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Feature request: FLAGs with custom (non-NCBI) genomes + anchor protein #3

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joelwwh opened this issue Aug 21, 2023 · 0 comments
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@joelwwh
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joelwwh commented Aug 21, 2023

First of - thank you for creating this incredibly useful tool, it has significantly improved my ability to scan genome neighborhoods for worksflow wheere used NCBI genomes for analyses.

One feature I was hoping could be added would be the ability to supply your own genome sequences and the corresponding anchor protein? I'm envisioning something like what is already in the "-a" flag where we supply the NCBI genome accession followed by the protein accession, but now we supply the ID of genomes and the proteins (linked to a source file where the program can draw on the sequence for its comparative analyses)

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