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base repository: GMOD/jbrowse-components
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base: 0db14d9342656215238474b398b91ebe44c5fad6
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head repository: GMOD/jbrowse-components
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compare: 4ed7170f784ebc4f6547b8aa3d198ffa59423f4b
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Showing with 5 additions and 5 deletions.
  1. +5 −5 website/docs/tutorials/embed_linear_genome_view/03_assemblies.md
10 changes: 5 additions & 5 deletions website/docs/tutorials/embed_linear_genome_view/03_assemblies.md
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Original file line number Diff line number Diff line change
@@ -81,9 +81,9 @@ tab-separated list of aliases for that name.

### Running the `jbrowse` command

We can create a JBrowse CLI to create a JBrowse Web config file, which we can
use to get the assembly for JBrowse Linear Genome View. We create a config file
with an assembly (or add an assembly to an existing config file) with the
We can use JBrowse CLI to create a JBrowse Web config file, which we can use to
get the assembly for JBrowse Linear Genome View. We create a config file with an
assembly (or add an assembly to an existing config file) with the
`jbrowse add-assembly` command. Go ahead and run `jbrowse add-assembly --help`
to see all the options available.

@@ -99,7 +99,7 @@ jbrowse add-assembly https://s3.amazonaws.com/jbrowse.org/genomes/GRCh38/fasta/G
--skipCheck
```

This will create a file called "config.json". Go ahead and open that file up. In
This will create a file called `config.json`. Go ahead and open that file up. In
it, you will see an entry called "assemblies". The first (and only) entry in
that list is our assembly. You can see the name, alias, sequence, and reference
name aliases we specified in our command. If for some reason the index files
@@ -172,4 +172,4 @@ Then add an import to your "index.html" adding this data:
</html>
```

Keep the config.json around for now, as we'll use it in the next step as well.
Keep the `config.json` around for now, as we'll use it in the next step as well.