From c5858da095efed6b904771cebb91735bb199fbdc Mon Sep 17 00:00:00 2001
From: Nathan Thorpe <nathan@techstormpc.com>
Date: Sat, 19 Jun 2021 10:05:39 -0700
Subject: [PATCH] Fix code coverage output location (#4)

* change coverage output location

* update readme file
---
 .github/workflows/tests.yml | 5 ++---
 README.md                   | 4 ++--
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 3087892..907559b 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -23,12 +23,11 @@ jobs:
           pip install pytest
           pip install pytest-cov pylint
           python -m pytest tests --doctest-modules -o junit_family=xunit2 \
-            --junitxml=junit/test-results.xml \
-            --cov=bin tests/ --cov-report xml:junit/coverage.xml
+            --junitxml=test-results.xml \
+            --cov=bin tests/ --cov-report xml:coverage.xml
       - name: publish coverage
         uses: codecov/codecov-action@v1
         with:
-          directory: junit/
           files: coverage.xml
 
   integration:
diff --git a/README.md b/README.md
index c1486e8..da38465 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,6 @@
 # InterOp QC Reporting - Nextflow
 
-Workflow used to generate QC metrics from the output of an Illumina sequencing run
+Workflow used to generate QC metrics from the output of an Illumina sequencing run.
 
 [![Run tests](https://github.com/FredHutch/interop-nf/actions/workflows/tests.yml/badge.svg)](https://github.com/FredHutch/interop-nf/actions/workflows/tests.yml)
 
@@ -24,7 +24,7 @@ The run folder must contain the `InterOp/` folder and the `RunInfo.xml` and `Run
 
 ## Workflow output
 
-View more [here](sample_output/README.md).
+[View more info here](sample_output/README.md).
 
 ## Other information