From 45646881c8af77a2744c4eafdc8f90424ff6b898 Mon Sep 17 00:00:00 2001 From: David Thompson Date: Mon, 10 Jun 2024 12:30:43 +1200 Subject: [PATCH 1/5] Updating to solvis 0.11.1, solvis-store 2.0.3, nzshm-model 0.4.0. Also adding Python 3.11 as a supported language version. --- poetry.lock | 2473 +++++++++++++++++++++++++++--------------------- pyproject.toml | 14 +- setup.cfg | 3 +- 3 files changed, 1411 insertions(+), 1079 deletions(-) diff --git a/poetry.lock b/poetry.lock index 1083610..78a1c02 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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3.10: py310 3.9: py39, format, lint, build From c74d83c0ebc85caa5512c89ae8f4a089a886fb99 Mon Sep 17 00:00:00 2001 From: Chris Chamberlain Date: Mon, 10 Jun 2024 14:22:39 +1200 Subject: [PATCH 2/5] found the offending solvis API changes; --- solvis_graphql_api/composite_solution/cached.py | 4 ++-- .../composite_solution/composite_rupture_detail.py | 2 +- .../composite_solution/composite_rupture_sections.py | 9 +++++---- 3 files changed, 8 insertions(+), 7 deletions(-) diff --git a/solvis_graphql_api/composite_solution/cached.py b/solvis_graphql_api/composite_solution/cached.py index c5ec65c..67e29f0 100644 --- a/solvis_graphql_api/composite_solution/cached.py +++ b/solvis_graphql_api/composite_solution/cached.py @@ -198,7 +198,7 @@ def matched_rupture_sections_gdf( tic1 = time.perf_counter() log.debug('matched_rupture_sections_gdf(): time to load fault system solution: %2.3f seconds' % (tic1 - tic0)) - df0 = fss.ruptures_with_rates + df0 = fss.ruptures_with_rupture_rates # attribute filters df0 = df0 if not max_mag else df0[df0.Magnitude <= max_mag] @@ -282,7 +282,7 @@ def fault_section_aggregates_gdf( tic2 = time.perf_counter() log.debug('fault_section_aggregates_gdf(): time to filter rupture sections: %2.3f seconds' % (tic2 - tic1)) - fsr = fss.fault_sections_with_rates + fsr = fss.fault_sections_with_rupture_rates fsr = fsr[fsr['Rupture Index'].isin(df0['Rupture Index'].unique())] tic3 = time.perf_counter() diff --git a/solvis_graphql_api/composite_solution/composite_rupture_detail.py b/solvis_graphql_api/composite_solution/composite_rupture_detail.py index 639ae40..3ee0d42 100644 --- a/solvis_graphql_api/composite_solution/composite_rupture_detail.py +++ b/solvis_graphql_api/composite_solution/composite_rupture_detail.py @@ -23,7 +23,7 @@ @lru_cache def rupture_detail(model_id: str, fault_system: str, rupture_index: int): - sr = get_composite_solution(model_id)._solutions[fault_system].ruptures_with_rates + sr = get_composite_solution(model_id)._solutions[fault_system].ruptures_with_rupture_rates return sr[sr['Rupture Index'] == rupture_index] diff --git a/solvis_graphql_api/composite_solution/composite_rupture_sections.py b/solvis_graphql_api/composite_solution/composite_rupture_sections.py index 90abffb..c656d2f 100644 --- a/solvis_graphql_api/composite_solution/composite_rupture_sections.py +++ b/solvis_graphql_api/composite_solution/composite_rupture_sections.py @@ -224,13 +224,14 @@ def resolve_fault_surfaces(root, info, *args, **kwargs): fault_sections_gdf['stroke-width'] = stroke_width fault_sections_gdf['stroke-opacity'] = stroke_opacity + log.debug( f"columns: {fault_sections_gdf.columns}" ) fault_sections_gdf = fault_sections_gdf.drop( columns=[ 'rate_weighted_mean.max', 'rate_weighted_mean.min', 'rate_weighted_mean.mean', - "SlipRate", - "SlipRateStdDev", + 'Target Slip Rate', + 'Target Slip Rate StdDev' ] ) # import solvis @@ -275,8 +276,8 @@ def resolve_fault_traces(root, info, *args, **kwargs): 'rate_weighted_mean.max', 'rate_weighted_mean.min', 'rate_weighted_mean.mean', - "SlipRate", - "SlipRateStdDev", + 'Target Slip Rate', + 'Target Slip Rate StdDev' ] ) # import solvis From a903bfb4e381ac7d2757326ecee0017875d09d4d Mon Sep 17 00:00:00 2001 From: David Thompson Date: Mon, 10 Jun 2024 14:35:17 +1200 Subject: [PATCH 3/5] (Black being opinionated) --- .../composite_solution/composite_rupture_sections.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/solvis_graphql_api/composite_solution/composite_rupture_sections.py b/solvis_graphql_api/composite_solution/composite_rupture_sections.py index c656d2f..9952529 100644 --- a/solvis_graphql_api/composite_solution/composite_rupture_sections.py +++ b/solvis_graphql_api/composite_solution/composite_rupture_sections.py @@ -224,14 +224,14 @@ def resolve_fault_surfaces(root, info, *args, **kwargs): fault_sections_gdf['stroke-width'] = stroke_width fault_sections_gdf['stroke-opacity'] = stroke_opacity - log.debug( f"columns: {fault_sections_gdf.columns}" ) + log.debug(f"columns: {fault_sections_gdf.columns}") fault_sections_gdf = fault_sections_gdf.drop( columns=[ 'rate_weighted_mean.max', 'rate_weighted_mean.min', 'rate_weighted_mean.mean', 'Target Slip Rate', - 'Target Slip Rate StdDev' + 'Target Slip Rate StdDev', ] ) # import solvis @@ -277,7 +277,7 @@ def resolve_fault_traces(root, info, *args, **kwargs): 'rate_weighted_mean.min', 'rate_weighted_mean.mean', 'Target Slip Rate', - 'Target Slip Rate StdDev' + 'Target Slip Rate StdDev', ] ) # import solvis From 09572536304cbd3b9c054d45c59307c52e5f4208 Mon Sep 17 00:00:00 2001 From: David Thompson Date: Mon, 10 Jun 2024 17:32:53 +1200 Subject: [PATCH 4/5] Improving typing information on composite_solution/cached.py (#49) --- .../composite_solution/cached.py | 41 +++++++++++++------ 1 file changed, 29 insertions(+), 12 deletions(-) diff --git a/solvis_graphql_api/composite_solution/cached.py b/solvis_graphql_api/composite_solution/cached.py index 67e29f0..5b47f10 100644 --- a/solvis_graphql_api/composite_solution/cached.py +++ b/solvis_graphql_api/composite_solution/cached.py @@ -5,7 +5,7 @@ import time from functools import lru_cache from pathlib import Path -from typing import Any, Callable, Iterable, Iterator, List, Set, Tuple, Union +from typing import Any, Callable, Iterable, Iterator, List, Set, Tuple, Union, TYPE_CHECKING import geopandas as gpd import nzshm_model @@ -16,6 +16,10 @@ from .filter_set_logic_options import SetOperationEnum +if TYPE_CHECKING: + import shapely.geometry.polygon.Polygon + from nzshm_model.source_logic_tree.logic_tree import SourceLogicTree + log = logging.getLogger(__name__) FAULT_SECTION_LIMIT = 1e4 @@ -25,15 +29,16 @@ @lru_cache -def get_location_polygon(radius_km, lon, lat): +def get_location_polygon(radius_km: float, lon: float, lat: float) -> "shapely.geometry.polygon.Polygon": return solvis.geometry.circle_polygon(radius_m=radius_km * 1000, lon=lon, lat=lat) @lru_cache def parent_fault_names( - sol: InversionSolutionProtocol, sort: Union[None, Callable[[Iterable], List]] = sorted + sol: InversionSolutionProtocol, sort: Union[None, Callable[[Iterable[str]], Iterable[str]]] = sorted ) -> List[str]: - return solvis.parent_fault_names(sol) + fault_names: List[str] = solvis.parent_fault_names(sol) + return fault_names @lru_cache @@ -58,8 +63,8 @@ def get_composite_solution(model_id: str) -> solvis.CompositeSolution: def get_rupture_ids_for_fault_names_stored( - model_id: str, fault_system: str, fault_names: Iterable[str], filter_set_options -) -> Iterator[int]: + model_id: str, fault_system: str, fault_names: Iterable[str], filter_set_options: Tuple[Any] +) -> Set[int]: log.info('get_rupture_ids_for_fault_names_stored: %s %s %s' % (model_id, fault_system, fault_names)) filter_set_options_dict = dict(filter_set_options) fss = get_fault_system_solution_for_model(model_id, fault_system) @@ -67,14 +72,20 @@ def get_rupture_ids_for_fault_names_stored( assert len(ruptset_ids) == 1 rupture_set_id = ruptset_ids[0] union = False if filter_set_options_dict["multiple_faults"] == SetOperationEnum.INTERSECTION else True - return get_fault_name_rupture_ids(rupture_set_id, fault_names, union) + + rupture_id_set: Set[int] = get_fault_name_rupture_ids(rupture_set_id, fault_names, union) + return rupture_id_set -def get_fault_system_solution_for_model(model_id, fault_system): +def get_fault_system_solution_for_model( + model_id: str, fault_system: str +) -> "nzshm_model.source_logic_tree.logic_tree.FaultSystemLogicTree": current_model = nzshm_model.get_model_version(model_id) slt = current_model.source_logic_tree() - def get_fss(slt, fault_system): + def get_fss( + slt: "SourceLogicTree", fault_system: str + ) -> "nzshm_model.source_logic_tree.logic_tree.FaultSystemLogicTree": for fss in slt.fault_system_lts: if fss.short_name == fault_system: return fss @@ -86,7 +97,10 @@ def get_fss(slt, fault_system): def get_rupture_ids_for_location_radius( - fault_system_solution, location_ids, radius_km, filter_set_options: Tuple[Any] + fault_system_solution: InversionSolutionProtocol, + location_ids: Iterable[str], + radius_km: float, + filter_set_options: Tuple[Any], ) -> Set[int]: log.info('get_rupture_ids_for_location_radius: %s %s %s' % (fault_system_solution, radius_km, location_ids)) filter_set_options_dict = dict(filter_set_options) @@ -130,9 +144,10 @@ def get_rupture_ids_for_location_radius_stored( union = False if filter_set_options_dict["multiple_locations"] == SetOperationEnum.INTERSECTION else True # print("filter_dataframe_by_radius_stored", radius_km) # print("get_rupture_ids_for_location_radius_stored", radius_km) - return get_location_radius_rupture_ids( + rupture_ids: Iterator[int] = get_location_radius_rupture_ids( rupture_set_id=rupture_set_id, locations=location_ids, radius=radius_km, union=union ) + return rupture_ids @lru_cache @@ -141,7 +156,9 @@ def get_rupture_ids_for_parent_fault(fault_system_solution: InversionSolutionPro def get_rupture_ids_for_fault_names( - fault_system_solution, corupture_fault_names, filter_set_options: Tuple[Any] + fault_system_solution: InversionSolutionProtocol, + corupture_fault_names: Iterable[str], + filter_set_options: Tuple[Any], ) -> Set[int]: filter_set_options_dict = dict(filter_set_options) fss = fault_system_solution From e58ae4a4bec11c46c1a1152c0ac844286ed9ba9c Mon Sep 17 00:00:00 2001 From: David Thompson Date: Wed, 12 Jun 2024 11:46:14 +1200 Subject: [PATCH 5/5] =?UTF-8?q?parent=5Ffault=5Fnames=20passes=20through?= =?UTF-8?q?=20sorting=20parameter=20Bump=20version:=200.8.5=20=E2=86=92=20?= =?UTF-8?q?0.8.6=20CHANGELOG=20for=200.8.6?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .bumpversion.cfg | 2 +- CHANGELOG.md | 19 ++++++++++++++++--- package.json | 2 +- pyproject.toml | 2 +- solvis_graphql_api/__init__.py | 2 +- .../composite_solution/cached.py | 2 +- 6 files changed, 21 insertions(+), 8 deletions(-) diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 142b1b5..158c3e7 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.8.5 +current_version = 0.8.6 commit = True tag = True diff --git a/CHANGELOG.md b/CHANGELOG.md index 0319cb8..a5a4749 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,18 @@ # Changelog +## [0.8.6] - 2024-06-12 +### Added + - More type hinting for composite_solution/cached.py + - Testing against Python 3.10, 3.11 +### Changed + - Update to use solvis 0.11.1 + - Update to use solvis-store 2.0.3 + - Update to use nzshm-model 0.4.0 +### Removed + - Testing against Python 3.7, 3.8 +### Fixed + - parent_fault_names passes through sorting parameter + ## [0.8.5] - 2023-08-02 ### Changed - solvis-store == v2.0.2 @@ -9,7 +22,7 @@ ## [0.8.4] - 2023-07-19 ### Added - version config for package.json - + ## [0.8.3] - 2023-07-19 ### Added - new filter_set_options argument @@ -18,7 +31,7 @@ ### Changed - updated upstream solvis libs - removed monkeypatching for solvis/solvis-store - + ## [0.8.2] - 2023-07-04 ### Changed - added list support for corupture queries @@ -93,7 +106,7 @@ ## [0.2.0] - 2022-??-?? ### Added - - InversionSolutoin + - InversionSolutoin ## [0.0.1] - 2022-??-?? Initial release of the NZ NSHM 2022 revision diff --git a/package.json b/package.json index f5ab2f6..5462279 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "solvis-graphql-api", - "version": "0.8.5", + "version": "0.8.6", "description": "A graphql API for analysis and geojson visualisation from NZSHM Inversion Solutions.", "dependencies": { "serverless": "^3.30.1", diff --git a/pyproject.toml b/pyproject.toml index c74258f..32e5dc3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "solvis-graphql-api" -version = "0.8.5" +version = "0.8.6" description = "Graphql API for analysis of opensha modular Inversion Solutions" authors = ["Chris Chamberlain "] license = "AGPL3" diff --git a/solvis_graphql_api/__init__.py b/solvis_graphql_api/__init__.py index ec534ac..ee350ec 100644 --- a/solvis_graphql_api/__init__.py +++ b/solvis_graphql_api/__init__.py @@ -2,4 +2,4 @@ __author__ = """GNS Science""" __email__ = 'chrisbc@artisan.co.nz' -__version__ = '0.8.5' +__version__ = '0.8.6' diff --git a/solvis_graphql_api/composite_solution/cached.py b/solvis_graphql_api/composite_solution/cached.py index 5b47f10..6adc4fc 100644 --- a/solvis_graphql_api/composite_solution/cached.py +++ b/solvis_graphql_api/composite_solution/cached.py @@ -37,7 +37,7 @@ def get_location_polygon(radius_km: float, lon: float, lat: float) -> "shapely.g def parent_fault_names( sol: InversionSolutionProtocol, sort: Union[None, Callable[[Iterable[str]], Iterable[str]]] = sorted ) -> List[str]: - fault_names: List[str] = solvis.parent_fault_names(sol) + fault_names: List[str] = solvis.parent_fault_names(sol, sort) return fault_names