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Author: cmdcolin

src/stories/COVIDApollo.stories.ts

@@ -14,8 +14,7 @@ export const Simple: StoryObj<ApolloArgs> = {
   args: {
     locString: 'NC_045512.2:17894..28259',
     genome: 'SARS-CoV-2',
-    divId: 'mysvg',
     trackName: 'Mature peptides',
     type: TRACK_TYPE.ISOFORM,
-  },
+  } satisfies ApolloArgs,
 }

src/stories/COVIDStatic.stories.ts

@@ -10,11 +10,14 @@ export default {
   render: args => createExampleStatic(args),
 } satisfies Meta
 
+const ncListUrlTemplate =
+  'https://s3.amazonaws.com/agrjbrowse/docker/3.2.0/SARS-CoV-2/tracks/All Genes/{refseq}/trackData.jsonz'
+
 export const Simple: StoryObj<StaticArgs> = {
   args: {
     locString: 'NC_045512.2:17894..28259',
     genome: 'SARS-CoV-2',
-    divId: 'mysvg',
     type: TRACK_TYPE.ISOFORM,
-  },
+    ncListUrlTemplate,
+  } satisfies StaticArgs,
 }

src/stories/FlyApollo.stories.ts

@@ -14,111 +14,99 @@ export const Fly1: StoryObj<ApolloArgs> = {
   args: {
     locString: '2L:130639..135911',
     genome: 'fly',
-    divId: 'mysvg',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly2: StoryObj<ApolloArgs> = {
   args: {
     locString: '2R:23974973..23989002',
     genome: 'fly',
-    divId: 'viewerFlyExample3',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
     variantFilter: ['NT_033778.4:g.23975146T>C'],
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly3: StoryObj<ApolloArgs> = {
   args: {
     locString: '2R:23974973..23989002',
     genome: 'fly',
-    divId: 'viewerFlyExample2',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly4: StoryObj<ApolloArgs> = {
   args: {
     locString: '2L:130639..135911',
     genome: 'fly',
-    divId: 'viewerFlyExample1NoLabel',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly5: StoryObj<ApolloArgs> = {
   args: {
     locString: '2R:23974973..23989002',
     genome: 'fly',
-    divId: 'viewerFlyExample3NoLabel',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
     variantFilter: ['NT_033778.4:g.23975146T>C'],
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly6: StoryObj<ApolloArgs> = {
   args: {
     locString: '2R:23974973..23989002',
     genome: 'fly',
-    divId: 'viewerFlyExample2NoLabel',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly7: StoryObj<ApolloArgs> = {
   args: {
     locString: '2R:23974973..23989002',
     genome: 'fly',
-    divId: 'viewerFlyExample2NoLabelAnd',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly8: StoryObj<ApolloArgs> = {
   args: {
     locString: '3R:22693140..22699809',
     genome: 'fly',
-    divId: 'viewerFlyExample3',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly9: StoryObj<ApolloArgs> = {
   args: {
     locString: '2R:23974972..23989001',
     genome: 'fly',
-    divId: 'viewerFlyExample4',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly10: StoryObj<ApolloArgs> = {
   args: {
     locString: '3R:22693140..22699809',
     genome: 'fly',
-    divId: 'viewerFlyExample5',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
     variantFilter: ['FB:FBal0265700', 'FB:FBal0265699'],
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly11: StoryObj<ApolloArgs> = {
   args: {
     locString: '2R:18614210..18615018',
     genome: 'fly',
-    divId: 'viewerFlyExample6',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
     variantFilter: ['FB:FBal0325512'],
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Fly12: StoryObj<ApolloArgs> = {
   args: {
     locString: 'X:2023822..2043557',
     genome: 'fly',
-    divId: 'viewerFlyExample7',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
     variantFilter: ['FB:FBal0212726'],
-  },
+  } satisfies ApolloArgs,
 }

src/stories/FlyStatic.stories.ts

@@ -10,115 +10,132 @@ export default {
   render: args => createExampleStatic(args),
 } satisfies Meta
 
+const vcfTabixUrl =
+  'https://s3.amazonaws.com/agrjbrowse/VCF/7.0.0/fly-latest.vcf.gz'
+const ncListUrlTemplate =
+  'https://s3.amazonaws.com/agrjbrowse/docker/7.0.0/FlyBase/fruitfly/tracks/All_Genes/{refseq}/trackData.jsonz'
+
 export const Fly1: StoryObj<StaticArgs> = {
   args: {
     locString: '2L:130639..135911',
     genome: 'fly',
-    divId: 'mysvg',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly2: StoryObj<StaticArgs> = {
   args: {
     locString: '2R:23974973..23989002',
     genome: 'fly',
-    divId: 'viewerFlyExample3',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
     variantFilter: ['NT_033778.4:g.23975146T>C'],
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly3: StoryObj<StaticArgs> = {
   args: {
     locString: '2R:23974973..23989002',
     genome: 'fly',
-    divId: 'viewerFlyExample2',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly4: StoryObj<StaticArgs> = {
   args: {
     locString: '2L:130639..135911',
     genome: 'fly',
-    divId: 'viewerFlyExample1NoLabel',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly5: StoryObj<StaticArgs> = {
   args: {
     locString: '2R:23974973..23989002',
     genome: 'fly',
-    divId: 'viewerFlyExample3NoLabel',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
     variantFilter: ['NT_033778.4:g.23975146T>C'],
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly6: StoryObj<StaticArgs> = {
   args: {
     locString: '2R:23974973..23989002',
     genome: 'fly',
-    divId: 'viewerFlyExample2NoLabel',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly7: StoryObj<StaticArgs> = {
   args: {
     locString: '2R:23974973..23989002',
     genome: 'fly',
-    divId: 'viewerFlyExample2NoLabelAnd',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly8: StoryObj<StaticArgs> = {
   args: {
     locString: '3R:22693140..22699809',
     genome: 'fly',
-    divId: 'viewerFlyExample3',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly9: StoryObj<StaticArgs> = {
   args: {
     locString: '2R:23974972..23989001',
     genome: 'fly',
-    divId: 'viewerFlyExample4',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly10: StoryObj<StaticArgs> = {
   args: {
     locString: '3R:22693140..22699809',
     genome: 'fly',
-    divId: 'viewerFlyExample5',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
     variantFilter: ['FB:FBal0265700', 'FB:FBal0265699'],
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly11: StoryObj<StaticArgs> = {
   args: {
     locString: '2R:18614210..18615018',
     genome: 'fly',
-    divId: 'viewerFlyExample6',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
     variantFilter: ['FB:FBal0325512'],
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }
 
 export const Fly12: StoryObj<StaticArgs> = {
   args: {
     locString: 'X:2023822..2043557',
     genome: 'fly',
-    divId: 'viewerFlyExample7',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
     variantFilter: ['FB:FBal0212726'],
-  },
+    ncListUrlTemplate,
+    vcfTabixUrl,
+  } satisfies StaticArgs,
 }

src/stories/MouseApollo.stories.ts

@@ -14,70 +14,62 @@ export const Mouse1: StoryObj<ApolloArgs> = {
   args: {
     locString: '18:11035719..11058885',
     genome: 'mouse',
-    divId: 'viewerMouseExample1',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Mouse2: StoryObj<ApolloArgs> = {
   args: {
     locString: '18:11042037..11052567',
     genome: 'mouse',
-    divId: 'viewerMouseExample5',
     type: TRACK_TYPE.ISOFORM,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Mouse3: StoryObj<ApolloArgs> = {
   args: {
     locString: '17:46007760..46041588',
     genome: 'mouse',
-    divId: 'viewerMouseExample4',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Mouse4: StoryObj<ApolloArgs> = {
   args: {
     locString: '11:69550420..69563869',
     genome: 'mouse',
-    divId: 'viewerMouseExample3',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Mouse5: StoryObj<ApolloArgs> = {
   args: {
     locString: '3:115707662..115717830',
     genome: 'mouse',
-    divId: 'viewerMouseExample2',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Mouse6: StoryObj<ApolloArgs> = {
   args: {
     locString: '6:113619452..113636198',
     genome: 'mouse',
-    divId: 'viewerMouseExample1',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Mouse7: StoryObj<ApolloArgs> = {
   args: {
     locString: '6:113619452..113636198',
     genome: 'mouse',
-    divId: 'viewerMouseExample1NoLabel',
     type: TRACK_TYPE.ISOFORM_EMBEDDED_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }
 
 export const Mouse8: StoryObj<ApolloArgs> = {
   args: {
     locString: '6:113619452..113636198',
     genome: 'mouse',
-    divId: 'viewerMouseExample1NoLabelAnd',
     type: TRACK_TYPE.ISOFORM_AND_VARIANT,
-  },
+  } satisfies ApolloArgs,
 }