config files

[gianfilippo]

Hi,

do you have config files templates and/or a format description ?

Thanks

[jrboyd]

Hi! Sorry for the slow reply. I was travelling for a conference.

Indeed, there are example config files distributed with the package. You can find them this way:
dir(system.file(package = "ssvQC", "extdata"), pattern = "csv$", full.names = TRUE)

A more convenient alternative may be to create a basic config object and then save that. Like so:
ex_np_cfg = QcConfigFeatures.files("f1.narrowPeak")
QcConfigFeatures.save_config(ex_np_cfg, "example_feature_cfg.csv")

Here I used the .files function but you could use one of the other functions to create a baseline QcConfigFeatures object. And likewise for QcConfigSignal