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Source code for geouned.GEOUNED

+# Init file of GEOUNED module
+#
+
+# We load the STEP and the materials
+
+import configparser
+import logging
+import typing
+import json
+from datetime import datetime
+from os import mkdir, path
+from typing import get_type_hints
+
+import FreeCAD
+import Part
+from tqdm import tqdm
+from pathlib import Path
+
+from .CodeVersion import *
+from .Conversion import CellDefinition as Conv
+from .Cuboid.translate import translate
+from .Decompose import Decom_one as Decom
+from .LoadFile import LoadSTEP as Load
+from .Utils import Functions as UF
+from .Utils.BooleanSolids import build_c_table_from_solids
+from .Void import Void as Void
+from .Write.Functions import write_mcnp_cell_def
+from .Write.WriteFiles import write_geometry
+from .Utils.data_classes import Options, Tolerances, NumericFormat, Settings
+
+logger = logging.getLogger(__name__)
+
+
+
+[docs] +class CadToCsg: + """Base class for the conversion of CAD to CSG models + + Args: + stepFile (str, optional): Name of the CAD file (in STEP format) to + be converted. Defaults to "". + options (geouned.Options, optional): An instance of a geouned.Options + class with the attributes set for the desired conversion. Defaults + to a geouned.Options with default attributes values. + tolerances (geouned.Tolerances, optional): An instance of a + geouned.Tolerances class with the attributes set for the desired + conversion. Defaults to a geouned.Tolerances with default + attributes values. + numeric_format (geouned.NumericFormat, optional): An instance of a + geouned.NumericFormat class with the attributes set for the desired + conversion. Defaults to a geouned.NumericFormat with default + attributes values. + settings (geouned.Settings, optional): An instance of a + geouned.Settings class with the attributes set for the desired + conversion. Defaults to a geouned.Settings with default + attributes values. + """ + + def __init__( + self, + stepFile: str = "", + options: Options = Options(), + tolerances: Tolerances = Tolerances(), + numeric_format: NumericFormat = NumericFormat(), + settings: Settings = Settings(), + ): + + self.stepFile = stepFile + self.options = options + self.tolerances = tolerances + self.numeric_format = numeric_format + self.settings = settings + +
+[docs] + def export_csg( + self, + title: str = "Converted with GEOUNED", + geometryName: str = "csg", + outFormat: typing.Tuple[str] = ( + "openMC_XML", + "openMC_PY", + "serpent", + "phits", + "mcnp", + ), + volSDEF: bool = False, + volCARD: bool = True, + UCARD: int = 101, + dummyMat: bool = False, + cellCommentFile: bool = False, + cellSummaryFile: bool = True, + ): + """Writes out a CSG file in the requested Monte Carlo code format. + + Args: + title (str, optional): Title of the model written at the top of the + output file. Defaults to "Geouned conversion". + geometryName (str, optional): the file stem of the output file(s). + Defaults to "converted_with_geouned". + outFormat (typing.Tuple[str], optional): Format for the output + geometry. Available format are: "mcnp", "openMC_XML", + "openMC_PY", "phits" and "serpent". Several output format can + be written in the same method call. Defaults to output all codes. + volSDEF (bool, optional): Write SDEF definition and tally of solid + cell for stochastic volume checking. Defaults to False. + volCARD (bool, optional): Write the CAD calculated volume in the + cell definition using the VOL card. Defaults to True. + UCARD (int, optional): Write universe card in the cell definition + with the specified universe number (if value = 0 Universe card + is not written). Defaults to None. + dummyMat (bool, optional): Write dummy material definition card in + the MCNP output file for all material labels present in the + model. Dummy material definition is "MX 1001 1". Defaults to False. + cellCommentFile (bool, optional): Write an additional file with + comment associated to each CAD cell in the MCNP output file. + Defaults to False. + cellSummaryFile (bool, optional): Write an additional file with + information on the CAD cell translated. Defaults to True. + """ + + write_geometry( + UniverseBox=self.UniverseBox, + MetaList=self.MetaList, + Surfaces=self.Surfaces, + settings=self.settings, + options=self.options, + tolerances=self.tolerances, + numeric_format=self.numeric_format, + geometryName=geometryName, + outFormat=outFormat, + cellCommentFile=cellCommentFile, + cellSummaryFile=cellSummaryFile, + title=title, + volSDEF=volSDEF, + volCARD=volCARD, + UCARD=UCARD, + dummyMat=dummyMat, + stepFile=self.stepFile, + ) + + logger.info("End of Monte Carlo code translation phase")
+ + +
+[docs] + @classmethod + def from_json(cls, filename: str): + """Creates a CadToCsg instance and returns the instance. Populating the + Options, Tolerance, Settings and NumericFormat attributes from matching + key names in the JSON. If export_to_csg key is present then this method + also runs .start() and .export_to_csg() on the instance. + + Args: + filename str: The filename of the config file. Defaults to "config.json". + + Raises: + FileNotFoundError: If the config file is not found + ValueError: If the config JSON file is found to contain an invalid key + + Returns: + geouned.CadToCsg: returns a geouned CadToCsg class instance. + """ + + if not Path(filename).exists(): + raise FileNotFoundError(f"config file {filename} not found") + + with open(filename) as f: + config = json.load(f) + + cad_to_csg = cls(stepFile=config["stepFile"]) + for key in config.keys(): + + if key in ["stepFile", "export_csg"]: + pass # these two keys are used before or after this loop + + elif key == "Tolerances": + cad_to_csg.tolerances = Tolerances(**config["Tolerances"]) + + elif key == "Options": + cad_to_csg.options = Options(**config["Options"]) + + elif key == "NumericFormat": + cad_to_csg.numeric_format = NumericFormat(**config["NumericFormat"]) + + elif key == "Settings": + cad_to_csg.settings = Settings(**config["Settings"]) + + else: + raise ValueError( + f"Invalid key '{key}' found in config file {filename}. Acceptable key names are 'stepFile', 'export_csg', 'Settings', 'Parameters', 'Tolerances' and 'NumericFormat'" + ) + + cad_to_csg.start() + if "export_csg" in config.keys(): + cad_to_csg.export_csg(**config["export_csg"]) + else: + cad_to_csg.export_csg() + return cad_to_csg
+ + + # TODO add tests as set_configuration is not currently tested + def set_configuration(self, configFile=None): + + if configFile is None: + return + + config = configparser.ConfigParser() + config.optionxform = str + config.read(configFile) + for section in config.sections(): + if section == "Files": + for key in config["Files"].keys(): + if key in ("geometryName", "matFile", "title"): + self.set(key, config.get("Files", key)) + + elif key == "stepFile": + value = config.get("Files", key).strip() + lst = value.split() + if value[0] in ("(", "[") and value[-1] in ("]", ")"): + data = value[1:-1].split(",") + data = [x.strip() for x in data] + self.set(key, data) + elif len(lst) > 1: + self.set(key, lst) + else: + self.set(key, value) + + elif key == "outFormat": + raw = config.get("Files", key).strip() + values = tuple(x.strip() for x in raw.split(",")) + outFormat = [] + for v in values: + if v.lower() == "mcnp": + outFormat.append("mcnp") + elif v.lower() == "openmc_xml": + outFormat.append("openMC_XML") + elif v.lower() == "openmc_py": + outFormat.append("openMC_PY") + elif v.lower() == "serpent": + outFormat.append("serpent") + elif v.lower() == "phits": + outFormat.append("phits") + self.set(key, tuple(outFormat)) + + elif section == "Parameters": + for key in config["Parameters"].keys(): + if key in ( + "voidGen", + "debug", + "compSolids", + "volSDEF", + "volCARD", + "dummyMat", + "cellSummaryFile", + "cellCommentFile", + "sort_enclosure", + ): + self.set(key, config.getboolean("Parameters", key)) + elif key in ( + "minVoidSize", + "maxSurf", + "maxBracket", + "startCell", + "startSurf", + ): + self.set(key, config.getint("Parameters", key)) + elif key in ("exportSolids", "UCARD", "simplify"): + self.set(key, config.get("Parameters", key)) + elif key == "voidMat": + value = config.get("Parameters", key).strip() + data = value[1:-1].split(",") + self.set(key, (int(data[0]), float(data[1]), data[2])) + else: + value = config.get("Parameters", key).strip() + data = value[1:-1].split(",") + self.set(key, tuple(map(int, data))) + + elif section == "Options": + attributes_and_types = get_type_hints(Options()) + for key in config["Options"].keys(): + if key in attributes_and_types.keys(): + if attributes_and_types[key] is bool: + value = config.getboolean("Options", key) + elif ( + attributes_and_types[key] is float + or attributes_and_types[key] is int + ): + value = config.getfloat("Options", key) + setattr(self.options, key, value) + + elif section == "Tolerances": + attributes_and_types = get_type_hints(Tolerances()) + for key in config["Tolerances"].keys(): + if key in attributes_and_types.keys(): + if attributes_and_types[key] is bool: + value = config.getboolean("Tolerances", key) + elif attributes_and_types[key] is float: + value = config.getfloat("Tolerances", key) + setattr(self.tolerances, key, value) + + elif section == "MCNP_Numeric_Format": + attributes_and_types = get_type_hints(NumericFormat()) + PdEntry = False + for key in config["MCNP_Numeric_Format"].keys(): + if key in attributes_and_types.keys(): + value = config.get("MCNP_Numeric_Format", key) + setattr(self.numeric_format, key, value) + if key == "P_d": + PdEntry = True + + else: + logger.info(f"bad section name : {section}") + + if self.__dict__["geometryName"] == "": + self.__dict__["geometryName"] = self.__dict__["stepFile"][:-4] + + # TODO see if we can find another way to do this + if self.options.prnt3PPlane and not PdEntry: + self.NumericFormat.P_d = "22.15e" + + logger.info(self.__dict__) + + # TODO add tests as set is not currently tested + def set(self, kwrd, value): + + if kwrd == "stepFile": + if isinstance(value, (list, tuple)): + for v in value: + if not isinstance(v, str): + logger.info(f"elemt in {kwrd} list should be string") + return + elif not isinstance(value, str): + logger.info(f"{kwrd} should be string or tuple of strings") + return + + elif kwrd == "UCARD": + if value == "None": + value = None + elif value.isdigit(): + value = int(value) + else: + logger.info(f"{kwrd} value should be None or integer") + return + elif kwrd == "outFormat": + if len(value) == 0: + return + elif kwrd in ("geometryName", "matFile", "exportSolids"): + if not isinstance(value, str): + logger.info(f"{kwrd} value should be str instance") + return + elif kwrd in ("cellRange", "voidMat", "voidExclude"): + if not isinstance(value, (list, tuple)): + logger.info(f"{kwrd} value should be list or tuple") + return + elif kwrd in ("minVoidSize", "maxSurf", "maxBracket", "startCell", "startSurf"): + if not isinstance(value, int): + logger.info(f"{kwrd} value should be integer") + return + elif kwrd in ( + "voidGen", + "debug", + "compSolids", + "simplifyCTable", + "volSDEF", + "volCARD", + "dummyMat", + "cellSummaryFile", + "cellCommentFile", + "sort_enclosure", + ): + if not isinstance(value, bool): + logger.info(f"{kwrd} value should be boolean") + return + + self.__dict__[kwrd] = value + if kwrd == "stepFile" and self.__dict__["geometryName"] == "": + if isinstance(value, (tuple, list)): + self.__dict__["geometryName"] == "joined_step_files" + else: + self.__dict__["geometryName"] == value[:-4] + + def start(self): + + logger.info("start") + freecad_version = ".".join(FreeCAD.Version()[:3]) + logger.info( + f"GEOUNED version {GEOUNED_Version} {GEOUNED_ReleaseDate} \nFreeCAD version {freecad_version}" + ) + + if self.stepFile == "": + raise ValueError("Cannot run the code. Step file name is missing") + + if isinstance(self.stepFile, (tuple, list)): + for stp in self.stepFile: + if not path.isfile(stp): + raise FileNotFoundError(f"Step file {stp} not found.\nStop.") + else: + if not path.isfile(self.stepFile): + raise FileNotFoundError(f"Step file {self.stepFile} not found.\nStop.") + + startTime = datetime.now() + + if isinstance(self.stepFile, (list, tuple)): + step_files = self.stepFile + else: + step_files = [self.stepFile] + MetaChunk = [] + EnclosureChunk = [] + for stp in tqdm(step_files, desc="Loading CAD files"): + logger.info(f"read step file : {stp}") + Meta, Enclosure = Load.load_cad(stp, self.settings, self.options) + MetaChunk.append(Meta) + EnclosureChunk.append(Enclosure) + self.MetaList = join_meta_lists(MetaChunk) + EnclosureList = join_meta_lists(EnclosureChunk) + + logger.info("End of loading phase") + tempstr1 = str(datetime.now() - startTime) + logger.info(tempstr1) + tempTime = datetime.now() + + # Select a specific solid range from original STEP solids + if self.settings.cellRange: + self.MetaList = self.MetaList[ + self.settings.cellRange[0] : self.settings.cellRange[1] + ] + + # export in STEP format solids read from input file + # terminate excution + if self.settings.exportSolids != "": + solids = [] + for m in self.MetaList: + if m.IsEnclosure: + continue + solids.extend(m.Solids) + Part.makeCompound(solids).exportStep(self.settings.exportSolids) + msg = ( + f"Solids exported in file {self.settings.exportSolids}\n" + "GEOUNED Finish. No solid translation performed." + ) + raise ValueError(msg) + + # set up Universe + if EnclosureList: + self.UniverseBox = get_universe(self.MetaList + EnclosureList) + else: + self.UniverseBox = get_universe(self.MetaList) + + self.Surfaces = UF.SurfacesDict(offset=self.settings.startSurf - 1) + + warnSolids = [] + warnEnclosures = [] + coneInfo = dict() + tempTime0 = datetime.now() + if not self.options.Facets: + + # decompose all solids in elementary solids (convex ones) + warningSolidList = decompose_solids( + self.MetaList, + self.Surfaces, + self.UniverseBox, + self.settings, + True, + self.options, + self.tolerances, + self.numeric_format, + ) + + # decompose Enclosure solids + if self.settings.voidGen and EnclosureList: + warningEnclosureList = decompose_solids( + EnclosureList, + self.Surfaces, + self.UniverseBox, + self.settings, + False, + self.options, + self.tolerances, + self.numeric_format, + ) + + logger.info("End of decomposition phase") + + # start Building CGS cells phase + + for j, m in enumerate(tqdm(self.MetaList, desc="Translating solid cells")): + if m.IsEnclosure: + continue + logger.info(f"Building cell: {j+1}") + cones = Conv.cellDef( + m, + self.Surfaces, + self.UniverseBox, + self.options, + self.tolerances, + self.numeric_format, + ) + if cones: + coneInfo[m.__id__] = cones + if j in warningSolidList: + warnSolids.append(m) + if not m.Solids: + logger.info(f"none {j}, {m.__id__}") + logger.info(m.Definition) + + if self.options.forceNoOverlap: + Conv.no_overlapping_cell(self.MetaList, self.Surfaces, self.options) + + else: + translate( + self.MetaList, + self.Surfaces, + self.UniverseBox, + self.settings, + self.options, + self.tolerances, + ) + # decompose Enclosure solids + if self.settings.voidGen and EnclosureList: + warningEnclosureList = decompose_solids( + EnclosureList, + self.Surfaces, + self.UniverseBox, + self.settings, + False, + self.options, + self.tolerances, + self.numeric_format, + ) + + tempstr2 = str(datetime.now() - tempTime) + logger.info(tempstr2) + + # building enclosure solids + + if self.settings.voidGen and EnclosureList: + for j, m in enumerate(EnclosureList): + logger.info(f"Building Enclosure Cell: {j + 1}") + cones = Conv.cellDef( + m, + self.Surfaces, + self.UniverseBox, + self.options, + self.tolerances, + self.numeric_format, + ) + if cones: + coneInfo[m.__id__] = cones + if j in warningEnclosureList: + warnEnclosures.append(m) + + tempTime1 = datetime.now() + + # void generation phase + MetaVoid = [] + if self.settings.voidGen: + logger.info("Build Void") + logger.info(self.settings.voidExclude) + if not self.settings.voidExclude: + MetaReduced = self.MetaList + else: + MetaReduced = exclude_cells(self.MetaList, self.settings.voidExclude) + + if self.MetaList: + init = self.MetaList[-1].__id__ - len(EnclosureList) + else: + init = 0 + MetaVoid = Void.void_generation( + MetaReduced, + EnclosureList, + self.Surfaces, + self.UniverseBox, + self.settings, + init, + self.options, + self.tolerances, + self.numeric_format, + ) + + # if self.settings.simplify == 'full' and not self.options.forceNoOverlap: + if self.settings.simplify == "full": + Surfs = {} + for lst in self.Surfaces.values(): + for s in lst: + Surfs[s.Index] = s + + for c in tqdm(self.MetaList, desc="Simplifying"): + if c.Definition.level == 0 or c.IsEnclosure: + continue + logger.info(f"simplify cell {c.__id__}") + Box = UF.get_box(c) + CT = build_c_table_from_solids(Box, (c.Surfaces, Surfs), option="full") + c.Definition.simplify(CT) + c.Definition.clean() + if type(c.Definition.elements) is bool: + logger.info( + f"unexpected constant cell {c.__id__} :{c.Definition.elements}" + ) + + tempTime2 = datetime.now() + logger.info(f"build Time: {tempTime2} - {tempTime1}") + + logger.info(datetime.now() - startTime) + + cellOffSet = self.settings.startCell - 1 + if EnclosureList and self.settings.sort_enclosure: + # sort group solid cell / void cell sequence in each for each enclosure + # if a solid belong to several enclosure, its definition will be written + # for the highest enclosure level or if same enclosure level in the first + # enclosure found + self.MetaList = sort_enclosure(self.MetaList, MetaVoid, cellOffSet) + else: + # remove Null Cell and apply cell numbering offset + deleted = [] + idLabel = {0: 0} + icount = cellOffSet + for i, m in enumerate(self.MetaList): + if m.NullCell or m.IsEnclosure: + deleted.append(i) + continue + + icount += 1 + m.label = icount + idLabel[m.__id__] = m.label + + for i in reversed(deleted): + del self.MetaList[i] + + lineComment = """\ +########################################################## + VOID CELLS +##########################################################""" + mc = UF.GeounedSolid(None) + mc.Comments = lineComment + self.MetaList.append(mc) + + deleted = [] + for i, m in enumerate(MetaVoid): + if m.NullCell: + deleted.append(i) + continue + icount += 1 + m.label = icount + update_comment(m, idLabel) + for i in reversed(deleted): + del MetaVoid[i] + + self.MetaList.extend(MetaVoid) + + print_warning_solids(warnSolids, warnEnclosures) + + # add plane definition to cone + process_cones( + self.MetaList, + coneInfo, + self.Surfaces, + self.UniverseBox, + self.options, + self.tolerances, + self.numeric_format, + ) + + logger.info("Process finished") + logger.info(datetime.now() - startTime) + + logger.info(f"Translation time of solid cells {tempTime1} - {tempTime0}") + logger.info(f"Translation time of void cells {tempTime2} - {tempTime1}")
+ + + +def decompose_solids( + MetaList, Surfaces, UniverseBox, setting, meta, options, tolerances, numeric_format +): + totsolid = len(MetaList) + warningSolids = [] + for i, m in enumerate(tqdm(MetaList, desc="Decomposing solids")): + if meta and m.IsEnclosure: + continue + logger.info(f"Decomposing solid: {i + 1}/{totsolid}") + if setting.debug: + logger.info(m.Comments) + if not path.exists("debug"): + mkdir("debug") + if m.IsEnclosure: + m.Solids[0].exportStep(f"debug/origEnclosure_{i}.stp") + else: + m.Solids[0].exportStep(f"debug/origSolid_{i}.stp") + + comsolid, err = Decom.SplitSolid( + Part.makeCompound(m.Solids), + UniverseBox, + options, + tolerances, + numeric_format, + ) + + if err != 0: + if not path.exists("Suspicious_solids"): + mkdir("Suspicious_solids") + if m.IsEnclosure: + Part.CompSolid(m.Solids).exportStep( + f"Suspicious_solids/Enclosure_original_{i}.stp" + ) + comsolid.exportStep(f"Suspicious_solids/Enclosure_split_{i}.stp") + else: + Part.CompSolid(m.Solids).exportStep( + f"Suspicious_solids/Solid_original_{i}.stp" + ) + comsolid.exportStep(f"Suspicious_solids/Solid_split_{i}.stp") + + warningSolids.append(i) + + if setting.debug: + if m.IsEnclosure: + comsolid.exportStep(f"debug/compEnclosure_{i}.stp") + else: + comsolid.exportStep(f"debug/compSolid_{i}.stp") + Surfaces.extend( + Decom.extract_surfaces( + comsolid, + "All", + UniverseBox, + options, + tolerances, + numeric_format, + MakeObj=True, + ), + options, + tolerances, + numeric_format, + ) + m.set_cad_solid() + m.update_solids(comsolid.Solids) + + return warningSolids + + +def update_comment(meta, idLabel): + if meta.__commentInfo__ is None: + return + if meta.__commentInfo__[1] is None: + return + newLabel = (idLabel[i] for i in meta.__commentInfo__[1]) + meta.set_comments(Void.void_comment_line((meta.__commentInfo__[0], newLabel))) + + +def process_cones( + MetaList, coneInfo, Surfaces, UniverseBox, options, tolerances, numeric_format +): + cellId = tuple(coneInfo.keys()) + for m in MetaList: + if m.__id__ not in cellId and not m.Void: + continue + + if m.Void and m.__commentInfo__ is not None: + if m.__commentInfo__[1] is None: + continue + cones = set() + for Id in m.__commentInfo__[1]: + if Id in cellId: + cones.update(-x for x in coneInfo[Id]) + Conv.add_cone_plane( + m.Definition, + cones, + Surfaces, + UniverseBox, + options, + tolerances, + numeric_format, + ) + elif not m.Void: + Conv.add_cone_plane( + m.Definition, + coneInfo[m.__id__], + Surfaces, + UniverseBox, + options, + tolerances, + numeric_format, + ) + + +def get_universe(MetaList): + d = 10 + Box = MetaList[0].BoundBox + xmin = Box.XMin + xmax = Box.XMax + ymin = Box.YMin + ymax = Box.YMax + zmin = Box.ZMin + zmax = Box.ZMax + for m in MetaList[1:]: + # MIO. This was removed since in HELIAS the enclosure cell is the biggest one + # if m.IsEnclosure: continue + xmin = min(m.BoundBox.XMin, xmin) + xmax = max(m.BoundBox.XMax, xmax) + ymin = min(m.BoundBox.YMin, ymin) + ymax = max(m.BoundBox.YMax, ymax) + zmin = min(m.BoundBox.ZMin, zmin) + zmax = max(m.BoundBox.ZMax, zmax) + + return FreeCAD.BoundBox( + FreeCAD.Vector(xmin - d, ymin - d, zmin - d), + FreeCAD.Vector(xmax + d, ymax + d, zmax + d), + ) + + +def print_warning_solids(warnSolids, warnEnclosures): + + if warnSolids or warnEnclosures: + fic = open("Warning_Solids_definition.txt", "w") + else: + return + + if warnSolids: + lines = "Solids :\n" + for sol in warnSolids: + lines += "\n" + lines += f"{sol.label}\n" + lines += f"{sol.Comments}\n" + lines += f"{write_mcnp_cell_def(sol.Definition)}\n" + fic.write(lines) + + if warnEnclosures: + lines = "Enclosures :\n" + for sol in warnEnclosures: + lines += "\n" + lines += f"{sol.label}\n" + lines += f"{sol.Comments}\n" + lines += f"{write_mcnp_cell_def(sol.Definition)}\n" + + fic.write(lines) + + fic.close() + + +def join_meta_lists(MList): + + newMetaList = MList[0] + if MList[0]: + for M in MList[1:]: + lastID = newMetaList[-1].__id__ + 1 + for i, meta in enumerate(M): + meta.__id__ = lastID + i + newMetaList.append(meta) + + return newMetaList + + +def exclude_cells(MetaList, labelList): + voidMeta = [] + for m in MetaList: + if m.IsEnclosure: + continue + found = False + for label in labelList: + if label in m.Comments: + found = True + break + if not found: + voidMeta.append(m) + + return voidMeta + + +def sort_enclosure(MetaList, MetaVoid, offSet=0): + + newList = {} + for m in MetaVoid: + if m.EnclosureID in newList.keys(): + newList[m.EnclosureID].append(m) + else: + newList[m.EnclosureID] = [m] + + icount = offSet + idLabel = {0: 0} + newMeta = [] + for m in MetaList: + if m.NullCell: + continue + if m.IsEnclosure: + lineComment = f"""########################################################## + ENCLOSURE {m.EnclosureID} +##########################################################""" + mc = UF.GeounedSolid(None) + mc.Comments = lineComment + newMeta.append(mc) + for e in newList[m.EnclosureID]: + if e.NullCell: + continue + icount += 1 + e.label = icount + idLabel[e.__id__] = e.label + newMeta.append(e) + lineComment = f"""########################################################## + END ENCLOSURE {m.EnclosureID} +##########################################################""" + mc = UF.GeounedSolid(None) + mc.Comments = lineComment + newMeta.append(mc) + + else: + icount += 1 + m.label = icount + idLabel[m.__id__] = m.label + newMeta.append(m) + + lineComment = """\ +########################################################## + VOID CELLS +##########################################################""" + mc = UF.GeounedSolid(None) + mc.Comments = lineComment + newMeta.append(mc) + + for v in newList[0]: + if v.NullCell: + continue + icount += 1 + v.label = icount + idLabel[v.__id__] = v.label + newMeta.append(v) + + for m in newMeta: + if not m.Void: + continue + if m.IsEnclosure: + continue + update_comment(m, idLabel) + + return newMeta +
+ +
+
+ +
+
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+
+ + + + \ No newline at end of file diff --git a/_modules/geouned/GEOUNED/Utils/data_classes.html b/_modules/geouned/GEOUNED/Utils/data_classes.html new file mode 100644 index 00000000..1fa54a40 --- /dev/null +++ b/_modules/geouned/GEOUNED/Utils/data_classes.html @@ -0,0 +1,1074 @@ + + + + + + geouned.GEOUNED.Utils.data_classes — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + +
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+ +

Source code for geouned.GEOUNED.Utils.data_classes

+from numbers import Real
+
+
+
+[docs] +class Options: + """A class for containing conversion options + + Args: + forceCylinder (bool, optional): Use cylinder (instead of cones) as + ancillary surface where unclosed torus surfaces are involved in + the solid definition. Defaults to False. + newSplitPlane (bool, optional): New method to consider plane as + cutting surface during the decomposition process. Former method + split first planes perpendicular to X,Y,Z axis and then the + other planes involved in the solid definition. New method group + all parallel planes independently whether their normal are + along X,Y,Z axes, and start the decomposition process cutting + first with the group having the highest number of parallel + planes. Defaults to True. + delLastNumber (bool, optional): Deleting the last word in the + comment if it is a number. Defaults to False. + enlargeBox (Real, optional): Enlarge box boundary when evaluating + the constraint table during the simplification of the void cell + definition. (unit is millimeter). Defaults to 2. + nPlaneReverse (int, optional): Threshold value to determine whether + cut with parallel planes should be carried out first. Defaults + to 0. + splitTolerance (Real, optional): Fuzzy tolerance value used in the + FreeCAD function “BOPTools.SplitAPI.slice”. This function is + used during the solid decomposition process. Defaults to 0. + scaleUp (bool, optional): Scale up Fuzzy tolerance once get below + 1e-12. Defaults to True. + quadricPY (bool, optional): In openMC python script format, the + cones or cylinders no aligned with the X,Y, or Z axis can be + defined using the openmc.Cone or open.Cylinder methods but can + also be defined with their quadric parameter. If “quadricPY” is + 11 True then all cones and cylinders will be defined in the + openMC python script format under their quadric form. Defaults + to False. + Facets (bool, optional): use alternative conversion module when + geometry is defined by cells compound by only triangular plane + faces. Defaults to False. + prnt3PPlane (bool, optional): print 3 point plane definition in + output as 3 points coordinates. Defaults to False. + forceNoOverlap (bool, optional): force no overlaping cell + definition. Adjacent cell definition are rested from current + cell definition. Defaults to False. + """ + + def __init__( + self, + forceCylinder: bool = False, + newSplitPlane: bool = True, + delLastNumber: bool = False, + enlargeBox: Real = 2.0, + nPlaneReverse: int = 0, + splitTolerance: Real = 0.0, + scaleUp: bool = True, + quadricPY: bool = False, + Facets: bool = False, + prnt3PPlane: bool = False, + forceNoOverlap: bool = False, + ): + + self.forceCylinder = forceCylinder + self.newSplitPlane = newSplitPlane + self.delLastNumber = delLastNumber + self.enlargeBox = enlargeBox + self.nPlaneReverse = nPlaneReverse + self.splitTolerance = splitTolerance + self.scaleUp = scaleUp + self.quadricPY = quadricPY + self.Facets = Facets + self.prnt3PPlane = prnt3PPlane + self.forceNoOverlap = forceNoOverlap + + @property + def forceCylinder(self): + return self._forceCylinder + + @forceCylinder.setter + def forceCylinder(self, value: bool): + if not isinstance(value, bool): + raise TypeError( + f"geouned.Options.forceCylinder should be a bool, not a {type(value)}" + ) + self._forceCylinder = value + + @property + def newSplitPlane(self): + return self._newSplitPlane + + @newSplitPlane.setter + def newSplitPlane(self, value: bool): + if not isinstance(value, bool): + raise TypeError( + f"geouned.Options.newSplitPlane should be a bool, not a {type(value)}" + ) + self._newSplitPlane = value + + @property + def delLastNumber(self): + return self._delLastNumber + + @delLastNumber.setter + def delLastNumber(self, value: bool): + if not isinstance(value, bool): + raise TypeError( + f"geouned.Options.delLastNumber should be a bool, not a {type(value)}" + ) + self._delLastNumber = value + + @property + def enlargeBox(self): + return self._enlargeBox + + @enlargeBox.setter + def enlargeBox(self, value: Real): + if not isinstance(value, Real): + raise TypeError( + f"geouned.Options.enlargeBox should be a Real, not a {type(value)}" + ) + if value < 0: + raise ValueError( + f"geouned.Options.enlargeBox should be above 0, not {value}" + ) + self._enlargeBox = value + + @property + def nPlaneReverse(self): + return self._nPlaneReverse + + @nPlaneReverse.setter + def nPlaneReverse(self, value: int): + if not isinstance(value, int): + raise TypeError( + f"geouned.Options.nPlaneReverse should be a int, not a {type(value)}" + ) + self._nPlaneReverse = value + + @property + def splitTolerance(self): + return self._splitTolerance + + @splitTolerance.setter + def splitTolerance(self, value: Real): + if not isinstance(value, Real): + raise TypeError( + f"geouned.Options.splitTolerance should be a Real, not a {type(value)}" + ) + if value < 0: + raise ValueError( + f"geouned.Options.splitTolerance should be above 0, not {value}" + ) + self._splitTolerance = value + + @property + def scaleUp(self): + return self._scaleUp + + @scaleUp.setter + def scaleUp(self, value: bool): + if not isinstance(value, bool): + raise TypeError( + f"geouned.Options.scaleUp should be a bool, not a {type(value)}" + ) + self._scaleUp = value + + @property + def quadricPY(self): + return self._quadricPY + + @quadricPY.setter + def quadricPY(self, value: bool): + if not isinstance(value, bool): + raise TypeError( + f"geouned.Options.quadricPY should be a bool, not a {type(value)}" + ) + self._quadricPY = value + + @property + def Facets(self): + return self._Facets + + @Facets.setter + def Facets(self, value: bool): + if not isinstance(value, bool): + raise TypeError( + f"geouned.Options.Facets should be a bool, not a {type(value)}" + ) + self._Facets = value + + @property + def prnt3PPlane(self): + return self._prnt3PPlane + + @prnt3PPlane.setter + def prnt3PPlane(self, value: bool): + if not isinstance(value, bool): + raise TypeError( + f"geouned.Options.prnt3PPlane should be a bool, not a {type(value)}" + ) + self._prnt3PPlane = value + + @property + def forceNoOverlap(self): + return self._forceNoOverlap + + @forceNoOverlap.setter + def forceNoOverlap(self, value: bool): + if not isinstance(value, bool): + raise TypeError( + f"geouned.Options.forceNoOverlap should be a bool, not a {type(value)}" + ) + self._forceNoOverlap = value
+ + + +
+[docs] +class Tolerances: + """A class for containing tolerances values + + Args: + relativeTol (bool, optional): _description_. Defaults to False. + relativePrecision (float, optional): relative precision. Defaults to 1.0e-6. + value (float, optional): Tolerance in single value comparison. Defaults to 1.0e-6. + distance (float, optional): General Distance Tolerance. Defaults to 1.0e-4. + angle (float, optional): General Angle Tolerance. Defaults to 1.0e-4. + pln_distance (float, optional): distance between planes equal planes if distance between parallel planes < 1e-4 cm. Defaults to 1.0e-4. + pln_angle (float, optional): angle between axis. 1e-4 : planes separate each other 0.1mm each 1m. Defaults to 1.0e-4. + cyl_distance (float, optional): distance between radius/center. Defaults to 1.0e-4. + cyl_angle (float, optional): angle between axis. Defaults to 1.0e-4. + sph_distance (float, optional): distance between radius/center. Defaults to 1.0e-4. + kne_distance (float, optional): distance between apex. Defaults to 1.0e-4. + kne_angle (float, optional): angle between semiangles/axis. Defaults to 1.0e-4. + tor_distance (float, optional): distance between Major/Minor radii/center. Defaults to 1.0e-4. + tor_angle (float, optional): angle between axis. Defaults to 1.0e-4. + min_area (float, optional): minimum face area to consider in cell definition. Defaults to 1.0e-2. + """ + + def __init__( + self, + relativeTol: bool = False, + relativePrecision: float = 1.0e-6, + value: float = 1.0e-6, + distance: float = 1.0e-4, + angle: float = 1.0e-4, + pln_distance: float = 1.0e-4, + pln_angle: float = 1.0e-4, + cyl_distance: float = 1.0e-4, + cyl_angle: float = 1.0e-4, + sph_distance: float = 1.0e-4, + kne_distance: float = 1.0e-4, + kne_angle: float = 1.0e-4, + tor_distance: float = 1.0e-4, + tor_angle: float = 1.0e-4, + min_area: float = 1.0e-2, + ): + + self.relativeTol = relativeTol + self.relativePrecision = relativePrecision + self.value = value + self.distance = distance + self.angle = angle + self.pln_distance = pln_distance + self.pln_angle = pln_angle + self.cyl_distance = cyl_distance + self.cyl_angle = cyl_angle + self.sph_distance = sph_distance + self.kne_distance = kne_distance + self.kne_angle = kne_angle + self.tor_distance = tor_distance + self.tor_angle = tor_angle + self.min_area = min_area + + @property + def relativeTol(self): + return self._relativeTol + + @relativeTol.setter + def relativeTol(self, value: bool): + if not isinstance(value, bool): + raise TypeError( + f"geouned.Tolerances.relativeTol should be a bool, not a {type(value)}" + ) + self._relativeTol = value + + @property + def relativePrecision(self): + return self._relativePrecision + + @relativePrecision.setter + def relativePrecision(self, value: float): + if not isinstance(value, float): + raise TypeError( + f"geouned.Tolerances.relativePrecision should be a float, not a {type(value)}" + ) + self._relativePrecision = value + + @property + def value(self): + return self._value + + @value.setter + def value(self, value: float): + if not isinstance(value, float): + raise TypeError( + f"geouned.Tolerances.value should be a float, not a {type(value)}" + ) + self._value = value + + @property + def distance(self): + return self._distance + + @distance.setter + def distance(self, distance: float): + if not isinstance(distance, float): + raise TypeError( + f"geouned.Tolerances.distance should be a float, not a {type(distance)}" + ) + self._distance = distance + + @property + def angle(self): + return self._angle + + @angle.setter + def angle(self, angle: float): + if not isinstance(angle, float): + raise TypeError( + f"geouned.Tolerances.angle should be a float, not a {type(angle)}" + ) + self._angle = angle + + @property + def pln_distance(self): + return self._pln_distance + + @pln_distance.setter + def pln_distance(self, pln_distance: float): + if not isinstance(pln_distance, float): + raise TypeError( + f"geouned.Tolerances.pln_distance should be a float, not a {type(pln_distance)}" + ) + self._pln_distance = pln_distance + + @property + def cyl_distance(self): + return self._cyl_distance + + @cyl_distance.setter + def cyl_distance(self, cyl_distance: float): + if not isinstance(cyl_distance, float): + raise TypeError( + f"geouned.Tolerances.cyl_distance should be a float, not a {type(cyl_distance)}" + ) + self._cyl_distance = cyl_distance + + @property + def cyl_angle(self): + return self._cyl_angle + + @cyl_angle.setter + def cyl_angle(self, cyl_angle: float): + if not isinstance(cyl_angle, float): + raise TypeError( + f"geouned.Tolerances.cyl_angle should be a float, not a {type(cyl_angle)}" + ) + self._cyl_angle = cyl_angle + + @property + def sph_distance(self): + return self._sph_distance + + @sph_distance.setter + def sph_distance(self, sph_distance: float): + if not isinstance(sph_distance, float): + raise TypeError( + f"geouned.Tolerances.sph_distance should be a float, not a {type(sph_distance)}" + ) + self._sph_distance = sph_distance + + @property + def pln_angle(self): + return self._pln_angle + + @pln_angle.setter + def pln_angle(self, pln_angle: float): + if not isinstance(pln_angle, float): + raise TypeError( + f"geouned.Tolerances.pln_angle should be a float, not a {type(pln_angle)}" + ) + self._pln_angle = pln_angle + + @property + def kne_distance(self): + return self._kne_distance + + @kne_distance.setter + def kne_distance(self, kne_distance: float): + if not isinstance(kne_distance, float): + raise TypeError( + f"geouned.Tolerances.kne_distance should be a float, not a {type(kne_distance)}" + ) + self._kne_distance = kne_distance + + @property + def kne_angle(self): + return self._kne_angle + + @kne_angle.setter + def kne_angle(self, kne_angle: float): + if not isinstance(kne_angle, float): + raise TypeError( + f"geouned.Tolerances.kne_angle should be a float, not a {type(kne_angle)}" + ) + self._kne_angle = kne_angle + + @property + def tor_distance(self): + return self._tor_distance + + @tor_distance.setter + def tor_distance(self, tor_distance: float): + if not isinstance(tor_distance, float): + raise TypeError( + f"geouned.Tolerances.tor_distance should be a float, not a {type(tor_distance)}" + ) + self._tor_distance = tor_distance + + @property + def tor_angle(self): + return self._tor_angle + + @tor_angle.setter + def tor_angle(self, tor_angle: float): + if not isinstance(tor_angle, float): + raise TypeError( + f"geouned.Tolerances.tor_angle should be a float, not a {type(tor_angle)}" + ) + self._tor_angle = tor_angle + + @property + def min_area(self): + return self._min_area + + @min_area.setter + def min_area(self, min_area: float): + if not isinstance(min_area, float): + raise TypeError( + f"geouned.Tolerances.min_area should be a float, not a {type(min_area)}" + ) + self._min_area = min_area
+ + + +
+[docs] +class NumericFormat: + """Numerical format options for each of the surface types. + + Args: + P_abc (str, optional): Plane general a,b,c params. Defaults to "14.7e". + P_d (str, optional): Plane general d params. Defaults to "14.7e". + P_xyz (str, optional): PX/PY/PZ params. Defaults to "14.7e". + S_r (str, optional): SO/SX/SY/SZ/S radius. Defaults to "14.7e". + S_xyz (str, optional): SO/SX/SY/SZ/S center. Defaults to "14.7e". + C_r (str, optional): Cylinder radius. Defaults to "12f". + C_xyz (str, optional): Cylinder center. Defaults to "12f". + K_xyz (str, optional): Cone apex. Defaults to "13.6e". + K_tan2 (str, optional): Cone tan^2 value. Defaults to "12f". + T_r (str, optional): Torus radii. Defaults to "14.7e". + T_xyz (str, optional): Torus center. Defaults to "14.7e". + GQ_1to6 (str, optional): GQ 1 to 6 coefficients (order 2 x2,y2,z2,xy,...). Defaults to "18.15f". + GQ_7to9 (str, optional): GQ 7 to 9 coefficients (order 1 x,y,z). Defaults to "18.15f". + GQ_10 (str, optional): GQ 10 coefficient. Defaults to "18.15f". + """ + + def __init__( + self, + P_abc: str = "14.7e", + P_d: str = "14.7e", + P_xyz: str = "14.7e", + S_r: str = "14.7e", + S_xyz: str = "14.7e", + C_r: str = "12f", + C_xyz: str = "12f", + K_xyz: str = "13.6e", + K_tan2: str = "12f", + T_r: str = "14.7e", + T_xyz: str = "14.7e", + GQ_1to6: str = "18.15f", + GQ_7to9: str = "18.15f", + GQ_10: str = "18.15f", + ): + + self.P_abc = P_abc + self.P_d = P_d + self.P_xyz = P_xyz + self.S_r = S_r + self.S_xyz = S_xyz + self.C_r = C_r + self.C_xyz = C_xyz + self.K_xyz = K_xyz + self.K_tan2 = K_tan2 + self.T_r = T_r + self.T_xyz = T_xyz + self.GQ_1to6 = GQ_1to6 + self.GQ_7to9 = GQ_7to9 + self.GQ_10 = GQ_10 + + @property + def P_abc(self): + return self._P_abc + + @P_abc.setter + def P_abc(self, P_abc: str): + if not isinstance(P_abc, str): + raise TypeError( + f"geouned.Tolerances.P_abc should be a str, not a {type(P_abc)}" + ) + self._P_abc = P_abc + + @property + def P_d(self): + return self._P_d + + @P_d.setter + def P_d(self, P_d: str): + if not isinstance(P_d, str): + raise TypeError( + f"geouned.Tolerances.P_d should be a str, not a {type(P_d)}" + ) + self._P_d = P_d + + @property + def P_xyz(self): + return self._P_xyz + + @P_xyz.setter + def P_xyz(self, P_xyz: str): + if not isinstance(P_xyz, str): + raise TypeError( + f"geouned.Tolerances.P_xyz should be a str, not a {type(P_xyz)}" + ) + self._P_xyz = P_xyz + + @property + def S_r(self): + return self._S_r + + @S_r.setter + def S_r(self, S_r: str): + if not isinstance(S_r, str): + raise TypeError( + f"geouned.Tolerances.S_r should be a str, not a {type(S_r)}" + ) + self._S_r = S_r + + @property + def S_xyz(self): + return self._S_xyz + + @S_xyz.setter + def S_xyz(self, S_xyz: str): + if not isinstance(S_xyz, str): + raise TypeError( + f"geouned.Tolerances.S_xyz should be a str, not a {type(S_xyz)}" + ) + self._S_xyz = S_xyz + + @property + def C_r(self): + return self._C_r + + @C_r.setter + def C_r(self, C_r: str): + if not isinstance(C_r, str): + raise TypeError( + f"geouned.Tolerances.C_r should be a str, not a {type(C_r)}" + ) + self._C_r = C_r + + @property + def C_xyz(self): + return self._C_xyz + + @C_xyz.setter + def C_xyz(self, C_xyz: str): + if not isinstance(C_xyz, str): + raise TypeError( + f"geouned.Tolerances.C_xyz should be a str, not a {type(C_xyz)}" + ) + self._C_xyz = C_xyz + + @property + def K_xyz(self): + return self._K_xyz + + @K_xyz.setter + def K_xyz(self, K_xyz: str): + if not isinstance(K_xyz, str): + raise TypeError( + f"geouned.Tolerances.K_xyz should be a str, not a {type(K_xyz)}" + ) + self._K_xyz = K_xyz + + @property + def K_tan2(self): + return self._K_tan2 + + @K_tan2.setter + def K_tan2(self, K_tan2: str): + if not isinstance(K_tan2, str): + raise TypeError( + f"geouned.Tolerances.K_tan2 should be a str, not a {type(K_tan2)}" + ) + self._K_tan2 = K_tan2 + + @property + def T_r(self): + return self._T_r + + @T_r.setter + def T_r(self, T_r: str): + if not isinstance(T_r, str): + raise TypeError( + f"geouned.Tolerances.T_r should be a str, not a {type(T_r)}" + ) + self._T_r = T_r + + @property + def T_xyz(self): + return self._T_xyz + + @T_xyz.setter + def T_xyz(self, T_xyz: str): + if not isinstance(T_xyz, str): + raise TypeError( + f"geouned.Tolerances.T_xyz should be a str, not a {type(T_xyz)}" + ) + self._T_xyz = T_xyz + + @property + def GQ_1to6(self): + return self._GQ_1to6 + + @GQ_1to6.setter + def GQ_1to6(self, GQ_1to6: str): + if not isinstance(GQ_1to6, str): + raise TypeError( + f"geouned.Tolerances.GQ_1to6 should be a str, not a {type(GQ_1to6)}" + ) + self._GQ_1to6 = GQ_1to6 + + @property + def GQ_7to9(self): + return self._GQ_7to9 + + @GQ_7to9.setter + def GQ_7to9(self, GQ_7to9: str): + if not isinstance(GQ_7to9, str): + raise TypeError( + f"geouned.Tolerances.GQ_7to9 should be a str, not a {type(GQ_7to9)}" + ) + self._GQ_7to9 = GQ_7to9 + + @property + def GQ_10(self): + return self._GQ_10 + + @GQ_10.setter + def GQ_10(self, GQ_10: str): + if not isinstance(GQ_10, str): + raise TypeError( + f"geouned.Tolerances.GQ_10 should be a str, not a {type(GQ_10)}" + ) + self._GQ_10 = GQ_10
+ + + +
+[docs] +class Settings: + """Settings for changing the way the CAD to CSG conversion is done + + Args: + stepFile (str, optional): Name of the CAD file (in STEP format) to + be converted. Defaults to "". + matFile (str, optional): _description_. Defaults to "". + voidGen (bool, optional): Generate voids of the geometry. Defaults + to True. + debug (bool, optional): Write step files of original and decomposed + solids, for each solid in the STEP file. Defaults to False. + compSolids (bool, optional): Join subsolids of STEP file as a single + compound solid. Step files generated with SpaceClaim have not + exactly the same level of solids as FreeCAD. It may a happened + that solids defined has separated solids are read by FreeCAD + as a single compound solid (and will produce only one MCNP + cell). In this case compSolids should be set to False. Defaults + to True. + simplify (str, optional): Simplify the cell definition considering + relative surfaces position and using Boolean logics. Available + options are: "no" no optimization, "void" only void cells are + simplified. Algorithm is faster but the simplification is not + optimal. "voidfull" : only void cells are simplified with the + most optimal algorithm. The time of the conversion can be + multiplied by 5 or more. "full" : all the cells (solids and + voids) are simplified. Defaults to "No". + cellRange (list, optional): Range of cell to be converted (only one + range is allowed, e.g [100,220]). Default all solids are + converted. Defaults to []. + exportSolids (str, optional): Export CAD solid after reading. + The execution is stopped after export, the translation is not + carried out. Defaults to "". + minVoidSize (float, optional): Minimum size of the edges of the + void cell. Units are in mm. Defaults to 200.0. + maxSurf (int, optional): #TODO + maxBracket (int, optional): Maximum number of brackets (solid + complementary) allowed in void cell definition. Defaults to 30. + voidMat (list, optional): Assign a material defined by the user + instead of void for cells without material definition and the + cells generated in the automatic void generation. The format + is a 3 valued tuple (mat_label, mat_density, mat_description). + Example (100,1e-3,'Air assigned to Void'). Defaults to []. + voidExclude (list, optional): #TODO see issue 87. Defaults to []. + startCell (int, optional): Starting cell numbering label. Defaults to 1. + startSurf (int, optional): Starting surface numbering label. Defaults to 1. + sort_enclosure (bool, optional): If enclosures are defined in the + CAD models, the voids cells of the enclosure will be located in + the output file in the same location where the enclosure solid + is located in the CAD solid tree.. Defaults to False. + """ + + def __init__( + self, + matFile: str = "", + voidGen: bool = True, + debug: bool = False, + compSolids: bool = True, + simplify: str = "no", + cellRange: list = [], + exportSolids: str = "", + minVoidSize: float = 200.0, # units mm + maxSurf: int = 50, + maxBracket: int = 30, + voidMat: list = [], + voidExclude: list = [], + startCell: int = 1, + startSurf: int = 1, + sort_enclosure: bool = False, + ): + + self.matFile = matFile + self.voidGen = voidGen + self.debug = debug + self.compSolids = compSolids + self.simplify = simplify + self.cellRange = cellRange + self.exportSolids = exportSolids + self.minVoidSize = minVoidSize + self.maxSurf = maxSurf + self.maxBracket = maxBracket + self.voidMat = voidMat + self.voidExclude = voidExclude + self.startCell = startCell + self.startSurf = startSurf + self.sort_enclosure = sort_enclosure + + @property + def matFile(self): + return self._matFile + + @matFile.setter + def matFile(self, matFile: str): + if not isinstance(matFile, str): + raise TypeError( + f"geouned.Tolerances.matFile should be a str, not a {type(matFile)}" + ) + self._matFile = matFile + + @property + def voidGen(self): + return self._voidGen + + @voidGen.setter + def voidGen(self, voidGen: bool): + if not isinstance(voidGen, bool): + raise TypeError( + f"geouned.Tolerances.voidGen should be a bool, not a {type(voidGen)}" + ) + self._voidGen = voidGen + + @property + def debug(self): + return self._debug + + @debug.setter + def debug(self, debug: bool): + if not isinstance(debug, bool): + raise TypeError( + f"geouned.Tolerances.debug should be a bool, not a {type(debug)}" + ) + self._debug = debug + + @property + def compSolids(self): + return self._compSolids + + @compSolids.setter + def compSolids(self, compSolids: bool): + if not isinstance(compSolids, bool): + raise TypeError( + f"geouned.Tolerances.compSolids should be a bool, not a {type(compSolids)}" + ) + self._compSolids = compSolids + + @property + def simplify(self): + return self._simplify + + @simplify.setter + def simplify(self, simplify: str): + if not isinstance(simplify, str): + raise TypeError( + f"geouned.Tolerances.simplify should be a str, not a {type(simplify)}" + ) + self._simplify = simplify + + @property + def cellRange(self): + return self._cellRange + + @cellRange.setter + def cellRange(self, cellRange: list): + if not isinstance(cellRange, list): + raise TypeError( + f"geouned.Tolerances.cellRange should be a list, not a {type(cellRange)}" + ) + for entry in cellRange: + if not isinstance(entry, int): + raise TypeError( + f"geouned.Tolerances.cellRange should be a list of ints, not a {type(entry)}" + ) + self._cellRange = cellRange + + @property + def exportSolids(self): + return self._exportSolids + + @exportSolids.setter + def exportSolids(self, exportSolids: str): + if not isinstance(exportSolids, str): + raise TypeError( + f"geouned.Tolerances.exportSolids should be a str, not a {type(exportSolids)}" + ) + self._exportSolids = exportSolids + + @property + def minVoidSize(self): + return self._minVoidSize + + @minVoidSize.setter + def minVoidSize(self, minVoidSize: float): + if not isinstance(minVoidSize, float): + raise TypeError( + f"geouned.Tolerances.minVoidSize should be a float, not a {type(minVoidSize)}" + ) + self._minVoidSize = minVoidSize + + @property + def maxSurf(self): + return self._maxSurf + + @maxSurf.setter + def maxSurf(self, maxSurf: int): + if not isinstance(maxSurf, int): + raise TypeError( + f"geouned.Tolerances.maxSurf should be a int, not a {type(maxSurf)}" + ) + self._maxSurf = maxSurf + + @property + def maxBracket(self): + return self._maxBracket + + @maxBracket.setter + def maxBracket(self, maxBracket: int): + if not isinstance(maxBracket, int): + raise TypeError( + f"geouned.Tolerances.maxBracket should be a int, not a {type(maxBracket)}" + ) + self._maxBracket = maxBracket + + @property + def voidMat(self): + return self._voidMat + + @voidMat.setter + def voidMat(self, voidMat: list): + if not isinstance(voidMat, list): + raise TypeError( + f"geouned.Tolerances.voidMat should be a list, not a {type(voidMat)}" + ) + for entry in voidMat: + if not isinstance(entry, int): + raise TypeError( + f"geouned.Tolerances.voidMat should be a list of ints, not a {type(entry)}" + ) + self._voidMat = voidMat + + @property + def voidExclude(self): + return self._voidExclude + + @voidExclude.setter + def voidExclude(self, voidExclude: list): + if not isinstance(voidExclude, list): + raise TypeError( + f"geouned.Tolerances.voidExclude should be a list, not a {type(voidExclude)}" + ) + for entry in voidExclude: + if not isinstance(entry, int): + raise TypeError( + f"geouned.Tolerances.voidExclude should be a list of ints, not a {type(entry)}" + ) + self._voidExclude = voidExclude + + @property + def startCell(self): + return self._startCell + + @startCell.setter + def startCell(self, startCell: int): + if not isinstance(startCell, int): + raise TypeError( + f"geouned.Tolerances.startCell should be a int, not a {type(startCell)}" + ) + self._startCell = startCell + + @property + def startSurf(self): + return self._startSurf + + @startSurf.setter + def startSurf(self, startSurf: int): + if not isinstance(startSurf, int): + raise TypeError( + f"geouned.Tolerances.startSurf should be a int, not a {type(startSurf)}" + ) + self._startSurf = startSurf + + @property + def sort_enclosure(self): + return self._sort_enclosure + + @sort_enclosure.setter + def sort_enclosure(self, sort_enclosure: bool): + if not isinstance(sort_enclosure, bool): + raise TypeError( + f"geouned.Tolerances.sort_enclosure should be a bool, not a {type(sort_enclosure)}" + ) + self._sort_enclosure = sort_enclosure
+ +
+ +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/_modules/index.html b/_modules/index.html new file mode 100644 index 00000000..968c8a27 --- /dev/null +++ b/_modules/index.html @@ -0,0 +1,107 @@ + + + + + + Overview: module code — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + +
+ + +
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+ +

All modules for which code is available

+ + +
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+
+ + + + \ No newline at end of file diff --git a/_sources/developer_guide.rst.txt b/_sources/developer_guide.rst.txt new file mode 100644 index 00000000..555da6f9 --- /dev/null +++ b/_sources/developer_guide.rst.txt @@ -0,0 +1,4 @@ +Developer guide +=============== + +TOOD \ No newline at end of file diff --git a/_sources/index.rst.txt b/_sources/index.rst.txt new file mode 100644 index 00000000..f55bdbdb --- /dev/null +++ b/_sources/index.rst.txt @@ -0,0 +1,20 @@ +.. GEOUNED documentation master file, created by + sphinx-quickstart on Tue Apr 30 09:47:11 2024. + You can adapt this file completely to your liking, but it should at least + contain the root `toctree` directive. + +GEOUNED +======= + +GEOUNED converts CAD to Constructive Solid Geometry (CSG) formats for use in +Monte Carlo transport codes. +Supported codes include OpenMC, PHITS, Serpent and MCNP. + +.. toctree:: + :maxdepth: 3 + + install + usage/index + python_api + methodology + developer_guide diff --git a/_sources/install.rst.txt b/_sources/install.rst.txt new file mode 100644 index 00000000..9601d562 --- /dev/null +++ b/_sources/install.rst.txt @@ -0,0 +1,264 @@ +Install +======= + +There are several options for installing GEOUNED package. +The installation selected has implications for how you run GEOUNED Python scripts. +Currently the Mamba / Conda install is the recommended method. +The main complication when installing GEOUNED is integration between the main dependency (FreeCAD) and the users system Python. +Mamba / Conda provides the a connection between the FreeCAD Python library and your system Python. +Users have had success installing FreeCAD and making use of the Python version inbuilt into FreeCAD +.. TODO as well so these installation methods are listed for completeness. + + +Linux +----- + +User install with Mamba (recommended) +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +First we need to install a Mamba distribution. There are a few options but here we opt for Miniforge3 as it includes Mamba. + +You can follow the install instructions for `Miniforge3 here `_ or follows the commands below. +Download + +.. code-block:: sh + + curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh" + bash Miniforge3-$(uname)-$(uname -m).sh + +Install Miniforge3 + +.. code-block:: sh + + bash Miniforge3-Linux-x86_64.sh + + +Activate the base environment in your current terminal + +.. code-block:: sh + + mamba activate + + +It is recommended to create a new environment + +.. code-block:: sh + + mamba create --name new_new python=3.11 + + +Activate the new environment + +.. code-block:: sh + + mamba activate new_new + +We have aspirations to create a conda-forge package which will combine these final two steps, but for now FreeCAD and GEOUNED can be installed in two commands. +Install FreeCAD which is the main dependency + +.. code-block:: sh + + mamba install -c conda-forge freecad + + +Install GEOUNED with pip, we also prefix this with "python -m" to ensure that pip install uses the correct Python interpreter. + +.. code-block:: sh + + python -m pip install git+https://github.com/GEOUNED-code/GEOUNED.git + +Then you will be able to run import GEOUNED from within Python + +.. code-block:: python + + import geouned + + +User install with Conda +~~~~~~~~~~~~~~~~~~~~~~~ + +First we need to install a Conda distribution. There are a few options but we here we opt for `MiniConda3 `_ as it downloads quicker than the fuller `AnaConda `_. + +You can follow the install instructions for `MiniConda3 `_ or follow the commands below. +Download. + +.. code-block:: sh + + mkdir -p ~/miniconda3 + wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh + +Install MiniConda3 + +.. code-block:: sh + + bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3 + + +Activate the base environment in your current terminal + +.. code-block:: sh + + ~/miniconda3/bin/conda init bash + + +It is recommended to create a new environment + +.. code-block:: sh + + conda create --name new_new python=3.11 + + +Activate the new environment + +.. code-block:: sh + + conda activate new_new + +We have aspirations to create a conda-forge package which will combine these final two steps, but for now FreeCAD and GEOUNED can be installed in two commands. +Install FreeCAD which is the main dependency + +.. code-block:: sh + + conda install -c conda-forge freecad + + +Install GEOUNED with pip, we also prefix this with "python -m" to ensure that pip install uses the correct Python interpreter. + +.. code-block:: sh + + python -m pip install git+https://github.com/GEOUNED-code/GEOUNED.git + +Then you will be able to run import GEOUNED from within Python + +.. code-block:: python + + import geouned + + + + +Developer install with Mamba +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +First we need to install a Mamba distribution. There are a few options but here we opt for Miniforge3 as it includes Mamba. + +You can follow the install instructions for `Miniforge3 here `_ or follows the commands below. +Download + +.. code-block:: sh + + curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh" + bash Miniforge3-$(uname)-$(uname -m).sh + +Install Miniforge3 + +.. code-block:: sh + + bash Miniforge3-Linux-x86_64.sh + + +Activate the base environment in your current terminal + +.. code-block:: sh + + mamba activate + + +It is recommended to create a new environment + +.. code-block:: sh + + mamba create --name new_new python=3.11 + + +Activate the new environment + +.. code-block:: sh + + mamba activate new_new + +We have aspirations to create a conda-forge package which will combine these final two steps, but for now FreeCAD and GEOUNED can be installed in two commands. +Install FreeCAD which is the main dependency + +.. code-block:: sh + + mamba install -c conda-forge freecad + +Fork the GEOUNED-org/GEOUNED repository by clicking this link, unchecking the Copy the main branch only check box and clicking create fork + +`https://github.com/GEOUNED-org/GEOUNED/fork `_ + +Assuming that you have `setup `_ and `added `_ SSH keys then we can clone your forked GEOUNED repository. +Replace with your own github username + +.. code-block:: sh + + git clone git@github.com:/GEOUNED.git + +Then change directory into the repository root like this + +.. code-block:: sh + + cd GEOUNED + +Install GEOUNED with pip, we also prefix this with "python -m" to ensure that pip install uses the correct Python interpreter. +We are also adding the -e to get an editable install so that when you make local changes to the repo these are picked up in your Python scripts straight away (without needing to reinstall). +We also include all the optional dependencies so that we can run tests locally and build the docs locally. + +.. code-block:: sh + + python -m pip install -e .[tests,docs] + +Then you will be able to run import GEOUNED from within Python + +.. code-block:: python + + import geouned + +Checkout feature branches from dev and make local changes on you own branch + +.. code-block:: sh + + git checkout dev + git checkout -b 'my_new_feature' + +Pull requests are welcome + +.. Apt-get +.. ~~~~~~~ + +.. Snap +.. ~~~~ + +.. AppImage +.. ~~~~~~~~ + +.. Mac +.. --- + + +.. Mamba +.. ~~~~~ + +.. Conda +.. ~~~~~ + +.. Brew +.. ~~~~ + + +.. Windows +.. ------- + +.. Mamba +.. ~~~~~ + +.. Conda +.. ~~~~~ + +.. Portable FreeCAD installer +.. ~~~~~~~~~~~~~~~~~~~~~~~~~~ + +.. Windows Subsystem for Linux (WSL) +.. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + diff --git a/_sources/methodology.rst.txt b/_sources/methodology.rst.txt new file mode 100644 index 00000000..78fc03f8 --- /dev/null +++ b/_sources/methodology.rst.txt @@ -0,0 +1,13 @@ +Methodology +=========== + + +There are several documents on the methodology of GEOUNED + +`Publication `_ + +`User_Guide_GEOUNED_v2.0.pdf `_ + +`Training_on_GEOUNED_tool `_ + +TODO convert various data sources to rst format for these docs diff --git a/_sources/python_api.rst.txt b/_sources/python_api.rst.txt new file mode 100644 index 00000000..12fa2c9e --- /dev/null +++ b/_sources/python_api.rst.txt @@ -0,0 +1,25 @@ +Python API reference +==================== + + +.. currentmodule:: geouned + +.. autoclass:: CadToCsg + :members: + :show-inheritance: + +.. autoclass:: NumericFormat + :members: + :show-inheritance: + +.. autoclass:: Options + :members: + :show-inheritance: + +.. autoclass:: Settings + :members: + :show-inheritance: + +.. autoclass:: Tolerances + :members: + :show-inheritance: diff --git a/_sources/usage/index.rst.txt b/_sources/usage/index.rst.txt new file mode 100644 index 00000000..97282c13 --- /dev/null +++ b/_sources/usage/index.rst.txt @@ -0,0 +1,14 @@ +.. usage + +Usage +===== + +GEOUNED can be used as a Python package with the API or as a command line tool with the CLI. + + +.. toctree:: + :numbered: + :maxdepth: 1 + + python_api_usage + python_cli_usage \ No newline at end of file diff --git a/_sources/usage/python_api_usage.rst.txt b/_sources/usage/python_api_usage.rst.txt new file mode 100644 index 00000000..2fcc3643 --- /dev/null +++ b/_sources/usage/python_api_usage.rst.txt @@ -0,0 +1,119 @@ +Python Package Usage +==================== + +The Python API has two main classes. +The first main class is ``CadToCsg()`` which converts CAD geometry to Constructive Solid Geometry (CSG). +There are many arguments that can be passed into the ``CadToCsg()`` class which are documented in the `Python API reference section <../python_api.html>`_ of the documentation. + + +If you have install GEOUNED and FreeCAD into your system Python then you can simply run a .py script with Python. +The most minimal use case below shows GEOUNED being imported and the CadToCsg being used to convert a STEP CAD file called 'cuboid.stp' into a vanity of CSG format. +The example makes use of default attributes. + +.. code-block:: python + + import geouned + geo = geouned.CadToCsg(stepFile='cuboid.stp') + geo.start() + geo.export_csg() + +Users can change :meth:`geouned.Options`, :meth:`geouned.Settings`, :meth:`geouned.Tolerances` and :meth:`geouned.NumericFormat` to suit the conversion desired. +The following example shows a usage with every attributes specified. + +.. code-block:: python + + import geouned + + my_options = geouned.Options( + forceCylinder=False, + newSplitPlane=True, + delLastNumber=False, + enlargeBox=2, + nPlaneReverse=0, + splitTolerance=0, + scaleUp=True, + quadricPY=False, + Facets=False, + prnt3PPlane=False, + forceNoOverlap=False, + ) + + my_settings = geouned.Settings( + matFile="", + voidGen=True, + debug=False, + compSolids=True, + simplify="no", + cellRange=[], + exportSolids="", + minVoidSize=200.0, + maxSurf=50, + maxBracket=30, + voidMat=[], + voidExclude=[], + startCell=1, + startSurf=1, + sort_enclosure=False, + ) + + my_tolerances = geouned.Tolerances( + relativeTol=False, + relativePrecision=0.000001, + value=0.000001, + distance=0.0001, + angle=0.0001, + pln_distance=0.0001, + pln_angle=0.0001, + cyl_distance=0.0001, + cyl_angle=0.0001, + sph_distance=0.0001, + kne_distance=0.0001, + kne_angle=0.0001, + tor_distance=0.0001, + tor_angle=0.0001, + min_area=0.01, + ) + my_numeric_format = geouned.NumericFormat( + P_abc="14.7e", + P_d="14.7e", + P_xyz="14.7e", + S_r="14.7e", + S_xyz="14.7e", + C_r="12f", + C_xyz="12f", + K_xyz="13.6e", + K_tan2="12f", + T_r="14.7e", + T_xyz="14.7e", + GQ_1to6="18.15f", + GQ_7to9="18.15f", + GQ_10="18.15f", + ) + + geo = geouned.CadToCsg( + stepFile="cuboid.stp, + options=my_options, + settings=my_settings, + tolerances=my_tolerances, + numeric_format=my_numeric_format, + ) + + geo.start() + + geo.export_csg( + title="Converted with GEOUNED", + geometryName="csg", + outFormat=( + "openMC_XML", + "openMC_PY", + "serpent", + "phits", + "mcnp", + ), + volSDEF=True, + volCARD=False, + UCARD=None, + dummyMat=True, + cellCommentFile=False, + cellSummaryFile=False, + ) diff --git a/_sources/usage/python_cli_usage.rst.txt b/_sources/usage/python_cli_usage.rst.txt new file mode 100644 index 00000000..ca0e790c --- /dev/null +++ b/_sources/usage/python_cli_usage.rst.txt @@ -0,0 +1,115 @@ +Command Line Tool Usage +======================= + +GEOUNED can be used in the command line. + +These examples assumes you have a CAD STEP file in the current working directory of the terminal called "cuboid.stp" + +The most minimal use case below shows a minimal config.json file being used. + +First create a JSON file called "config.json" containing the following. + +.. code-block:: json + + { + "stepFile": "cuboid.stp" + } + +Then execute the command line interface tool to convert your STEP file to CSG files with the default configuration. + +.. code-block:: bash + + geouned_cadtocsg -i config.json + +The following example shows a usage with every attributes specified in the config.json file. + +The contents of the JSON file closely matches the Class arguments and method arguments when using the Python package. + +For a full description of each keyword see the `Python API reference section <../python_api.html>`_ of the documentation. + +Here is a complete JSON file specification + +.. code-block:: json + + { + "stepFile": "cuboid.stp", + "Options": { + "forceCylinder": false, + "newSplitPlane": true, + "delLastNumber": false, + "enlargeBox": 2.0, + "nPlaneReverse": 0, + "splitTolerance": 0.0, + "scaleUp": true, + "quadricPY": false, + "Facets": false, + "prnt3PPlane": false, + "forceNoOverlap": false + }, + "Tolerances": { + "relativeTol": false, + "relativePrecision": 1e-06, + "value": 1e-06, + "distance": 0.0001, + "angle": 0.0001, + "pln_distance": 0.0001, + "pln_angle": 0.0001, + "cyl_distance": 0.0001, + "cyl_angle": 0.0001, + "sph_distance": 0.0001, + "kne_distance": 0.0001, + "kne_angle": 0.0001, + "tor_distance": 0.0001, + "tor_angle": 0.0001, + "min_area": 0.01 + }, + "NumericFormat": { + "P_abc": "14.7e", + "P_d": "14.7e", + "P_xyz": "14.7e", + "S_r": "14.7e", + "S_xyz": "14.7e", + "C_r": "12f", + "C_xyz": "12f", + "K_xyz": "13.6e", + "K_tan2": "12f", + "T_r": "14.7e", + "T_xyz": "14.7e", + "GQ_1to6": "18.15f", + "GQ_7to9": "18.15f", + "GQ_10": "18.15f" + }, + "Settings": { + "matFile": "", + "voidGen": true, + "debug": false, + "compSolids": true, + "simplify": "no", + "cellRange": [], + "exportSolids": "", + "minVoidSize": 200.0, + "maxSurf": 50, + "maxBracket": 30, + "voidMat": [], + "voidExclude": [], + "startCell": 1, + "startSurf": 1, + "sort_enclosure": false + }, + "export_csg":{ + "title": "Converted with GEOUNED", + "geometryName": "csg", + "outFormat": ["openMC_XML", "openMC_PY", "serpent", "phits", "mcnp"], + "volSDEF": false, + "volCARD": true, + "dummyMat": false, + "cellCommentFile": false, + "cellSummaryFile": true + } + } + +This is converted in the same way as the minimal JSON config file + +.. code-block:: bash + + geouned_cadtocsg -i config.json diff --git a/_static/_sphinx_javascript_frameworks_compat.js b/_static/_sphinx_javascript_frameworks_compat.js new file mode 100644 index 00000000..81415803 --- /dev/null +++ b/_static/_sphinx_javascript_frameworks_compat.js @@ -0,0 +1,123 @@ +/* Compatability shim for jQuery and underscores.js. + * + * Copyright Sphinx contributors + * Released under the two clause BSD licence + */ + +/** + * small helper function to urldecode strings + * + * See 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+ +/** + * Simple result scoring code. + */ +if (typeof Scorer === "undefined") { + var Scorer = { + // Implement the following function to further tweak the score for each result + // The function takes a result array [docname, title, anchor, descr, score, filename] + // and returns the new score. + /* + score: result => { + const [docname, title, anchor, descr, score, filename] = result + return score + }, + */ + + // query matches the full name of an object + objNameMatch: 11, + // or matches in the last dotted part of the object name + objPartialMatch: 6, + // Additive scores depending on the priority of the object + objPrio: { + 0: 15, // used to be importantResults + 1: 5, // used to be objectResults + 2: -5, // used to be unimportantResults + }, + // Used when the priority is not in the mapping. + objPrioDefault: 0, + + // query found in title + title: 15, + partialTitle: 7, + // query found in terms + term: 5, + partialTerm: 2, + }; +} + +const _removeChildren = (element) => { + while (element && element.lastChild) element.removeChild(element.lastChild); +}; + +/** + * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping + */ +const _escapeRegExp = (string) => + string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string + +const _displayItem = (item, searchTerms, highlightTerms) => { + const docBuilder = DOCUMENTATION_OPTIONS.BUILDER; + const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX; + const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX; + const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY; + const contentRoot = document.documentElement.dataset.content_root; + + const [docName, title, anchor, descr, score, _filename] = item; + + let listItem = document.createElement("li"); + let requestUrl; + let linkUrl; + if (docBuilder === "dirhtml") { + // dirhtml builder + let dirname = docName + "/"; + if (dirname.match(/\/index\/$/)) + dirname = dirname.substring(0, dirname.length - 6); + else if (dirname === "index/") dirname = ""; + requestUrl = contentRoot + dirname; + linkUrl = requestUrl; + } else { + // normal html builders + requestUrl = contentRoot + docName + docFileSuffix; + linkUrl = docName + docLinkSuffix; + } + let linkEl = listItem.appendChild(document.createElement("a")); + linkEl.href = linkUrl + anchor; + linkEl.dataset.score = score; + linkEl.innerHTML = title; + if (descr) { + listItem.appendChild(document.createElement("span")).innerHTML = + " (" + descr + ")"; + // highlight search terms in the description + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + } + else if (showSearchSummary) + fetch(requestUrl) + .then((responseData) => responseData.text()) + .then((data) => { + if (data) + listItem.appendChild( + Search.makeSearchSummary(data, searchTerms, anchor) + ); + // highlight search terms in the summary + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + }); + Search.output.appendChild(listItem); +}; +const _finishSearch = (resultCount) => { + Search.stopPulse(); + Search.title.innerText = _("Search Results"); + if (!resultCount) + Search.status.innerText = Documentation.gettext( + "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories." + ); + else + Search.status.innerText = _( + "Search finished, found ${resultCount} page(s) matching the search query." + ).replace('${resultCount}', resultCount); +}; +const _displayNextItem = ( + results, + resultCount, + searchTerms, + highlightTerms, +) => { + // results left, load the summary and display it + // this is intended to be dynamic (don't sub resultsCount) + if (results.length) { + _displayItem(results.pop(), searchTerms, highlightTerms); + setTimeout( + () => _displayNextItem(results, resultCount, searchTerms, highlightTerms), + 5 + ); + } + // search finished, update title and status message + else _finishSearch(resultCount); +}; +// Helper function used by query() to order search results. +// Each input is an array of [docname, title, anchor, descr, score, filename]. +// Order the results by score (in opposite order of appearance, since the +// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically. +const _orderResultsByScoreThenName = (a, b) => { + const leftScore = a[4]; + const rightScore = b[4]; + if (leftScore === rightScore) { + // same score: sort alphabetically + const leftTitle = a[1].toLowerCase(); + const rightTitle = b[1].toLowerCase(); + if (leftTitle === rightTitle) return 0; + return leftTitle > rightTitle ? -1 : 1; // inverted is intentional + } + return leftScore > rightScore ? 1 : -1; +}; + +/** + * Default splitQuery function. Can be overridden in ``sphinx.search`` with a + * custom function per language. + * + * The regular expression works by splitting the string on consecutive characters + * that are not Unicode letters, numbers, underscores, or emoji characters. + * This is the same as ``\W+`` in Python, preserving the surrogate pair area. + */ +if (typeof splitQuery === "undefined") { + var splitQuery = (query) => query + .split(/[^\p{Letter}\p{Number}_\p{Emoji_Presentation}]+/gu) + .filter(term => term) // remove remaining empty strings +} + +/** + * Search Module + */ +const Search = { + _index: null, + _queued_query: null, + _pulse_status: -1, + + htmlToText: (htmlString, anchor) => { + const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); + for (const removalQuery of [".headerlinks", "script", "style"]) { + htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() }); + } + if (anchor) { + const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`); + if (anchorContent) return anchorContent.textContent; + + console.warn( + `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.` + ); + } + + // if anchor not specified or not found, fall back to main content + const docContent = htmlElement.querySelector('[role="main"]'); + if (docContent) return docContent.textContent; + + console.warn( + "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template." + ); + return ""; + }, + + init: () => { + const query = new URLSearchParams(window.location.search).get("q"); + document + .querySelectorAll('input[name="q"]') + .forEach((el) => (el.value = query)); + if (query) Search.performSearch(query); + }, + + loadIndex: (url) => + (document.body.appendChild(document.createElement("script")).src = url), + + setIndex: (index) => { + Search._index = index; + if (Search._queued_query !== null) { + const query = Search._queued_query; + Search._queued_query = null; + Search.query(query); + } + }, + + hasIndex: () => Search._index !== null, + + deferQuery: (query) => (Search._queued_query = query), + + stopPulse: () => (Search._pulse_status = -1), + + startPulse: () => { + if (Search._pulse_status >= 0) return; + + const pulse = () => { + Search._pulse_status = (Search._pulse_status + 1) % 4; + Search.dots.innerText = ".".repeat(Search._pulse_status); + if (Search._pulse_status >= 0) window.setTimeout(pulse, 500); + }; + pulse(); + }, + + /** + * perform a search for something (or wait until index is loaded) + */ + performSearch: (query) => { + // create the required interface elements + const searchText = document.createElement("h2"); + searchText.textContent = _("Searching"); + const searchSummary = document.createElement("p"); + searchSummary.classList.add("search-summary"); + searchSummary.innerText = ""; + const searchList = document.createElement("ul"); + searchList.classList.add("search"); + + const out = document.getElementById("search-results"); + Search.title = out.appendChild(searchText); + Search.dots = Search.title.appendChild(document.createElement("span")); + Search.status = out.appendChild(searchSummary); + Search.output = out.appendChild(searchList); + + const searchProgress = document.getElementById("search-progress"); + // Some themes don't use the search progress node + if (searchProgress) { + searchProgress.innerText = _("Preparing search..."); + } + Search.startPulse(); + + // index already loaded, the browser was quick! + if (Search.hasIndex()) Search.query(query); + else Search.deferQuery(query); + }, + + _parseQuery: (query) => { + // stem the search terms and add them to the correct list + const stemmer = new Stemmer(); + const searchTerms = new Set(); + const excludedTerms = new Set(); + const highlightTerms = new Set(); + const objectTerms = new Set(splitQuery(query.toLowerCase().trim())); + splitQuery(query.trim()).forEach((queryTerm) => { + const queryTermLower = queryTerm.toLowerCase(); + + // maybe skip this "word" + // stopwords array is from language_data.js + if ( + stopwords.indexOf(queryTermLower) !== -1 || + queryTerm.match(/^\d+$/) + ) + return; + + // stem the word + let word = stemmer.stemWord(queryTermLower); + // select the correct list + if (word[0] === "-") excludedTerms.add(word.substr(1)); + else { + searchTerms.add(word); + highlightTerms.add(queryTermLower); + } + }); + + if (SPHINX_HIGHLIGHT_ENABLED) { // set in sphinx_highlight.js + localStorage.setItem("sphinx_highlight_terms", [...highlightTerms].join(" ")) + } + + // console.debug("SEARCH: searching for:"); + // console.info("required: ", [...searchTerms]); + // console.info("excluded: ", [...excludedTerms]); + + return [query, searchTerms, excludedTerms, highlightTerms, objectTerms]; + }, + + /** + * execute search (requires search index to be loaded) + */ + _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + const allTitles = Search._index.alltitles; + const indexEntries = Search._index.indexentries; + + // Collect multiple result groups to be sorted separately and then ordered. + // Each is an array of [docname, title, anchor, descr, score, filename]. + const normalResults = []; + const nonMainIndexResults = []; + + _removeChildren(document.getElementById("search-progress")); + + const queryLower = query.toLowerCase().trim(); + for (const [title, foundTitles] of Object.entries(allTitles)) { + if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) { + for (const [file, id] of foundTitles) { + let score = Math.round(100 * queryLower.length / title.length) + normalResults.push([ + docNames[file], + titles[file] !== title ? `${titles[file]} > ${title}` : title, + id !== null ? "#" + id : "", + null, + score, + filenames[file], + ]); + } + } + } + + // search for explicit entries in index directives + for (const [entry, foundEntries] of Object.entries(indexEntries)) { + if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) { + for (const [file, id, isMain] of foundEntries) { + const score = Math.round(100 * queryLower.length / entry.length); + const result = [ + docNames[file], + titles[file], + id ? "#" + id : "", + null, + score, + filenames[file], + ]; + if (isMain) { + normalResults.push(result); + } else { + nonMainIndexResults.push(result); + } + } + } + } + + // lookup as object + objectTerms.forEach((term) => + normalResults.push(...Search.performObjectSearch(term, objectTerms)) + ); + + // lookup as search terms in fulltext + normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms)); + + // let the scorer override scores with a custom scoring function + if (Scorer.score) { + normalResults.forEach((item) => (item[4] = Scorer.score(item))); + nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item))); + } + + // Sort each group of results by score and then alphabetically by name. + normalResults.sort(_orderResultsByScoreThenName); + nonMainIndexResults.sort(_orderResultsByScoreThenName); + + // Combine the result groups in (reverse) order. + // Non-main index entries are typically arbitrary cross-references, + // so display them after other results. + let results = [...nonMainIndexResults, ...normalResults]; + + // remove duplicate search results + // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept + let seen = new Set(); + results = results.reverse().reduce((acc, result) => { + let resultStr = result.slice(0, 4).concat([result[5]]).map(v => String(v)).join(','); + if (!seen.has(resultStr)) { + acc.push(result); + seen.add(resultStr); + } + return acc; + }, []); + + return results.reverse(); + }, + + query: (query) => { + const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query); + const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms); + + // for debugging + //Search.lastresults = results.slice(); // a copy + // console.info("search results:", Search.lastresults); + + // print the results + _displayNextItem(results, results.length, searchTerms, highlightTerms); + }, + + /** + * search for object names + */ + performObjectSearch: (object, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const objects = Search._index.objects; + const objNames = Search._index.objnames; + const titles = Search._index.titles; + + const results = []; + + const objectSearchCallback = (prefix, match) => { + const name = match[4] + const fullname = (prefix ? prefix + "." : "") + name; + const fullnameLower = fullname.toLowerCase(); + if (fullnameLower.indexOf(object) < 0) return; + + let score = 0; + const parts = fullnameLower.split("."); + + // check for different match types: exact matches of full name or + // "last name" (i.e. last dotted part) + if (fullnameLower === object || parts.slice(-1)[0] === object) + score += Scorer.objNameMatch; + else if (parts.slice(-1)[0].indexOf(object) > -1) + score += Scorer.objPartialMatch; // matches in last name + + const objName = objNames[match[1]][2]; + const title = titles[match[0]]; + + // If more than one term searched for, we require other words to be + // found in the name/title/description + const otherTerms = new Set(objectTerms); + otherTerms.delete(object); + if (otherTerms.size > 0) { + const haystack = `${prefix} ${name} ${objName} ${title}`.toLowerCase(); + if ( + [...otherTerms].some((otherTerm) => haystack.indexOf(otherTerm) < 0) + ) + return; + } + + let anchor = match[3]; + if (anchor === "") anchor = fullname; + else if (anchor === "-") anchor = objNames[match[1]][1] + "-" + fullname; + + const descr = objName + _(", in ") + title; + + // add custom score for some objects according to scorer + if (Scorer.objPrio.hasOwnProperty(match[2])) + score += Scorer.objPrio[match[2]]; + else score += Scorer.objPrioDefault; + + results.push([ + docNames[match[0]], + fullname, + "#" + anchor, + descr, + score, + filenames[match[0]], + ]); + }; + Object.keys(objects).forEach((prefix) => + objects[prefix].forEach((array) => + objectSearchCallback(prefix, array) + ) + ); + return results; + }, + + /** + * search for full-text terms in the index + */ + performTermsSearch: (searchTerms, excludedTerms) => { + // prepare search + const terms = Search._index.terms; + const titleTerms = Search._index.titleterms; + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + + const scoreMap = new Map(); + const fileMap = new Map(); + + // perform the search on the required terms + searchTerms.forEach((word) => { + const files = []; + const arr = [ + { files: terms[word], score: Scorer.term }, + { files: titleTerms[word], score: Scorer.title }, + ]; + // add support for partial matches + if (word.length > 2) { + const escapedWord = _escapeRegExp(word); + if (!terms.hasOwnProperty(word)) { + Object.keys(terms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: terms[term], score: Scorer.partialTerm }); + }); + } + if (!titleTerms.hasOwnProperty(word)) { + Object.keys(titleTerms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: titleTerms[term], score: Scorer.partialTitle }); + }); + } + } + + // no match but word was a required one + if (arr.every((record) => record.files === undefined)) return; + + // found search word in contents + arr.forEach((record) => { + if (record.files === undefined) return; + + let recordFiles = record.files; + if (recordFiles.length === undefined) recordFiles = [recordFiles]; + files.push(...recordFiles); + + // set score for the word in each file + recordFiles.forEach((file) => { + if (!scoreMap.has(file)) scoreMap.set(file, {}); + scoreMap.get(file)[word] = record.score; + }); + }); + + // create the mapping + files.forEach((file) => { + if (!fileMap.has(file)) fileMap.set(file, [word]); + else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word); + }); + }); + + // now check if the files don't contain excluded terms + const results = []; + for (const [file, wordList] of fileMap) { + // check if all requirements are matched + + // as search terms with length < 3 are discarded + const filteredTermCount = [...searchTerms].filter( + (term) => term.length > 2 + ).length; + if ( + wordList.length !== searchTerms.size && + wordList.length !== filteredTermCount + ) + continue; + + // ensure that none of the excluded terms is in the search result + if ( + [...excludedTerms].some( + (term) => + terms[term] === file || + titleTerms[term] === file || + (terms[term] || []).includes(file) || + (titleTerms[term] || []).includes(file) + ) + ) + break; + + // select one (max) score for the file. + const score = Math.max(...wordList.map((w) => scoreMap.get(file)[w])); + // add result to the result list + results.push([ + docNames[file], + titles[file], + "", + null, + score, + filenames[file], + ]); + } + return results; + }, + + /** + * helper function to return a node containing the + * search summary for a given text. keywords is a list + * of stemmed words. + */ + makeSearchSummary: (htmlText, keywords, anchor) => { + const text = Search.htmlToText(htmlText, anchor); + if (text === "") return null; + + const textLower = text.toLowerCase(); + const actualStartPosition = [...keywords] + .map((k) => textLower.indexOf(k.toLowerCase())) + .filter((i) => i > -1) + .slice(-1)[0]; + const startWithContext = Math.max(actualStartPosition - 120, 0); + + const top = startWithContext === 0 ? "" : "..."; + const tail = startWithContext + 240 < text.length ? "..." : ""; + + let summary = document.createElement("p"); + summary.classList.add("context"); + summary.textContent = top + text.substr(startWithContext, 240).trim() + tail; + + return summary; + }, +}; + +_ready(Search.init); diff --git a/_static/sphinx_highlight.js b/_static/sphinx_highlight.js new file mode 100644 index 00000000..8a96c69a --- /dev/null +++ b/_static/sphinx_highlight.js @@ -0,0 +1,154 @@ +/* Highlighting utilities for Sphinx HTML documentation. */ +"use strict"; + +const SPHINX_HIGHLIGHT_ENABLED = true + +/** + * highlight a given string on a node by wrapping it in + * span elements with the given class name. + */ +const _highlight = (node, addItems, text, className) => { + if (node.nodeType === Node.TEXT_NODE) { + const val = node.nodeValue; + const parent = node.parentNode; + const pos = val.toLowerCase().indexOf(text); + if ( + pos >= 0 && + !parent.classList.contains(className) && + !parent.classList.contains("nohighlight") + ) { + let span; + + const closestNode = parent.closest("body, svg, foreignObject"); + const isInSVG = closestNode && closestNode.matches("svg"); + if (isInSVG) { + span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); + } else { + span = document.createElement("span"); + span.classList.add(className); + } + + span.appendChild(document.createTextNode(val.substr(pos, text.length))); + const rest = document.createTextNode(val.substr(pos + text.length)); + parent.insertBefore( + span, + parent.insertBefore( + rest, + node.nextSibling + ) + ); + node.nodeValue = val.substr(0, pos); + /* There may be more occurrences of search term in this node. So call this + * function recursively on the remaining fragment. + */ + _highlight(rest, addItems, text, className); + + if (isInSVG) { + const rect = document.createElementNS( + "http://www.w3.org/2000/svg", + "rect" + ); + const bbox = parent.getBBox(); + rect.x.baseVal.value = bbox.x; + rect.y.baseVal.value = bbox.y; + rect.width.baseVal.value = bbox.width; + rect.height.baseVal.value = bbox.height; + rect.setAttribute("class", className); + addItems.push({ parent: parent, target: rect }); + } + } + } else if (node.matches && !node.matches("button, select, textarea")) { + node.childNodes.forEach((el) => _highlight(el, addItems, text, className)); + } +}; +const _highlightText = (thisNode, text, className) => { + let addItems = []; + _highlight(thisNode, addItems, text, className); + addItems.forEach((obj) => + obj.parent.insertAdjacentElement("beforebegin", obj.target) + ); +}; + +/** + * Small JavaScript module for the documentation. + */ +const SphinxHighlight = { + + /** + * highlight the search words provided in localstorage in the text + */ + highlightSearchWords: () => { + if (!SPHINX_HIGHLIGHT_ENABLED) return; // bail if no highlight + + // get and clear terms from localstorage + const url = new URL(window.location); + const highlight = + localStorage.getItem("sphinx_highlight_terms") + || url.searchParams.get("highlight") + || ""; + localStorage.removeItem("sphinx_highlight_terms") + url.searchParams.delete("highlight"); + window.history.replaceState({}, "", url); + + // get individual terms from highlight string + const terms = highlight.toLowerCase().split(/\s+/).filter(x => x); + if (terms.length === 0) return; // nothing to do + + // There should never be more than one element matching "div.body" + const divBody = document.querySelectorAll("div.body"); + const body = divBody.length ? divBody[0] : document.querySelector("body"); + window.setTimeout(() => { + terms.forEach((term) => _highlightText(body, term, "highlighted")); + }, 10); + + const searchBox = document.getElementById("searchbox"); + if (searchBox === null) return; + searchBox.appendChild( + document + .createRange() + .createContextualFragment( + '" + ) + ); + }, + + /** + * helper function to hide the search marks again + */ + hideSearchWords: () => { + document + .querySelectorAll("#searchbox .highlight-link") + .forEach((el) => el.remove()); + document + .querySelectorAll("span.highlighted") + .forEach((el) => el.classList.remove("highlighted")); + localStorage.removeItem("sphinx_highlight_terms") + }, + + initEscapeListener: () => { + // only install a listener if it is really needed + if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) return; + + document.addEventListener("keydown", (event) => { + // bail for input elements + if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return; + // bail with special keys + if (event.shiftKey || event.altKey || event.ctrlKey || event.metaKey) return; + if (DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS && (event.key === "Escape")) { + SphinxHighlight.hideSearchWords(); + event.preventDefault(); + } + }); + }, +}; + +_ready(() => { + /* Do not call highlightSearchWords() when we are on the search page. + * It will highlight words from the *previous* search query. + */ + if (typeof Search === "undefined") SphinxHighlight.highlightSearchWords(); + SphinxHighlight.initEscapeListener(); +}); diff --git a/developer_guide.html b/developer_guide.html new file mode 100644 index 00000000..48757038 --- /dev/null +++ b/developer_guide.html @@ -0,0 +1,113 @@ + + + + + + + Developer guide — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Developer guide

+

TOOD

+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/genindex.html b/genindex.html new file mode 100644 index 00000000..501b4fc7 --- /dev/null +++ b/genindex.html @@ -0,0 +1,174 @@ + + + + + + Index — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ + +

Index

+ +
+ C + | E + | F + | N + | O + | S + | T + +
+

C

+ + +
+ +

E

+ + +
+ +

F

+ + +
+ +

N

+ + +
+ +

O

+ + +
+ +

S

+ + +
+ +

T

+ + +
+ + + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/index.html b/index.html new file mode 100644 index 00000000..305c8f6b --- /dev/null +++ b/index.html @@ -0,0 +1,147 @@ + + + + + + + GEOUNED — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

GEOUNED

+

GEOUNED converts CAD to Constructive Solid Geometry (CSG) formats for use in +Monte Carlo transport codes. +Supported codes include OpenMC, PHITS, Serpent and MCNP.

+ +
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/install.html b/install.html new file mode 100644 index 00000000..4aba45ca --- /dev/null +++ b/install.html @@ -0,0 +1,268 @@ + + + + + + + Install — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Install

+

There are several options for installing GEOUNED package. +The installation selected has implications for how you run GEOUNED Python scripts. +Currently the Mamba / Conda install is the recommended method. +The main complication when installing GEOUNED is integration between the main dependency (FreeCAD) and the users system Python. +Mamba / Conda provides the a connection between the FreeCAD Python library and your system Python. +Users have had success installing FreeCAD and making use of the Python version inbuilt into FreeCAD +.. TODO as well so these installation methods are listed for completeness.

+
+

Linux

+ +
+

User install with Conda

+

First we need to install a Conda distribution. There are a few options but we here we opt for MiniConda3 as it downloads quicker than the fuller AnaConda.

+

You can follow the install instructions for MiniConda3 or follow the commands below. +Download.

+
mkdir -p ~/miniconda3
+wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh
+
+
+

Install MiniConda3

+
bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3
+
+
+

Activate the base environment in your current terminal

+
~/miniconda3/bin/conda init bash
+
+
+

It is recommended to create a new environment

+
conda create --name new_new python=3.11
+
+
+

Activate the new environment

+
conda activate new_new
+
+
+

We have aspirations to create a conda-forge package which will combine these final two steps, but for now FreeCAD and GEOUNED can be installed in two commands. +Install FreeCAD which is the main dependency

+
conda install -c conda-forge freecad
+
+
+

Install GEOUNED with pip, we also prefix this with “python -m” to ensure that pip install uses the correct Python interpreter.

+
python -m pip install git+https://github.com/GEOUNED-code/GEOUNED.git
+
+
+

Then you will be able to run import GEOUNED from within Python

+
import geouned
+
+
+
+
+

Developer install with Mamba

+

First we need to install a Mamba distribution. There are a few options but here we opt for Miniforge3 as it includes Mamba.

+

You can follow the install instructions for Miniforge3 here or follows the commands below. +Download

+
curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh"
+bash Miniforge3-$(uname)-$(uname -m).sh
+
+
+

Install Miniforge3

+
bash Miniforge3-Linux-x86_64.sh
+
+
+

Activate the base environment in your current terminal

+
mamba activate
+
+
+

It is recommended to create a new environment

+
mamba create --name new_new python=3.11
+
+
+

Activate the new environment

+
mamba activate new_new
+
+
+

We have aspirations to create a conda-forge package which will combine these final two steps, but for now FreeCAD and GEOUNED can be installed in two commands. +Install FreeCAD which is the main dependency

+
mamba install -c conda-forge freecad
+
+
+

Fork the GEOUNED-org/GEOUNED repository by clicking this link, unchecking the Copy the main branch only check box and clicking create fork

+

https://github.com/GEOUNED-org/GEOUNED/fork

+

Assuming that you have setup and added SSH keys then we can clone your forked GEOUNED repository. +Replace <USER> with your own github username

+
git clone git@github.com:<USER>/GEOUNED.git
+
+
+

Then change directory into the repository root like this

+
cd GEOUNED
+
+
+

Install GEOUNED with pip, we also prefix this with “python -m” to ensure that pip install uses the correct Python interpreter. +We are also adding the -e to get an editable install so that when you make local changes to the repo these are picked up in your Python scripts straight away (without needing to reinstall). +We also include all the optional dependencies so that we can run tests locally and build the docs locally.

+
python -m pip install -e .[tests,docs]
+
+
+

Then you will be able to run import GEOUNED from within Python

+
import geouned
+
+
+

Checkout feature branches from dev and make local changes on you own branch

+
git checkout dev
+git checkout -b 'my_new_feature'
+
+
+

Pull requests are welcome

+
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/methodology.html b/methodology.html new file mode 100644 index 00000000..b54439c4 --- /dev/null +++ b/methodology.html @@ -0,0 +1,119 @@ + + + + + + + Methodology — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Methodology

+

There are several documents on the methodology of GEOUNED

+

Publication

+

User_Guide_GEOUNED_v2.0.pdf

+

Training_on_GEOUNED_tool

+

TODO convert various data sources to rst format for these docs

+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/objects.inv b/objects.inv new file mode 100644 index 00000000..0403ad6c --- /dev/null +++ b/objects.inv @@ -0,0 +1,6 @@ +# Sphinx inventory version 2 +# Project: GEOUNED +# Version: +# The remainder of this file is compressed using zlib. +xڍn0D|^s&HI[xm 6h 2f+ ,^PDžIygjM9Li)#EéDe̡ eFj91l M :fƀ7Ug +j򯉠&p:({w` yXG {.޾Ѳn+i/,Aym؜alaP YzX(dp ԫY7Ǩ=G{EG*ĵJ>ɾDB Qlb<AV hgU`9O$k i*;^tvJϧz{cswCVCհ ~j"2"/w.6 \ No newline at end of file diff --git a/python_api.html b/python_api.html new file mode 100644 index 00000000..0c0a8ae9 --- /dev/null +++ b/python_api.html @@ -0,0 +1,381 @@ + + + + + + + Python API reference — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Python API reference

+
+
+class geouned.CadToCsg(stepFile='', options=<geouned.GEOUNED.Utils.data_classes.Options object>, tolerances=<geouned.GEOUNED.Utils.data_classes.Tolerances object>, numeric_format=<geouned.GEOUNED.Utils.data_classes.NumericFormat object>, settings=<geouned.GEOUNED.Utils.data_classes.Settings object>)[source]
+

Bases: object

+

Base class for the conversion of CAD to CSG models

+
+
Parameters:
+
    +
  • stepFile (str, optional) – Name of the CAD file (in STEP format) to +be converted. Defaults to “”.

  • +
  • options (geouned.Options, optional) – An instance of a geouned.Options +class with the attributes set for the desired conversion. Defaults +to a geouned.Options with default attributes values.

  • +
  • tolerances (geouned.Tolerances, optional) – An instance of a +geouned.Tolerances class with the attributes set for the desired +conversion. Defaults to a geouned.Tolerances with default +attributes values.

  • +
  • numeric_format (geouned.NumericFormat, optional) – An instance of a +geouned.NumericFormat class with the attributes set for the desired +conversion. Defaults to a geouned.NumericFormat with default +attributes values.

  • +
  • settings (geouned.Settings, optional) – An instance of a +geouned.Settings class with the attributes set for the desired +conversion. Defaults to a geouned.Settings with default +attributes values.

  • +
+
+
+
+
+export_csg(title='Converted with GEOUNED', geometryName='csg', outFormat=('openMC_XML', 'openMC_PY', 'serpent', 'phits', 'mcnp'), volSDEF=False, volCARD=True, UCARD=101, dummyMat=False, cellCommentFile=False, cellSummaryFile=True)[source]
+

Writes out a CSG file in the requested Monte Carlo code format.

+
+
Parameters:
+
    +
  • title (str, optional) – Title of the model written at the top of the +output file. Defaults to “Geouned conversion”.

  • +
  • geometryName (str, optional) – the file stem of the output file(s). +Defaults to “converted_with_geouned”.

  • +
  • outFormat (Tuple[str], optional) – Format for the output +geometry. Available format are: “mcnp”, “openMC_XML”, +“openMC_PY”, “phits” and “serpent”. Several output format can +be written in the same method call. Defaults to output all codes.

  • +
  • volSDEF (bool, optional) – Write SDEF definition and tally of solid +cell for stochastic volume checking. Defaults to False.

  • +
  • volCARD (bool, optional) – Write the CAD calculated volume in the +cell definition using the VOL card. Defaults to True.

  • +
  • UCARD (int, optional) – Write universe card in the cell definition +with the specified universe number (if value = 0 Universe card +is not written). Defaults to None.

  • +
  • dummyMat (bool, optional) – Write dummy material definition card in +the MCNP output file for all material labels present in the +model. Dummy material definition is “MX 1001 1”. Defaults to False.

  • +
  • cellCommentFile (bool, optional) – Write an additional file with +comment associated to each CAD cell in the MCNP output file. +Defaults to False.

  • +
  • cellSummaryFile (bool, optional) – Write an additional file with +information on the CAD cell translated. Defaults to True.

  • +
+
+
+
+ +
+
+classmethod from_json(filename)[source]
+

Creates a CadToCsg instance and returns the instance. Populating the +Options, Tolerance, Settings and NumericFormat attributes from matching +key names in the JSON. If export_to_csg key is present then this method +also runs .start() and .export_to_csg() on the instance.

+
+
Parameters:
+

str (filename) – The filename of the config file. Defaults to “config.json”.

+
+
Raises:
+
    +
  • FileNotFoundError – If the config file is not found

  • +
  • ValueError – If the config JSON file is found to contain an invalid key

  • +
+
+
Returns:
+

returns a geouned CadToCsg class instance.

+
+
Return type:
+

geouned.CadToCsg

+
+
+
+ +
+ +
+
+class geouned.NumericFormat(P_abc='14.7e', P_d='14.7e', P_xyz='14.7e', S_r='14.7e', S_xyz='14.7e', C_r='12f', C_xyz='12f', K_xyz='13.6e', K_tan2='12f', T_r='14.7e', T_xyz='14.7e', GQ_1to6='18.15f', GQ_7to9='18.15f', GQ_10='18.15f')[source]
+

Bases: object

+

Numerical format options for each of the surface types.

+
+
Parameters:
+
    +
  • P_abc (str, optional) – Plane general a,b,c params. Defaults to “14.7e”.

  • +
  • P_d (str, optional) – Plane general d params. Defaults to “14.7e”.

  • +
  • P_xyz (str, optional) – PX/PY/PZ params. Defaults to “14.7e”.

  • +
  • S_r (str, optional) – SO/SX/SY/SZ/S radius. Defaults to “14.7e”.

  • +
  • S_xyz (str, optional) – SO/SX/SY/SZ/S center. Defaults to “14.7e”.

  • +
  • C_r (str, optional) – Cylinder radius. Defaults to “12f”.

  • +
  • C_xyz (str, optional) – Cylinder center. Defaults to “12f”.

  • +
  • K_xyz (str, optional) – Cone apex. Defaults to “13.6e”.

  • +
  • K_tan2 (str, optional) – Cone tan^2 value. Defaults to “12f”.

  • +
  • T_r (str, optional) – Torus radii. Defaults to “14.7e”.

  • +
  • T_xyz (str, optional) – Torus center. Defaults to “14.7e”.

  • +
  • GQ_1to6 (str, optional) – GQ 1 to 6 coefficients (order 2 x2,y2,z2,xy,…). Defaults to “18.15f”.

  • +
  • GQ_7to9 (str, optional) – GQ 7 to 9 coefficients (order 1 x,y,z). Defaults to “18.15f”.

  • +
  • GQ_10 (str, optional) – GQ 10 coefficient. Defaults to “18.15f”.

  • +
+
+
+
+ +
+
+class geouned.Options(forceCylinder=False, newSplitPlane=True, delLastNumber=False, enlargeBox=2.0, nPlaneReverse=0, splitTolerance=0.0, scaleUp=True, quadricPY=False, Facets=False, prnt3PPlane=False, forceNoOverlap=False)[source]
+

Bases: object

+

A class for containing conversion options

+
+
Parameters:
+
    +
  • forceCylinder (bool, optional) – Use cylinder (instead of cones) as +ancillary surface where unclosed torus surfaces are involved in +the solid definition. Defaults to False.

  • +
  • newSplitPlane (bool, optional) – New method to consider plane as +cutting surface during the decomposition process. Former method +split first planes perpendicular to X,Y,Z axis and then the +other planes involved in the solid definition. New method group +all parallel planes independently whether their normal are +along X,Y,Z axes, and start the decomposition process cutting +first with the group having the highest number of parallel +planes. Defaults to True.

  • +
  • delLastNumber (bool, optional) – Deleting the last word in the +comment if it is a number. Defaults to False.

  • +
  • enlargeBox (Real, optional) – Enlarge box boundary when evaluating +the constraint table during the simplification of the void cell +definition. (unit is millimeter). Defaults to 2.

  • +
  • nPlaneReverse (int, optional) – Threshold value to determine whether +cut with parallel planes should be carried out first. Defaults +to 0.

  • +
  • splitTolerance (Real, optional) – Fuzzy tolerance value used in the +FreeCAD function “BOPTools.SplitAPI.slice”. This function is +used during the solid decomposition process. Defaults to 0.

  • +
  • scaleUp (bool, optional) – Scale up Fuzzy tolerance once get below +1e-12. Defaults to True.

  • +
  • quadricPY (bool, optional) – In openMC python script format, the +cones or cylinders no aligned with the X,Y, or Z axis can be +defined using the openmc.Cone or open.Cylinder methods but can +also be defined with their quadric parameter. If “quadricPY” is +11 True then all cones and cylinders will be defined in the +openMC python script format under their quadric form. Defaults +to False.

  • +
  • Facets (bool, optional) – use alternative conversion module when +geometry is defined by cells compound by only triangular plane +faces. Defaults to False.

  • +
  • prnt3PPlane (bool, optional) – print 3 point plane definition in +output as 3 points coordinates. Defaults to False.

  • +
  • forceNoOverlap (bool, optional) – force no overlaping cell +definition. Adjacent cell definition are rested from current +cell definition. Defaults to False.

  • +
+
+
+
+ +
+
+class geouned.Settings(matFile='', voidGen=True, debug=False, compSolids=True, simplify='no', cellRange=[], exportSolids='', minVoidSize=200.0, maxSurf=50, maxBracket=30, voidMat=[], voidExclude=[], startCell=1, startSurf=1, sort_enclosure=False)[source]
+

Bases: object

+

Settings for changing the way the CAD to CSG conversion is done

+
+
Parameters:
+
    +
  • stepFile (str, optional) – Name of the CAD file (in STEP format) to +be converted. Defaults to “”.

  • +
  • matFile (str, optional) – _description_. Defaults to “”.

  • +
  • voidGen (bool, optional) – Generate voids of the geometry. Defaults +to True.

  • +
  • debug (bool, optional) – Write step files of original and decomposed +solids, for each solid in the STEP file. Defaults to False.

  • +
  • compSolids (bool, optional) – Join subsolids of STEP file as a single +compound solid. Step files generated with SpaceClaim have not +exactly the same level of solids as FreeCAD. It may a happened +that solids defined has separated solids are read by FreeCAD +as a single compound solid (and will produce only one MCNP +cell). In this case compSolids should be set to False. Defaults +to True.

  • +
  • simplify (str, optional) – Simplify the cell definition considering +relative surfaces position and using Boolean logics. Available +options are: “no” no optimization, “void” only void cells are +simplified. Algorithm is faster but the simplification is not +optimal. “voidfull” : only void cells are simplified with the +most optimal algorithm. The time of the conversion can be +multiplied by 5 or more. “full” : all the cells (solids and +voids) are simplified. Defaults to “No”.

  • +
  • cellRange (list, optional) – Range of cell to be converted (only one +range is allowed, e.g [100,220]). Default all solids are +converted. Defaults to [].

  • +
  • exportSolids (str, optional) – Export CAD solid after reading. +The execution is stopped after export, the translation is not +carried out. Defaults to “”.

  • +
  • minVoidSize (float, optional) – Minimum size of the edges of the +void cell. Units are in mm. Defaults to 200.0.

  • +
  • maxSurf (int, optional) – #TODO

  • +
  • maxBracket (int, optional) – Maximum number of brackets (solid +complementary) allowed in void cell definition. Defaults to 30.

  • +
  • voidMat (list, optional) – Assign a material defined by the user +instead of void for cells without material definition and the +cells generated in the automatic void generation. The format +is a 3 valued tuple (mat_label, mat_density, mat_description). +Example (100,1e-3,’Air assigned to Void’). Defaults to [].

  • +
  • voidExclude (list, optional) – #TODO see issue 87. Defaults to [].

  • +
  • startCell (int, optional) – Starting cell numbering label. Defaults to 1.

  • +
  • startSurf (int, optional) – Starting surface numbering label. Defaults to 1.

  • +
  • sort_enclosure (bool, optional) – If enclosures are defined in the +CAD models, the voids cells of the enclosure will be located in +the output file in the same location where the enclosure solid +is located in the CAD solid tree.. Defaults to False.

  • +
+
+
+
+ +
+
+class geouned.Tolerances(relativeTol=False, relativePrecision=1e-06, value=1e-06, distance=0.0001, angle=0.0001, pln_distance=0.0001, pln_angle=0.0001, cyl_distance=0.0001, cyl_angle=0.0001, sph_distance=0.0001, kne_distance=0.0001, kne_angle=0.0001, tor_distance=0.0001, tor_angle=0.0001, min_area=0.01)[source]
+

Bases: object

+

A class for containing tolerances values

+
+
Parameters:
+
    +
  • relativeTol (bool, optional) – _description_. Defaults to False.

  • +
  • relativePrecision (float, optional) – relative precision. Defaults to 1.0e-6.

  • +
  • value (float, optional) – Tolerance in single value comparison. Defaults to 1.0e-6.

  • +
  • distance (float, optional) – General Distance Tolerance. Defaults to 1.0e-4.

  • +
  • angle (float, optional) – General Angle Tolerance. Defaults to 1.0e-4.

  • +
  • pln_distance (float, optional) – distance between planes equal planes if distance between parallel planes < 1e-4 cm. Defaults to 1.0e-4.

  • +
  • pln_angle (float, optional) – angle between axis. 1e-4 : planes separate each other 0.1mm each 1m. Defaults to 1.0e-4.

  • +
  • cyl_distance (float, optional) – distance between radius/center. Defaults to 1.0e-4.

  • +
  • cyl_angle (float, optional) – angle between axis. Defaults to 1.0e-4.

  • +
  • sph_distance (float, optional) – distance between radius/center. Defaults to 1.0e-4.

  • +
  • kne_distance (float, optional) – distance between apex. Defaults to 1.0e-4.

  • +
  • kne_angle (float, optional) – angle between semiangles/axis. Defaults to 1.0e-4.

  • +
  • tor_distance (float, optional) – distance between Major/Minor radii/center. Defaults to 1.0e-4.

  • +
  • tor_angle (float, optional) – angle between axis. Defaults to 1.0e-4.

  • +
  • min_area (float, optional) – minimum face area to consider in cell definition. Defaults to 1.0e-2.

  • +
+
+
+
+ +
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/search.html b/search.html new file mode 100644 index 00000000..37f295e6 --- /dev/null +++ b/search.html @@ -0,0 +1,125 @@ + + + + + + Search — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
  • + +
  • +
  • +
+
+
+
+
+ + + + +
+ +
+ +
+
+ +
+
+
+
+ + + + + + + + + \ No newline at end of file diff --git a/searchindex.js b/searchindex.js new file mode 100644 index 00000000..33c2258a --- /dev/null +++ b/searchindex.js @@ -0,0 +1 @@ +Search.setIndex({"alltitles": {"Command Line Tool Usage": [[7, "command-line-tool-usage"]], "Developer guide": [[0, "developer-guide"]], "Developer install with Mamba": [[2, "developer-install-with-mamba"]], "GEOUNED": [[1, "geouned"]], "Install": [[2, "install"]], "Linux": [[2, "linux"]], "Methodology": [[3, "methodology"]], "Python API reference": [[4, "python-api-reference"]], "Python Package Usage": [[6, "python-package-usage"]], "Usage": [[5, "usage"]], "User install with Conda": [[2, "user-install-with-conda"]], "User install with Mamba (recommended)": [[2, "user-install-with-mamba-recommended"]]}, "docnames": ["developer_guide", "index", "install", "methodology", "python_api", "usage/index", "usage/python_api_usage", "usage/python_cli_usage"], "envversion": {"sphinx": 61, "sphinx.domains.c": 3, 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"request": [2, 4], "rest": 4, "return": 4, "root": 2, "rst": 3, "run": [2, 4, 6], "s_r": [4, 6, 7], "s_xyz": [4, 6, 7], "same": [4, 7], "scale": 4, "scaleup": [4, 6, 7], "script": [2, 4, 6], "sdef": 4, "section": [6, 7], "see": [4, 7], "select": 2, "semiangl": 4, "separ": 4, "serpent": [1, 4, 6, 7], "set": [1, 4, 6, 7], "setup": 2, "sever": [2, 3, 4], "sh": 2, "should": 4, "show": [6, 7], "simpli": 6, "simplif": 4, "simplifi": [4, 6, 7], "singl": 4, "size": 4, "slice": 4, "so": [2, 4], "solid": [1, 4, 6], "sort_enclosur": [4, 6, 7], "sourc": [3, 4], "spaceclaim": 4, "specif": 7, "specifi": [4, 6, 7], "sph_distanc": [4, 6, 7], "split": 4, "splitapi": 4, "splittoler": [4, 6, 7], "ssh": 2, "start": [4, 6], "startcel": [4, 6, 7], "startsurf": [4, 6, 7], "stem": 4, "step": [2, 4, 6, 7], "stepfil": [4, 6, 7], "stochast": 4, "stop": 4, "stp": [6, 7], "str": 4, "straight": 2, "subsolid": 4, "success": 2, "suit": 6, "support": 1, "surfac": 4, "sx": 4, "sy": 4, "system": [2, 6], "sz": 4, "t_r": [4, 6, 7], "t_xyz": [4, 6, 7], "tabl": 4, "talli": 4, "tan": 4, "termin": [2, 7], "test": 2, "than": 2, "thi": [2, 4, 7], "threshold": 4, "time": 4, "titl": [4, 6, 7], "todo": [2, 3, 4], "toler": [1, 4, 6, 7], "tood": 0, "tool": [1, 5], "top": 4, "tor_angl": [4, 6, 7], "tor_dist": [4, 6, 7], "toru": 4, "training_on_geouned_tool": 3, "translat": 4, "transport": 1, "tree": 4, "triangular": 4, "true": [4, 6, 7], "tupl": 4, "two": [2, 6], "type": 4, "u": 2, "ucard": [4, 6], "unam": 2, "uncheck": 2, "unclos": 4, "under": 4, "unit": 4, "univers": 4, "up": [2, 4], "us": [1, 2, 4, 5, 6, 7], "usag": 1, "user": [1, 4, 6], "user_guide_geouned_v2": 3, "usernam": 2, "util": 4, "valu": [4, 6, 7], "valueerror": 4, "vaniti": 6, "variou": 3, "version": 2, "void": 4, "voidexclud": [4, 6, 7], "voidful": 4, "voidgen": [4, 6, 7], "voidmat": [4, 6, 7], "vol": 4, "volcard": [4, 6, 7], "volsdef": [4, 6, 7], "volum": 4, "wai": [4, 7], "we": 2, "welcom": 2, "well": 2, "wget": 2, "when": [2, 4, 7], "where": 4, "whether": 4, "which": [2, 6], "within": 2, "without": [2, 4], "word": 4, "work": 7, "write": 4, "written": 4, "x": 4, "x2": 4, "x86_64": 2, "xy": 4, "y": 4, "y2": 4, "you": [2, 6, 7], "your": [2, 6, 7], "z": 4, "z2": 4}, "titles": ["Developer guide", "GEOUNED", "Install", "Methodology", "Python API reference", "Usage", "1. Python Package Usage", "2. Command Line Tool Usage"], "titleterms": {"api": 4, "command": 7, "conda": 2, "develop": [0, 2], "geoun": 1, "guid": 0, "instal": 2, "line": 7, "linux": 2, "mamba": 2, "methodologi": 3, "packag": 6, "python": [4, 6], "recommend": 2, "refer": 4, "tool": 7, "usag": [5, 6, 7], "user": 2}}) \ No newline at end of file diff --git a/usage/index.html b/usage/index.html new file mode 100644 index 00000000..9e18177c --- /dev/null +++ b/usage/index.html @@ -0,0 +1,125 @@ + + + + + + + Usage — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + + + +
+ + +
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+

Usage

+

GEOUNED can be used as a Python package with the API or as a command line tool with the CLI.

+ +
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+ + + + \ No newline at end of file diff --git a/usage/python_api_usage.html b/usage/python_api_usage.html new file mode 100644 index 00000000..3869cdde --- /dev/null +++ b/usage/python_api_usage.html @@ -0,0 +1,230 @@ + + + + + + + 1. Python Package Usage — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + + + +
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+ +
+

1. Python Package Usage

+

The Python API has two main classes. +The first main class is CadToCsg() which converts CAD geometry to Constructive Solid Geometry (CSG). +There are many arguments that can be passed into the CadToCsg() class which are documented in the Python API reference section of the documentation.

+

If you have install GEOUNED and FreeCAD into your system Python then you can simply run a .py script with Python. +The most minimal use case below shows GEOUNED being imported and the CadToCsg being used to convert a STEP CAD file called ‘cuboid.stp’ into a vanity of CSG format. +The example makes use of default attributes.

+
import geouned
+geo = geouned.CadToCsg(stepFile='cuboid.stp')
+geo.start()
+geo.export_csg()
+
+
+

Users can change geouned.Options(), geouned.Settings(), geouned.Tolerances() and geouned.NumericFormat() to suit the conversion desired. +The following example shows a usage with every attributes specified.

+
import geouned
+
+my_options = geouned.Options(
+    forceCylinder=False,
+    newSplitPlane=True,
+    delLastNumber=False,
+    enlargeBox=2,
+    nPlaneReverse=0,
+    splitTolerance=0,
+    scaleUp=True,
+    quadricPY=False,
+    Facets=False,
+    prnt3PPlane=False,
+    forceNoOverlap=False,
+)
+
+my_settings = geouned.Settings(
+    matFile="",
+    voidGen=True,
+    debug=False,
+    compSolids=True,
+    simplify="no",
+    cellRange=[],
+    exportSolids="",
+    minVoidSize=200.0,
+    maxSurf=50,
+    maxBracket=30,
+    voidMat=[],
+    voidExclude=[],
+    startCell=1,
+    startSurf=1,
+    sort_enclosure=False,
+)
+
+my_tolerances = geouned.Tolerances(
+    relativeTol=False,
+    relativePrecision=0.000001,
+    value=0.000001,
+    distance=0.0001,
+    angle=0.0001,
+    pln_distance=0.0001,
+    pln_angle=0.0001,
+    cyl_distance=0.0001,
+    cyl_angle=0.0001,
+    sph_distance=0.0001,
+    kne_distance=0.0001,
+    kne_angle=0.0001,
+    tor_distance=0.0001,
+    tor_angle=0.0001,
+    min_area=0.01,
+)
+my_numeric_format = geouned.NumericFormat(
+    P_abc="14.7e",
+    P_d="14.7e",
+    P_xyz="14.7e",
+    S_r="14.7e",
+    S_xyz="14.7e",
+    C_r="12f",
+    C_xyz="12f",
+    K_xyz="13.6e",
+    K_tan2="12f",
+    T_r="14.7e",
+    T_xyz="14.7e",
+    GQ_1to6="18.15f",
+    GQ_7to9="18.15f",
+    GQ_10="18.15f",
+)
+
+geo = geouned.CadToCsg(
+    stepFile="cuboid.stp,
+    options=my_options,
+    settings=my_settings,
+    tolerances=my_tolerances,
+    numeric_format=my_numeric_format,
+)
+
+geo.start()
+
+geo.export_csg(
+    title="Converted with GEOUNED",
+    geometryName="csg",
+    outFormat=(
+        "openMC_XML",
+        "openMC_PY",
+        "serpent",
+        "phits",
+        "mcnp",
+    ),
+    volSDEF=True,
+    volCARD=False,
+    UCARD=None,
+    dummyMat=True,
+    cellCommentFile=False,
+    cellSummaryFile=False,
+)
+
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/usage/python_cli_usage.html b/usage/python_cli_usage.html new file mode 100644 index 00000000..d941c8ef --- /dev/null +++ b/usage/python_cli_usage.html @@ -0,0 +1,218 @@ + + + + + + + 2. Command Line Tool Usage — GEOUNED 1.0.1 documentation + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
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+
+
+ +
+

2. Command Line Tool Usage

+

GEOUNED can be used in the command line.

+

These examples assumes you have a CAD STEP file in the current working directory of the terminal called “cuboid.stp”

+

The most minimal use case below shows a minimal config.json file being used.

+

First create a JSON file called “config.json” containing the following.

+
{
+    "stepFile": "cuboid.stp"
+}
+
+
+

Then execute the command line interface tool to convert your STEP file to CSG files with the default configuration.

+
geouned_cadtocsg -i config.json
+
+
+

The following example shows a usage with every attributes specified in the config.json file.

+

The contents of the JSON file closely matches the Class arguments and method arguments when using the Python package.

+

For a full description of each keyword see the Python API reference section of the documentation.

+

Here is a complete JSON file specification

+
{
+    "stepFile": "cuboid.stp",
+    "Options": {
+        "forceCylinder": false,
+        "newSplitPlane": true,
+        "delLastNumber": false,
+        "enlargeBox": 2.0,
+        "nPlaneReverse": 0,
+        "splitTolerance": 0.0,
+        "scaleUp": true,
+        "quadricPY": false,
+        "Facets": false,
+        "prnt3PPlane": false,
+        "forceNoOverlap": false
+    },
+    "Tolerances": {
+        "relativeTol": false,
+        "relativePrecision": 1e-06,
+        "value": 1e-06,
+        "distance": 0.0001,
+        "angle": 0.0001,
+        "pln_distance": 0.0001,
+        "pln_angle": 0.0001,
+        "cyl_distance": 0.0001,
+        "cyl_angle": 0.0001,
+        "sph_distance": 0.0001,
+        "kne_distance": 0.0001,
+        "kne_angle": 0.0001,
+        "tor_distance": 0.0001,
+        "tor_angle": 0.0001,
+        "min_area": 0.01
+    },
+    "NumericFormat": {
+        "P_abc": "14.7e",
+        "P_d": "14.7e",
+        "P_xyz": "14.7e",
+        "S_r": "14.7e",
+        "S_xyz": "14.7e",
+        "C_r": "12f",
+        "C_xyz": "12f",
+        "K_xyz": "13.6e",
+        "K_tan2": "12f",
+        "T_r": "14.7e",
+        "T_xyz": "14.7e",
+        "GQ_1to6": "18.15f",
+        "GQ_7to9": "18.15f",
+        "GQ_10": "18.15f"
+    },
+    "Settings": {
+        "matFile": "",
+        "voidGen": true,
+        "debug": false,
+        "compSolids": true,
+        "simplify": "no",
+        "cellRange": [],
+        "exportSolids": "",
+        "minVoidSize": 200.0,
+        "maxSurf": 50,
+        "maxBracket": 30,
+        "voidMat": [],
+        "voidExclude": [],
+        "startCell": 1,
+        "startSurf": 1,
+        "sort_enclosure": false
+    },
+    "export_csg":{
+        "title": "Converted with GEOUNED",
+        "geometryName": "csg",
+        "outFormat": ["openMC_XML", "openMC_PY", "serpent", "phits", "mcnp"],
+        "volSDEF": false,
+        "volCARD": true,
+        "dummyMat": false,
+        "cellCommentFile": false,
+        "cellSummaryFile": true
+    }
+}
+
+
+

This is converted in the same way as the minimal JSON config file

+
geouned_cadtocsg -i config.json
+
+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file