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Discovery of Self-Assembling pi-Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation

Code and notebooks to accompany "Discovery of Self-Assembling pi-Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation" (DOI: https://doi.org/10.1021/acs.jpcb.0c00708)

Contents

VAE

The VAE directory details the procedure for generating the VAE used for producing the latent space embeddings.

VAE notebook

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Active Learning

The ActiveLearning directory contains details the steps involved for a single active learning iteration.

GPR model selection notebook

Selecting candidates with AL

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