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Error witho Bio.Alphabet #2

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GM110Z opened this issue Apr 5, 2023 · 0 comments
Open

Error witho Bio.Alphabet #2

GM110Z opened this issue Apr 5, 2023 · 0 comments

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@GM110Z
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GM110Z commented Apr 5, 2023

Hello

I have successfully used FlaGs2 before but now that I have changed computer and re-installed every dependency, it throw an error about Bio.Alphabet (see below). Any suggestions?

Traceback (most recent call last):
File "/home/giusym/binfiles/FlaGs2/FlaGs2.py", line 9, in
from Bio.Alphabet import generic_protein, IUPAC
File "/home/.local/lib/python3.9/site-packages/Bio/Alphabet/init.py", line 20, in
raise ImportError(
ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a few cases, you may need to specify the molecule_type as an annotation on a SeqRecord for your script to work correctly. Please see https://biopython.org/wiki/Alphabet for more information.

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