9` | `B.1.1.529.2.86.1.1.9` | [⚑ 387](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/387?closed=1) | [#1096](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1096) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:183](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A183), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.9.1` | `B.1.1.529.2.86.1.1.9.1` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd -`LB.1` | `B.1.1.529.2.86.1.1.9.2 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LB.1.2.1` | `B.1.1.529.2.86.1.1.9.2 .1.2.1` | [⚑ 498](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/498?closed=1) | [#1559](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1559) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd -`LB.1.3.1` | `B.1.1.529.2.86.1.1.9.2 .1.3.1` | [⚑ 509](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/509?closed=1) | [#1620](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1620) | [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd -`LB.1.5` | `B.1.1.529.2.86.1.1.9.2 .1.5` | [⚑ 489](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/489?closed=1) | [#1557](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1557) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [2nuc mutation](https://github.com/sars-cov-2-variants/lineage-proposals/labels/2nuc%20mutation), [s:1143](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1143), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`LB.1` | `B.1.1.529.2.86.1.1.9.2 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LB.1.2.1` | `B.1.1.529.2.86.1.1.9.2 .1.2.1` | [⚑ 498](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/498?closed=1) | [#1559](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1559) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`LB.1.3.1` | `B.1.1.529.2.86.1.1.9.2 .1.3.1` | [⚑ 509](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/509?closed=1) | [#1620](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1620) | [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`LB.1.5` | `B.1.1.529.2.86.1.1.9.2 .1.5` | [⚑ 489](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/489?closed=1) | [#1557](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1557) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [2nuc mutation](https://github.com/sars-cov-2-variants/lineage-proposals/labels/2nuc%20mutation), [s:1143](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1143), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`LB.1.7.1` | `B.1.1.529.2.86.1.1.9.2 .1.7.1` | [⚑ 530](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/530?closed=1) | [#1641](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1641) | [Rapid review needed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Rapid%20review%20needed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:183](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A183), [S:148](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A148), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT) | 2nd +`LB.1.7.3` | `B.1.1.529.2.86.1.1.9.2 .1.7.3` | [⚑ 531](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/531?closed=1) | [#1555 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1555) | [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [NSP3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP3), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1), [S:34](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A34) | 2nd `JN.10` | `B.1.1.529.2.86.1.10` | [⚑ 234](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/234?closed=1) | [#954](https://github.com/sars-cov-2-variants/lineage-proposals/issues/954) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [S:475](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A475), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86) | 2nd `JN.11` | `B.1.1.529.2.86.1.11` | [⚑ 404](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/404?closed=1) | [#1303](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1303) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd `JN.11.1` | `B.1.1.529.2.86.1.11.1` | [⚑ 404](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/404?closed=1) | [#1303](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1303) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd @@ -455,7 +474,7 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JQ.1` | `B.1.1.529.2.86.3.1` | [⚑ 144](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/144?closed=1) | [#906](https://github.com/sars-cov-2-variants/lineage-proposals/issues/906) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:95](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A95) | 2nd `JQ.2` | `B.1.1.529.2.86.3.2` | [⚑ 426](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/426?closed=1) | [#1373](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1373) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd `JQ.2.1` | `B.1.1.529.2.86.3.2.1` | [⚑ 426](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/426?closed=1) | [#1373](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1373) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd -`JQ.2.1.1` | `B.1.1.529.2.86.3.2.1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JQ.2.1.1` | `B.1.1.529.2.86.3.2.1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `BA.2.86.4` | `B.1.1.529.2.86.4` | [⚑ 233](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/233?closed=1) | [#1032](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1032) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:222](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A222) | 2nd `BA.2.9` | `B.1.1.529.2.9` | [⚑ 236](https://github.com/cov-lineages/pango-designation/milestone/236?closed=1) | [#432](https://github.com/cov-lineages/pango-designation/issues/432) | https://github.com/cov-lineages/pango-designation/labels/designated | main `BA.2.9.1` | `B.1.1.529.2.9.1` | [⚑ 250](https://github.com/cov-lineages/pango-designation/milestone/250?closed=1) | [#530](https://github.com/cov-lineages/pango-designation/issues/530) | https://github.com/cov-lineages/pango-designation/labels/designated | main @@ -1503,7 +1522,7 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `XDT` | `XDT` | [⚑ 416](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/416?closed=1) | [#1183](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1183) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:174](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A174), [XDT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDT) | 2nd `XDU` | `XDU` | [⚑ 448](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/448?closed=1) | [#1084](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1084) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [XDU](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDU) | 2nd `XDW` | `XDW` | [⚑ 458](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/458?closed=1) | [#1471](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1471) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [recombinant squared](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant%20squared), [S:701](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A701), [XDW](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDW) | 2nd -`XDY` | `XDY` | [⚑ 498](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/498?closed=1) | [#1559](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1559) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`XDY` | `XDY` | [⚑ 498](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/498?closed=1) | [#1559](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1559) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFLiRT), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd `XDZ` | `XDZ` | [⚑ 504](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/504?closed=1) | [#1356 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1356) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [Small clusters ??](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Small%20clusters%20%3F%3F), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike), [XDZ](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDZ) | 2nd `XE` | `XE` | [⚑ 220](https://github.com/cov-lineages/pango-designation/milestone/220?closed=1) | [#454](https://github.com/cov-lineages/pango-designation/issues/454) | https://github.com/cov-lineages/pango-designation/labels/designated | main `XEB` | `XEB` | [⚑ 501](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/501?closed=1) | [#1290](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1290) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [recombinant squared](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant%20squared), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd diff --git a/scripts/issue-milestone-collector/data/mappings.json b/scripts/issue-milestone-collector/data/mappings.json index 31f06fe6..864c8447 100644 --- a/scripts/issue-milestone-collector/data/mappings.json +++ b/scripts/issue-milestone-collector/data/mappings.json @@ -1,4 +1,16 @@ { + "": [ + { + "pango": "", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null, + "unaliased": "" + } + ], "A.2.5.1": [ { "pango": "A.2.5.1", @@ -3351,7 +3363,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.1.3" @@ -3385,7 +3397,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.1.5" @@ -3551,12 +3563,24 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1" } ], + "B.1.1.529.2.86.1.1.11.1.1.1.1.1": [ + { + "pango": "MG.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 521, + "issue": 1623, + "labels": "designated, s:182, S:679, S:572, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.1.1" + } + ], "B.1.1.529.2.86.1.1.11.1.1.1.2": [ { "pango": "KP.1.1.2", @@ -3575,7 +3599,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 495, "issue": 1591, - "labels": "designated, S:1229, DeFlirt", + "labels": "designated, S:1229, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.3.1" @@ -3587,7 +3611,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 513, "issue": 1633, - "labels": "S.1229, S:255, DeFlirt", + "labels": "S.1229, S:255, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.3.1.1" @@ -3623,7 +3647,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.2" @@ -3707,7 +3731,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 455, "issue": 1459, - "labels": "To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFlirt", + "labels": "To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.2.3" @@ -3731,7 +3755,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 516, "issue": 1618, - "labels": "To be proposed, Deletions/Truncations/Frameshifted, S:185, orf8, S:146, KP.2, DeFlirt", + "labels": "To be proposed, Deletions/Truncations/Frameshifted, S:185, orf8, S:146, KP.2, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.2.3.3" @@ -3743,7 +3767,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 510, "issue": 1596, - "labels": "Rapid review needed, designated, S:445, S:1104, S:146, KP.2, DeFlirt", + "labels": "Rapid review needed, designated, S:445, S:1104, S:146, KP.2, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.2.3.4" @@ -3791,7 +3815,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.2.9" @@ -3851,9 +3875,9 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 493, "issue": 1576, - "labels": "Multiple lineages, designated, S:31, KP.3", + "labels": "Rapid review needed, Multiple lineages, designated, S:31, KP.3", "state": "OPEN", - "reason": null, + "reason": "REOPENED", "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.3" } ], @@ -3869,6 +3893,30 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.4" } ], + "B.1.1.529.2.86.1.1.11.1.3.1.4.1": [ + { + "pango": "MM.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 527, + "issue": 1624, + "labels": "designated, S:680, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.4.1" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.4.2": [ + { + "pango": "MM.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 526, + "issue": 1716, + "labels": "S:185, S:35, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.4.2" + } + ], "B.1.1.529.2.86.1.1.11.1.3.1.5": [ { "pango": "KP.3.1.5", @@ -3881,6 +3929,30 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.5" } ], + "B.1.1.529.2.86.1.1.11.1.3.1.6.1": [ + { + "pango": "MK.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 523, + "issue": 1605, + "labels": "To be proposed, S:31, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.6.1" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.6.2": [ + { + "pango": "MK.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 524, + "issue": 1606, + "labels": "To be proposed, Emerged in an undersampled area, Mutations outside spike, designated, KP.3, S:745", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.6.2" + } + ], "B.1.1.529.2.86.1.1.11.1.3.2.1": [ { "pango": "KP.3.2.1", @@ -3929,13 +4001,61 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.3.3.1" } ], + "B.1.1.529.2.86.1.1.11.1.3.3.2": [ + { + "pango": "KP.3.3.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 522, + "issue": 1673, + "labels": "Apparently slow, designated, ORF9b, S:435, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.3.2" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.3.3.1": [ + { + "pango": "ML.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 525, + "issue": 1683, + "labels": "To be proposed, High local prevalence, designated, S:681, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.3.3.1" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.4.1": [ + { + "pango": "KP.3.4.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 493, + "issue": 1576, + "labels": "Rapid review needed, Multiple lineages, designated, S:31, KP.3", + "state": "OPEN", + "reason": "REOPENED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.4.1" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.5": [ + { + "pango": "KP.3.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 529, + "issue": 1630, + "labels": "designated, s:213, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.5" + } + ], "B.1.1.529.2.86.1.1.11.1.4.1": [ { "pango": "KP.4.1", "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.4.1" @@ -3959,7 +4079,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.11.1.4.2" @@ -4025,6 +4145,18 @@ "unaliased": "B.1.1.529.2.86.1.1.13.1.1.1" } ], + "B.1.1.529.2.86.1.1.13.1.1.3": [ + { + "pango": "KS.1.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 520, + "issue": 1535, + "labels": "High local prevalence, Small clusters ??, designated, FLiRT, S:642", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.13.1.1.3" + } + ], "B.1.1.529.2.86.1.1.15.1": [ { "pango": "JN.1.15.1", @@ -4043,7 +4175,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.15.1.1" @@ -4079,7 +4211,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.16.1" @@ -4139,12 +4271,24 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 514, "issue": 1590, - "labels": "To be proposed, Rapid review needed, Truncated Orf(3-10), designated, orf8, DeFlirt", + "labels": "To be proposed, Rapid review needed, Truncated Orf(3-10), designated, orf8, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.16.1.4.1" } ], + "B.1.1.529.2.86.1.1.16.1.5": [ + { + "pango": "LF.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 519, + "issue": 1627, + "labels": "designated, S:185, FLiRT, S:33", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.16.1.5" + } + ], "B.1.1.529.2.86.1.1.16.2": [ { "pango": "JN.1.16.2", @@ -4175,7 +4319,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.16.2.2" @@ -4187,7 +4331,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.18" @@ -4295,7 +4439,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.18.5" @@ -4367,7 +4511,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.24.1" @@ -4379,7 +4523,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.25.1.1" @@ -4391,7 +4535,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.26" @@ -4487,7 +4631,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.30.1" @@ -4499,7 +4643,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.30.1.2" @@ -4571,7 +4715,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.39.1" @@ -4665,7 +4809,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.4.4" @@ -4713,7 +4857,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.4.7.1" @@ -4725,7 +4869,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.4.7.1.1" @@ -4845,12 +4989,24 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.48.2" } ], + "B.1.1.529.2.86.1.1.48.3": [ + { + "pango": "JN.1.48.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null, + "unaliased": "B.1.1.529.2.86.1.1.48.3" + } + ], "B.1.1.529.2.86.1.1.49.1.1.1": [ { "pango": "MB.1.1", @@ -4939,7 +5095,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.6.1" @@ -4957,6 +5113,42 @@ "unaliased": "B.1.1.529.2.86.1.1.62" } ], + "B.1.1.529.2.86.1.1.63": [ + { + "pango": "JN.1.63", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 532, + "issue": 1513, + "labels": "Apparently slow, designated, S:153, S:680", + "state": "CLOSED", + "reason": "NOT_PLANNED", + "unaliased": "B.1.1.529.2.86.1.1.63" + } + ], + "B.1.1.529.2.86.1.1.63.1": [ + { + "pango": "JN.1.63.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 532, + "issue": 1513, + "labels": "Apparently slow, designated, S:153, S:680", + "state": "CLOSED", + "reason": "NOT_PLANNED", + "unaliased": "B.1.1.529.2.86.1.1.63.1" + } + ], + "B.1.1.529.2.86.1.1.65": [ + { + "pango": "JN.1.65", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 389, + "issue": 1097, + "labels": "To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.65" + } + ], "B.1.1.529.2.86.1.1.7": [ { "pango": "JN.1.7", @@ -5041,6 +5233,18 @@ "unaliased": "B.1.1.529.2.86.1.1.7.5.2.1" } ], + "B.1.1.529.2.86.1.1.7.9": [ + { + "pango": "JN.1.7.9", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null, + "unaliased": "B.1.1.529.2.86.1.1.7.9" + } + ], "B.1.1.529.2.86.1.1.8.1": [ { "pango": "JN.1.8.1", @@ -5059,7 +5263,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.8.2" @@ -5105,7 +5309,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.9.2.1" @@ -5117,7 +5321,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 498, "issue": 1559, - "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "labels": "recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.9.2.1.2.1" @@ -5129,7 +5333,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 509, "issue": 1620, - "labels": "S:445, DeFlirt, LB.1", + "labels": "S:445, DeFLiRT, LB.1", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.9.2.1.3.1" @@ -5141,12 +5345,36 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 489, "issue": 1557, - "labels": "designated, 2nuc mutation, s:1143, DeFlirt, LB.1", + "labels": "designated, 2nuc mutation, s:1143, DeFLiRT, LB.1", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.9.2.1.5" } ], + "B.1.1.529.2.86.1.1.9.2.1.7.1": [ + { + "pango": "LB.1.7.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 530, + "issue": 1641, + "labels": "Rapid review needed, designated, S:183, S:148, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.9.2.1.7.1" + } + ], + "B.1.1.529.2.86.1.1.9.2.1.7.3": [ + { + "pango": "LB.1.7.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 531, + "issue": 1555, + "labels": "Apparently slow, designated, NSP3, DeFLiRT, LB.1, S:34", + "state": "CLOSED", + "reason": "NOT_PLANNED", + "unaliased": "B.1.1.529.2.86.1.1.9.2.1.7.3" + } + ], "B.1.1.529.2.86.1.10": [ { "pango": "JN.10", @@ -5433,7 +5661,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.3.2.1.1" @@ -17905,7 +18133,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 498, "issue": 1559, - "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "labels": "recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "XDY" diff --git a/scripts/issue-milestone-collector/data/mappings.tsv b/scripts/issue-milestone-collector/data/mappings.tsv index b778ad71..ed3540b5 100644 --- a/scripts/issue-milestone-collector/data/mappings.tsv +++ b/scripts/issue-milestone-collector/data/mappings.tsv @@ -1,4 +1,5 @@ PANGO REPO MILESTONE ISSUE LABELS STATE REASON UNALIASED + sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN A.2.5.1 cov-lineages/pango-designation 25 33 designated CLOSED COMPLETED A.2.5.1 A.2.5.3 cov-lineages/pango-designation 89 168 designated CLOSED COMPLETED A.2.5.3 A.27 cov-lineages/pango-designation 6 11 designated CLOSED COMPLETED A.27 @@ -279,10 +280,10 @@ BA.2.86 cov-lineages/pango-designation 803 2183 designated, BA.2, Saltation CLOS JN.1.1 sars-cov-2-variants/lineage-proposals 378 987 Multiple lineages, designated, S:455, BA.2.86, Orf6, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.1 JN.1.1.1 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.1.1 JN.1.1.2 sars-cov-2-variants/lineage-proposals 382 1147 S:456, Apparently slow, partially designated, BA.2.86, JN.1, S:181, SLip CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.1.2 -JN.1.1.3 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.1.3 +JN.1.1.3 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.1.3 JN.1.1.4 cov-lineages/pango-designation 843 2476 CLOSED COMPLETED B.1.1.529.2.86.1.1.1.4 JN.1.1.4 sars-cov-2-variants/lineage-proposals 417 1259 designated, S:455, BA.2.86, S:1264, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.1.4 -JN.1.1.5 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.1.5 +JN.1.1.5 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.1.5 KR.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.1.5.1 KR.1.1 sars-cov-2-variants/lineage-proposals 488 1545 designated, ORF9b, S:59, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.1.5.1.1 KR.2 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.1.5.2 @@ -296,60 +297,71 @@ JN.1.11 cov-lineages/pango-designation 834 2446 CLOSED COMPLETED B.1.1.529.2.86 JN.1.11 sars-cov-2-variants/lineage-proposals 400 1262 designated, S:455, JN.1, S:1104 CLOSED COMPLETED B.1.1.529.2.86.1.1.11 JN.1.11.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.11.1 KP.1 sars-cov-2-variants/lineage-proposals 419 1364 S:456, Emerged in an undersampled area, designated, JN.1, S:1104, S:1086 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1 -KP.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1 +KP.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1 +MG.1 sars-cov-2-variants/lineage-proposals 521 1623 designated, s:182, S:679, S:572, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.1.1 KP.1.1.2 sars-cov-2-variants/lineage-proposals 473 1541 To be proposed, S:1162, S:1104, S:1086, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.2 -LP.1 sars-cov-2-variants/lineage-proposals 495 1591 designated, S:1229, DeFlirt CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.3.1 -LP.1.1 sars-cov-2-variants/lineage-proposals 513 1633 S.1229, S:255, DeFlirt CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.3.1.1 +LP.1 sars-cov-2-variants/lineage-proposals 495 1591 designated, S:1229, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.3.1 +LP.1.1 sars-cov-2-variants/lineage-proposals 513 1633 S.1229, S:255, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.3.1.1 KP.1.1.4 sars-cov-2-variants/lineage-proposals 494 1593 High local prevalence, designated, S:214, S:1104, S:1086, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.4 KP.1.2 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.2 -KP.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2 +KP.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2 KP.2.1 sars-cov-2-variants/lineage-proposals 439 1440 Emerged in an undersampled area, designated, Double Nuc mutations, S:1104, s:1201, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.1 KP.2.10 sars-cov-2-variants/lineage-proposals 469 1553 designated, S:59, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.10 KP.2.11 sars-cov-2-variants/lineage-proposals 470 1520 Small clusters ??, designated, KP.2, S:56 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.11 KP.2.12 sars-cov-2-variants/lineage-proposals 472 1550 designated, S:1176, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.12 KP.2.14 sars-cov-2-variants/lineage-proposals 481 1578 Rapid review needed, S:184, S:31, S:22, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.14 KP.2.2 sars-cov-2-variants/lineage-proposals 438 1446 Rapid review needed, designated, S:59, FLiRT, s:1266 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.2 -KP.2.3 sars-cov-2-variants/lineage-proposals 455 1459 To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFlirt CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3 +KP.2.3 sars-cov-2-variants/lineage-proposals 455 1459 To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3 KP.2.3.1 sars-cov-2-variants/lineage-proposals 471 1548 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3.1 -KP.2.3.3 sars-cov-2-variants/lineage-proposals 516 1618 To be proposed, Deletions/Truncations/Frameshifted, S:185, orf8, S:146, KP.2, DeFlirt CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3.3 -KP.2.3.4 sars-cov-2-variants/lineage-proposals 510 1596 Rapid review needed, designated, S:445, S:1104, S:146, KP.2, DeFlirt CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3.4 +KP.2.3.3 sars-cov-2-variants/lineage-proposals 516 1618 To be proposed, Deletions/Truncations/Frameshifted, S:185, orf8, S:146, KP.2, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3.3 +KP.2.3.4 sars-cov-2-variants/lineage-proposals 510 1596 Rapid review needed, designated, S:445, S:1104, S:146, KP.2, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.3.4 KP.2.4 sars-cov-2-variants/lineage-proposals 466 1524 designated, S:250, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.4 KP.2.5 sars-cov-2-variants/lineage-proposals 467 1527 Apparently slow, designated, S:185, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.5 KP.2.8 sars-cov-2-variants/lineage-proposals 468 1546 designated, S:60, KP.2 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.8 -KP.2.9 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.9 +KP.2.9 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.9 KP.3 sars-cov-2-variants/lineage-proposals 434 1410 S:456, Emerged in an undersampled area, designated, S:493, JN.1, S:1104 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3 KP.3.1.1 sars-cov-2-variants/lineage-proposals 480 1563 To be proposed, Deletions/Truncations/Frameshifted, designated, S:31, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.1 MC.1 sars-cov-2-variants/lineage-proposals 507 1638 designated, S:572, S:31, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.1.1 KP.3.1.2 sars-cov-2-variants/lineage-proposals 491 1589 S:151, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.2 -KP.3.1.3 sars-cov-2-variants/lineage-proposals 493 1576 Multiple lineages, designated, S:31, KP.3 OPEN B.1.1.529.2.86.1.1.11.1.3.1.3 +KP.3.1.3 sars-cov-2-variants/lineage-proposals 493 1576 Rapid review needed, Multiple lineages, designated, S:31, KP.3 OPEN REOPENED B.1.1.529.2.86.1.1.11.1.3.1.3 KP.3.1.4 sars-cov-2-variants/lineage-proposals 492 1562 To be proposed, Mutations outside spike, designated, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.4 +MM.1 sars-cov-2-variants/lineage-proposals 527 1624 designated, S:680, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.4.1 +MM.2 sars-cov-2-variants/lineage-proposals 526 1716 S:185, S:35, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.4.2 KP.3.1.5 sars-cov-2-variants/lineage-proposals 506 1614 designated, S:556, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.5 +MK.1 sars-cov-2-variants/lineage-proposals 523 1605 To be proposed, S:31, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.6.1 +MK.2 sars-cov-2-variants/lineage-proposals 524 1606 To be proposed, Emerged in an undersampled area, Mutations outside spike, designated, KP.3, S:745 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.6.2 KP.3.2.1 sars-cov-2-variants/lineage-proposals 487 1556 designated, S:31, KP.3, S:263 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.2.1 KP.3.2.5 sars-cov-2-variants/lineage-proposals 499 1604 designated CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.2.5 KP.3.3 sars-cov-2-variants/lineage-proposals 475 1531 To be proposed, ORF9b, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.3 KP.3.3.1 sars-cov-2-variants/lineage-proposals 508 1651 Rapid review needed, High local prevalence, designated, KP.3, S:547 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.3.1 -KP.4.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.1 +KP.3.3.2 sars-cov-2-variants/lineage-proposals 522 1673 Apparently slow, designated, ORF9b, S:435, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.3.2 +ML.1 sars-cov-2-variants/lineage-proposals 525 1683 To be proposed, High local prevalence, designated, S:681, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.3.3.1 +KP.3.4.1 sars-cov-2-variants/lineage-proposals 493 1576 Rapid review needed, Multiple lineages, designated, S:31, KP.3 OPEN REOPENED B.1.1.529.2.86.1.1.11.1.3.4.1 +KP.3.5 sars-cov-2-variants/lineage-proposals 529 1630 designated, s:213, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.5 +KP.4.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.1 KP.4.1.2 sars-cov-2-variants/lineage-proposals 505 1611 designated, FLiRT, S:441 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.1.2 -KP.4.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.2 +KP.4.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.2 KP.5 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.5 JN.1.12 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.12 JN.1.13 cov-lineages/pango-designation 844 2464 CLOSED COMPLETED B.1.1.529.2.86.1.1.13 KS.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.13.1.1 KS.1.1 sars-cov-2-variants/lineage-proposals 482 1565 N Glycan, S:22, S:59, S:1087, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.13.1.1.1 +KS.1.3 sars-cov-2-variants/lineage-proposals 520 1535 High local prevalence, Small clusters ??, designated, FLiRT, S:642 CLOSED COMPLETED B.1.1.529.2.86.1.1.13.1.1.3 JN.1.15.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.15.1 -LU.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.15.1.1 +LU.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.15.1.1 LU.2 sars-cov-2-variants/lineage-proposals 515 1652 High local prevalence, designated, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.15.1.2 JN.1.16 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.16 -JN.1.16.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1 +JN.1.16.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1 LF.1.1 sars-cov-2-variants/lineage-proposals 474 1448 To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.1.1 LF.1.1.1 sars-cov-2-variants/lineage-proposals 474 1448 To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.1.1.1 LF.3.1 sars-cov-2-variants/lineage-proposals 490 1558 designated, Double Nuc mutations, S:445, FLiRT, s:1143, S:745 CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.3.1 LF.3.1.1 sars-cov-2-variants/lineage-proposals 490 1558 designated, Double Nuc mutations, S:445, FLiRT, s:1143, S:745 CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.3.1.1 -LF.4.1 sars-cov-2-variants/lineage-proposals 514 1590 To be proposed, Rapid review needed, Truncated Orf(3-10), designated, orf8, DeFlirt CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.4.1 +LF.4.1 sars-cov-2-variants/lineage-proposals 514 1590 To be proposed, Rapid review needed, Truncated Orf(3-10), designated, orf8, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.4.1 +LF.5 sars-cov-2-variants/lineage-proposals 519 1627 designated, S:185, FLiRT, S:33 CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.5 JN.1.16.2 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.16.2 LA.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.16.2.1 -LA.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.2.2 -JN.1.18 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18 +LA.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.2.2 +JN.1.18 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18 JN.1.18.1 sars-cov-2-variants/lineage-proposals 431 1414 designated, S:346, JN.1, S:250 CLOSED COMPLETED B.1.1.529.2.86.1.1.18.1 LQ.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.1.1 LQ.1.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.1.1.1 @@ -358,15 +370,15 @@ JN.1.18.2 sars-cov-2-variants/lineage-proposals 441 1441 Convergent evolution, d JN.1.18.3 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.3 MA.1 sars-cov-2-variants/lineage-proposals 511 1635 To be proposed, designated, S:190, N Glycan, DeFViRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18.3.1 JN.1.18.4 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.4 -JN.1.18.5 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18.5 +JN.1.18.5 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18.5 JN.1.2 sars-cov-2-variants/lineage-proposals 267 1087 designated, BA.2.86, S:1229, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.2 JN.1.2.1 sars-cov-2-variants/lineage-proposals 409 1322 designated, S:1229, JN.1, S:1101 CLOSED COMPLETED B.1.1.529.2.86.1.1.2.1 JN.1.21 sars-cov-2-variants/lineage-proposals 415 1162 To be proposed, Multiple lineages, designated, BA.2.86, JN.1, S:1058 CLOSED COMPLETED B.1.1.529.2.86.1.1.21 JN.1.23 cov-lineages/pango-designation 845 2488 CLOSED COMPLETED B.1.1.529.2.86.1.1.23 JN.1.23.1 sars-cov-2-variants/lineage-proposals 486 1552 S:1264, NSP3, JN.1.23, S:137 CLOSED COMPLETED B.1.1.529.2.86.1.1.23.1 -JN.1.24.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.24.1 -LM.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.25.1.1 -JN.1.26 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.26 +JN.1.24.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.24.1 +LM.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.25.1.1 +JN.1.26 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.26 JN.1.27 sars-cov-2-variants/lineage-proposals 429 1403 designated, S:153, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.27 JN.1.28.1 sars-cov-2-variants/lineage-proposals 447 1244 Rapid review needed, S:456, designated, combo, PLPro, S:t572I CLOSED COMPLETED B.1.1.529.2.86.1.1.28.1 KW.1 sars-cov-2-variants/lineage-proposals 447 1244 Rapid review needed, S:456, designated, combo, PLPro, S:t572I CLOSED COMPLETED B.1.1.529.2.86.1.1.28.1.1 @@ -374,14 +386,14 @@ KW.1.1 sars-cov-2-variants/lineage-proposals 447 1244 Rapid review needed, S:456 KW.1.1.1 sars-cov-2-variants/lineage-proposals 476 1504 designated, S:95, Convergent Trio 346/456/572, FLIRT combo CLOSED COMPLETED B.1.1.529.2.86.1.1.28.1.1.1.1 LG.1 sars-cov-2-variants/lineage-proposals 476 1504 designated, S:95, Convergent Trio 346/456/572, FLIRT combo CLOSED COMPLETED B.1.1.529.2.86.1.1.28.1.1.1.1.1 JN.1.29.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.29.1 -JN.1.30.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.30.1 -KU.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.30.1.2 +JN.1.30.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.30.1 +KU.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.30.1.2 JN.1.31 sars-cov-2-variants/lineage-proposals 432 1319 designated, Branch, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.31 JN.1.32.1 sars-cov-2-variants/lineage-proposals 456 1442 S:183, S:572 CLOSED COMPLETED B.1.1.529.2.86.1.1.32.1 JN.1.35 sars-cov-2-variants/lineage-proposals 437 1362 designated, FCS, JN.1, S:680 CLOSED COMPLETED B.1.1.529.2.86.1.1.35 JN.1.36 sars-cov-2-variants/lineage-proposals 443 1326 designated, s:677, FCS, JN.1, S:680 CLOSED COMPLETED B.1.1.529.2.86.1.1.36 JN.1.36.1 sars-cov-2-variants/lineage-proposals 443 1326 designated, s:677, FCS, JN.1, S:680 CLOSED COMPLETED B.1.1.529.2.86.1.1.36.1 -JN.1.39.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.39.1 +JN.1.39.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.39.1 JN.1.39.3 sars-cov-2-variants/lineage-proposals 435 1395 To be proposed, Emerged in an undersampled area, High local prevalence, JN.1, S:67 CLOSED COMPLETED B.1.1.529.2.86.1.1.39.3 JN.1.4 sars-cov-2-variants/lineage-proposals 378 987 Multiple lineages, designated, S:455, BA.2.86, Orf6, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4 JN.1.4.1 sars-cov-2-variants/lineage-proposals 408 1175 designated, S:654, BA.2.86, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.1 @@ -389,12 +401,12 @@ JN.1.4.2 cov-lineages/pango-designation 839 2462 CLOSED COMPLETED B.1.1.529.2.8 JN.1.4.2 sars-cov-2-variants/lineage-proposals 413 1180 To be proposed, designated, S:455, BA.2.86, S:185, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.2 LL.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.4.2.1 JN.1.4.3 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.3 -JN.1.4.4 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.4 +JN.1.4.4 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.4 JN.1.4.5 sars-cov-2-variants/lineage-proposals 430 1171 To be proposed, designated, BA.2.86, JN.1 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.4.5 KV.2 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.5.2 JN.1.4.6 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.6 -LE.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1 -LE.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1.1 +LE.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1 +LE.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1.1 LE.1.3.1 sars-cov-2-variants/lineage-proposals 503 1612 designated, S:84, S:173, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1.3.1 JN.1.4.8 sars-cov-2-variants/lineage-proposals 496 1495 To be proposed, designated, S:60 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.8 JN.1.40 sars-cov-2-variants/lineage-proposals 442 1451 Emerged in an undersampled area, designated, S:31, S:58 CLOSED COMPLETED B.1.1.529.2.86.1.1.40 @@ -404,7 +416,8 @@ JN.1.44 sars-cov-2-variants/lineage-proposals 378 987 Multiple lineages, designa JN.1.47.1 sars-cov-2-variants/lineage-proposals 457 1318 Apparently slow, designated, S:455, JN.1, S:221 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.47.1 JN.1.47.2 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.47.2 JN.1.48.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.48.1 -JN.1.48.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.48.2 +JN.1.48.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.48.2 +JN.1.48.3 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.48.3 MB.1.1 sars-cov-2-variants/lineage-proposals 512 1659 designated, s:182, S:31, S:22, FViRT CLOSED COMPLETED B.1.1.529.2.86.1.1.49.1.1.1 JN.1.5 cov-lineages/pango-designation 829 2419 CLOSED COMPLETED B.1.1.529.2.86.1.1.5 JN.1.5 sars-cov-2-variants/lineage-proposals 381 1143 High local prevalence, designated, Double Nuc mutations, BA.2.86, JN.1, NSP13 CLOSED COMPLETED B.1.1.529.2.86.1.1.5 @@ -412,8 +425,11 @@ ME.1 sars-cov-2-variants/lineage-proposals 518 1657 S:346, JN.1.50 CLOSED COMPLE JN.1.55.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.55.1 JN.1.55.2 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.55.2 JN.1.57.1 sars-cov-2-variants/lineage-proposals 497 1460 designated, S:60 CLOSED COMPLETED B.1.1.529.2.86.1.1.57.1 -JN.1.6.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.6.1 +JN.1.6.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.6.1 JN.1.62 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.62 +JN.1.63 sars-cov-2-variants/lineage-proposals 532 1513 Apparently slow, designated, S:153, S:680 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.63 +JN.1.63.1 sars-cov-2-variants/lineage-proposals 532 1513 Apparently slow, designated, S:153, S:680 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.63.1 +JN.1.65 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.65 JN.1.7 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.7 JN.1.7.1 sars-cov-2-variants/lineage-proposals 420 1371 designated, S:346, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.1 JN.1.7.3 sars-cov-2-variants/lineage-proposals 452 1343 S:346, S:455, S:572, JN.1, S:680 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.7.3 @@ -421,15 +437,18 @@ JN.1.7.4 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages JN.1.7.5 sars-cov-2-variants/lineage-proposals 483 1374 S:572, JN.1, Lineage defining mutation further mutated, NSP5 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.5 LK.1 sars-cov-2-variants/lineage-proposals 483 1374 S:572, JN.1, Lineage defining mutation further mutated, NSP5 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.5.1 LK.2.1 sars-cov-2-variants/lineage-proposals 517 1679 S:346, S:455, S:572, 2nuc mutation, S:1150, S:547 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.5.2.1 +JN.1.7.9 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.7.9 JN.1.8.1 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.8.1 -JN.1.8.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.8.2 +JN.1.8.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.8.2 JN.1.9 cov-lineages/pango-designation 833 2410 CLOSED COMPLETED B.1.1.529.2.86.1.1.9 JN.1.9 sars-cov-2-variants/lineage-proposals 387 1096 designated, BA.2.86, S:183, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9 JN.1.9.1 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.1 -LB.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1 -LB.1.2.1 sars-cov-2-variants/lineage-proposals 498 1559 recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.2.1 -LB.1.3.1 sars-cov-2-variants/lineage-proposals 509 1620 S:445, DeFlirt, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.3.1 -LB.1.5 sars-cov-2-variants/lineage-proposals 489 1557 designated, 2nuc mutation, s:1143, DeFlirt, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.5 +LB.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1 +LB.1.2.1 sars-cov-2-variants/lineage-proposals 498 1559 recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.2.1 +LB.1.3.1 sars-cov-2-variants/lineage-proposals 509 1620 S:445, DeFLiRT, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.3.1 +LB.1.5 sars-cov-2-variants/lineage-proposals 489 1557 designated, 2nuc mutation, s:1143, DeFLiRT, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.5 +LB.1.7.1 sars-cov-2-variants/lineage-proposals 530 1641 Rapid review needed, designated, S:183, S:148, DeFLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.7.1 +LB.1.7.3 sars-cov-2-variants/lineage-proposals 531 1555 Apparently slow, designated, NSP3, DeFLiRT, LB.1, S:34 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.9.2.1.7.3 JN.10 sars-cov-2-variants/lineage-proposals 234 954 Multiple lineages, designated, partially designated, S:475, BA.2.86 CLOSED COMPLETED B.1.1.529.2.86.1.10 JN.11 sars-cov-2-variants/lineage-proposals 404 1303 Emerged in an undersampled area, designated, S:455, partially designated, BA.2.86, S:1104, JN.1 Spike CLOSED COMPLETED B.1.1.529.2.86.1.11 JN.11.1 sars-cov-2-variants/lineage-proposals 404 1303 Emerged in an undersampled area, designated, S:455, partially designated, BA.2.86, S:1104, JN.1 Spike CLOSED COMPLETED B.1.1.529.2.86.1.11.1 @@ -454,7 +473,7 @@ BA.2.86.2 sars-cov-2-variants/lineage-proposals 146 756 designated, BA.2.86 CLOS JQ.1 sars-cov-2-variants/lineage-proposals 144 906 designated, BA.2.86, S:95 CLOSED COMPLETED B.1.1.529.2.86.3.1 JQ.2 sars-cov-2-variants/lineage-proposals 426 1373 designated, S:346, S:455, BA.2.86, JN.1 Spike CLOSED COMPLETED B.1.1.529.2.86.3.2 JQ.2.1 sars-cov-2-variants/lineage-proposals 426 1373 designated, S:346, S:455, BA.2.86, JN.1 Spike CLOSED COMPLETED B.1.1.529.2.86.3.2.1 -JQ.2.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.3.2.1.1 +JQ.2.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.3.2.1.1 BA.2.86.4 sars-cov-2-variants/lineage-proposals 233 1032 designated, BA.2.86, S:222 CLOSED COMPLETED B.1.1.529.2.86.4 BA.2.9 cov-lineages/pango-designation 236 432 designated CLOSED COMPLETED B.1.1.529.2.9 BA.2.9.1 cov-lineages/pango-designation 250 530 designated CLOSED COMPLETED B.1.1.529.2.9.1 @@ -1502,7 +1521,7 @@ XDT cov-lineages/pango-designation 840 2485 CLOSED COMPLETED XDT XDT sars-cov-2-variants/lineage-proposals 416 1183 recombinant, designated, BA.2.86, S:174, XDT CLOSED COMPLETED XDT XDU sars-cov-2-variants/lineage-proposals 448 1084 recombinant, designated, BA.2.86, XDU CLOSED COMPLETED XDU XDW sars-cov-2-variants/lineage-proposals 458 1471 recombinant, designated, S:346, recombinant squared, S:701, XDW CLOSED COMPLETED XDW -XDY sars-cov-2-variants/lineage-proposals 498 1559 recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1 CLOSED COMPLETED XDY +XDY sars-cov-2-variants/lineage-proposals 498 1559 recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1 CLOSED COMPLETED XDY XDZ sars-cov-2-variants/lineage-proposals 504 1356 recombinant, Small clusters ??, designated, JN.1 Spike, XDZ CLOSED NOT_PLANNED XDZ XE cov-lineages/pango-designation 220 454 designated CLOSED COMPLETED XE XEB sars-cov-2-variants/lineage-proposals 501 1290 recombinant, recombinant squared, JN.1 Spike CLOSED COMPLETED XEB diff --git a/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json b/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json index 6597990b..d70b9750 100644 --- a/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json +++ b/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json @@ -4707,6 +4707,17 @@ "reason": "COMPLETED" } ], + "B.1.1.529.2.86.1.1.65": [ + { + "pango": "JN.1.65", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 389, + "issue": 1097, + "labels": "To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], "B.1.1.529.2.86.1.2.3": [ { "pango": "JN.2.3", @@ -5158,6 +5169,17 @@ "reason": null } ], + "B.1.1.529.2.86.1.1.7.9": [ + { + "pango": "JN.1.7.9", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null + } + ], "B.1.1.529.2.86.1.1.48.1": [ { "pango": "JN.1.48.1", @@ -5169,6 +5191,17 @@ "reason": null } ], + "B.1.1.529.2.86.1.1.48.3": [ + { + "pango": "JN.1.48.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null + } + ], "B.1.1.529.2.86.1.1.18.3": [ { "pango": "JN.1.18.3", @@ -5301,13 +5334,24 @@ "reason": null } ], + "": [ + { + "pango": "", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null + } + ], "B.1.1.529.2.86.1.1.1.3": [ { "pango": "JN.1.1.3", "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5318,7 +5362,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5329,7 +5373,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5340,7 +5384,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5351,7 +5395,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5362,7 +5406,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5373,7 +5417,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5384,7 +5428,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5395,7 +5439,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5406,7 +5450,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5417,7 +5461,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5428,7 +5472,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5439,7 +5483,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5450,7 +5494,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5461,7 +5505,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5472,7 +5516,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5483,7 +5527,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5494,7 +5538,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5505,7 +5549,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5516,7 +5560,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5527,7 +5571,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5538,7 +5582,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5549,7 +5593,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5560,7 +5604,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5571,7 +5615,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5582,7 +5626,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 425, "issue": 1089, - "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "labels": "Multiple lineages, designated, S:346, partially designated, JN.1, FLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -5912,7 +5956,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 455, "issue": 1459, - "labels": "To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFlirt", + "labels": "To be proposed, Deletions/Truncations/Frameshifted, partially designated, N Glycan, S:146, KP.2, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -6297,7 +6341,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 489, "issue": 1557, - "labels": "designated, 2nuc mutation, s:1143, DeFlirt, LB.1", + "labels": "designated, 2nuc mutation, s:1143, DeFLiRT, LB.1", "state": "CLOSED", "reason": "COMPLETED" } @@ -6352,9 +6396,20 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 493, "issue": 1576, - "labels": "Multiple lineages, designated, S:31, KP.3", + "labels": "Rapid review needed, Multiple lineages, designated, S:31, KP.3", "state": "OPEN", - "reason": null + "reason": "REOPENED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.4.1": [ + { + "pango": "KP.3.4.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 493, + "issue": 1576, + "labels": "Rapid review needed, Multiple lineages, designated, S:31, KP.3", + "state": "OPEN", + "reason": "REOPENED" } ], "B.1.1.529.2.86.1.1.11.1.1.1.4": [ @@ -6374,7 +6429,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 495, "issue": 1591, - "labels": "designated, S:1229, DeFlirt", + "labels": "designated, S:1229, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -6407,7 +6462,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 498, "issue": 1559, - "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "labels": "recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1", "state": "CLOSED", "reason": "COMPLETED" } @@ -6418,7 +6473,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 498, "issue": 1559, - "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "labels": "recombinant, S:190, S:1104, KP.2, DeFLiRT, KP.3, LB.1", "state": "CLOSED", "reason": "COMPLETED" } @@ -6539,7 +6594,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 509, "issue": 1620, - "labels": "S:445, DeFlirt, LB.1", + "labels": "S:445, DeFLiRT, LB.1", "state": "CLOSED", "reason": "COMPLETED" } @@ -6550,7 +6605,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 510, "issue": 1596, - "labels": "Rapid review needed, designated, S:445, S:1104, S:146, KP.2, DeFlirt", + "labels": "Rapid review needed, designated, S:445, S:1104, S:146, KP.2, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -6583,7 +6638,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 513, "issue": 1633, - "labels": "S.1229, S:255, DeFlirt", + "labels": "S.1229, S:255, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -6594,7 +6649,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 514, "issue": 1590, - "labels": "To be proposed, Rapid review needed, Truncated Orf(3-10), designated, orf8, DeFlirt", + "labels": "To be proposed, Rapid review needed, Truncated Orf(3-10), designated, orf8, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -6616,7 +6671,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 516, "issue": 1618, - "labels": "To be proposed, Deletions/Truncations/Frameshifted, S:185, orf8, S:146, KP.2, DeFlirt", + "labels": "To be proposed, Deletions/Truncations/Frameshifted, S:185, orf8, S:146, KP.2, DeFLiRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -6642,5 +6697,159 @@ "state": "CLOSED", "reason": "COMPLETED" } + ], + "B.1.1.529.2.86.1.1.16.1.5": [ + { + "pango": "LF.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 519, + "issue": 1627, + "labels": "designated, S:185, FLiRT, S:33", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.13.1.1.3": [ + { + "pango": "KS.1.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 520, + "issue": 1535, + "labels": "High local prevalence, Small clusters ??, designated, FLiRT, S:642", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.1.1.1.1": [ + { + "pango": "MG.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 521, + "issue": 1623, + "labels": "designated, s:182, S:679, S:572, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.3.2": [ + { + "pango": "KP.3.3.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 522, + "issue": 1673, + "labels": "Apparently slow, designated, ORF9b, S:435, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.6.1": [ + { + "pango": "MK.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 523, + "issue": 1605, + "labels": "To be proposed, S:31, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.6.2": [ + { + "pango": "MK.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 524, + "issue": 1606, + "labels": "To be proposed, Emerged in an undersampled area, Mutations outside spike, designated, KP.3, S:745", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.3.3.1": [ + { + "pango": "ML.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 525, + "issue": 1683, + "labels": "To be proposed, High local prevalence, designated, S:681, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.4.2": [ + { + "pango": "MM.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 526, + "issue": 1716, + "labels": "S:185, S:35, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.4.1": [ + { + "pango": "MM.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 527, + "issue": 1624, + "labels": "designated, S:680, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.5": [ + { + "pango": "KP.3.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 529, + "issue": 1630, + "labels": "designated, s:213, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.9.2.1.7.1": [ + { + "pango": "LB.1.7.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 530, + "issue": 1641, + "labels": "Rapid review needed, designated, S:183, S:148, DeFLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.9.2.1.7.3": [ + { + "pango": "LB.1.7.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 531, + "issue": 1555, + "labels": "Apparently slow, designated, NSP3, DeFLiRT, LB.1, S:34", + "state": "CLOSED", + "reason": "NOT_PLANNED" + } + ], + "B.1.1.529.2.86.1.1.63": [ + { + "pango": "JN.1.63", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 532, + "issue": 1513, + "labels": "Apparently slow, designated, S:153, S:680", + "state": "CLOSED", + "reason": "NOT_PLANNED" + } + ], + "B.1.1.529.2.86.1.1.63.1": [ + { + "pango": "JN.1.63.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 532, + "issue": 1513, + "labels": "Apparently slow, designated, S:153, S:680", + "state": "CLOSED", + "reason": "NOT_PLANNED" + } ] }