pyproject.toml

[project]
  name = "galax"
  description = "Galactic Dynamics in Jax."
  dynamic = ["version"]
  license = { text = "MIT License" }
  readme = "README.md"
  requires-python = ">=3.11"
  authors = [
    { name = "galax maintainers", email = "nstarman@users.noreply.github.com" },
    { name = "Adrian Price-Whelan", email = "adrianmpw@gmail.com" },
    { name = "Jake Nibauer", email = "jnibauer@princeton.edu" },
    { name = "Nathaniel Starkman", email = "nstarman@users.noreply.github.com" },
  ]
  classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python",
    "Topic :: Scientific/Engineering",
    "Typing :: Typed",
  ]
  dependencies = [
    "astropy>=6.1.4",
    "beartype>=0.19",
    "coordinax>=0.14.0",
    "dataclassish >= 0.3",
    "diffrax>=0.6",
    "equinox>=0.11.8",
    "is-annotated>=1.0",
    "jax>=0.4.35",
    "jaxlib>=0.4.35",
    "jaxtyping>=0.2.34",
    "optional-dependencies>=0.3",
    "packaging>=24.1",
    "plotting_backends >= 0.1",
    "quax>=0.0.5",
    "quaxed>=0.6.7",
    "typing-extensions>=4.11",
    "unxt>=0.23.2",
    "xmmutablemap>=0.1",
    "zeroth>=0.1",
]

  [project.optional-dependencies]
    # All runtime dependencies
    all = ["galax[interop-all,plot-all]"]
    # Interoperability dependencies
    interop-all = [
      "galax[interop-astropy]",
      "galax[interop-gala]",
      "galax[interop-galpy]",
    ]
    interop-astropy = ["astropy>=6.1"]
    interop-gala = ["gala>=1.9", "galax[interop-astropy]"]
    interop-galpy = ["galax[interop-astropy]", "galpy >= 1.8"]
    # TODO: agama
    plot-all        = ["galax[plot-matplotlib]"]
    plot-matplotlib = ["matplotlib>=3.8"]

  [project.urls]
    "Bug Tracker" = "https://github.com/GalacticDynamics/galax/issues"
    Changelog     = "https://github.com/GalacticDynamics/galax/releases"
    Discussions   = "https://github.com/GalacticDynamics/galax/discussions"
    Homepage      = "https://github.com/GalacticDynamics/galax"


[build-system]
  build-backend = "hatchling.build"
  requires      = ["hatch-vcs", "hatchling"]


[dependency-groups]
  # Development dependencies
  dev = [
    "ipykernel>=6.29.5",
    { include-group = "docs" },
    { include-group = "test-all" },
  ]
  # Documentation dependencies
  docs = [
    "furo>=2024.8.6",
    "myst_parser>=4.0",
    "sphinx>=8.1",
    "sphinx_autodoc_typehints>=2.5",
    "sphinx_copybutton>=0.5.2",
  ]
  # Test dependencies
  test-all = [
    { include-group = "test" },
    { include-group = "test-mpl" },
  ]
  test = [
    "nox>=2024.10.9",
    "pre-commit>=4.0.1",
    "pytest-arraydiff>=0.6.1",
    "pytest-cov>=5",
    "pytest>=8.3",
    "sybil>=8.0.0",
  ]
  test-mpl = ["pytest-mpl>=0.17.0"]


[tool.hatch]
  build.hooks.vcs.version-file     = "src/galax/_version.py"
  metadata.allow-direct-references = true
  version.source                   = "vcs"


[tool.coverage]
  report.exclude_also = [
    # Have to re-enable the standard pragma
    'pragma: no cover',
    # Ignore type-checking stuff
    '\.\.\.',
    'if TYPE_CHECKING:',
    'if typing.TYPE_CHECKING:',
    # Ignore contents of abstract methods
    '@abc.abstractmethod',
    '@abstractmethod',
  ]
  run.omit = ["*/utils/_boundinstance.py"]
  run.source = ["galax"]


[tool.mypy]
  python_version = "3.11"

  disallow_incomplete_defs = true
  disallow_untyped_defs = true
  exclude = [
    '(^/)docs/',      # docs
    '(^|/)tests/',    # tests
    '^conftest\.py$', # nox test configuration
  ]
  strict = true
  warn_redundant_casts = true
  warn_unreachable = true
  warn_unused_configs = true

  disable_error_code = ["no-redef"]                                             # <- plum multiple dispatch
  enable_error_code  = ["ignore-without-code", "redundant-expr", "truthy-bool"]

  [[tool.mypy.overrides]]
    disable_error_code = ["name-defined"] # <- jaxtyping
    module             = "galax.*"

  [[tool.mypy.overrides]]
    ignore_missing_imports = true
    module = [
      "astropy.*",
      "beartype.*",
      "diffrax.*",
      "equinox.*",
      "hypothesis.*",
      "jax.*",
      "jax_cosmo.*",
      "jaxtyping.*",
      "numpy.*",
      "scipy.*",
      "sympy.*",
      "sympy2jax.*",
    ]


[tool.pylint]
  ignore-paths = [".*/_version.py"]
  messages_control.disable = [
    "design",
    "fixme",
    "function-redefined",
    "import-outside-toplevel",
    "invalid-name",                  # ruff N80*
    "line-too-long",
    "missing-module-docstring",
    "protected-access",              # ruff SLF001
    "unnecessary-ellipsis",
    "unnecessary-lambda-assignment", # ruff E731
    "unnecessary-pass",              # handled by ruff
    "unused-argument",               # handled by ruff
    "useless-import-alias",
    "wrong-import-order",            # handled by ruff
    "wrong-import-position",
  ]
  py-version = "3.11"
  reports.output-format = "colorized"
  similarities.ignore-imports = "yes"


[tool.pytest.ini_options]
  addopts = [
    "--arraydiff",
    "--showlocals",
    "--strict-config",
    "--strict-markers",
    "-ra",
  ]
  filterwarnings = [
    "error",
    "ignore:Attribute s is deprecated:DeprecationWarning",                                             # from Sybil
    "ignore:Passing arguments 'a':DeprecationWarning",                                                 # TODO: from diffrax
    "ignore:ast\\.Str is deprecated:DeprecationWarning",                                               # from Sybil
    "ignore:auto\\-close\\(\\)ing of figures upon backend switching is deprecated:DeprecationWarning",
    "ignore:jax\\.core\\.pp_eqn_rules is deprecated:DeprecationWarning",
    "ignore:numpy\\.ndarray size changed:RuntimeWarning",
    "ignore:unhashable type:FutureWarning",                                                            # TODO: from diffrax
  ]
  log_cli_level = "INFO"
  markers = [
    "serial",
    "slow: marks tests as slow (deselect with '-m \"not slow\"')",
  ]
  minversion = "6.0"
  testpaths = ["docs", "src/galax", "tests/"]
  xfail_strict = true


[tool.ruff]

  [tool.ruff.lint]
    extend-select = ["ALL"]
    ignore = [
      "ANN101",  # Missing type annotation for self in method
      "ANN102",  # Missing type annotation for cls in classmethod
      "ANN401",  # Dynamically typed expressions (typing.Any) are disallowed in `*args`
      "COM812",  # Missing trailing comma in Python 3.6+
      "D105",    # Missing docstring in magic method
      "D107",    # Missing docstring in `__init__`
      "D203",    # 1 blank line required before class docstring
      "D213",    # Multi-line docstring summary should start at the second line
      "E741",    # Ambiguous variable name
      "F722",    # Syntax error in forward annotation  <- jaxtyping
      "F811",    # Redefinition <- plum multiple dispatch
      "F821",    # undefined name  <- jaxtyping
      "FIX002",  # Line contains TODO, consider resolving the issue
      "ISC001",  # Implicit string concatenation <- ruff-format
      "N80",     # Naming conventions.
      "PD",      # pandas-vet
      "PLC0414", # Import alias does not rename original package
      "PLR",     # Design related pylint codes
      "PYI041",  # Use `float` instead of `int | float` <- beartype is more strict
      "TCH00",   # Move into a type-checking block
      "TD002",   # Missing author in TODO
      "TD003",   # Missing issue link on the line following this TODO
      "UP037",   # Remove quote from type annotation  <- jaxtyping
    ]

    [tool.ruff.lint.per-file-ignores]
      "__init__.py" = ["F403"]
      "__init__.pyi" = ["F401", "F403"]
      "docs/conf.py" = [
        "A001",   # Variable `copyright` is shadowing a Python builtin
        "INP001", # implicit namespace package
      ]
      "notebooks/**" = ["ANN", "D103", "FBT", "T201"]
      "noxfile.py" = ["ERA001", "T20"]
      "tests/**" = [
        "ANN",
        "ARG001",
        "ARG002",
        "D10",
        "E731",
        "ERA001", # Found commented-out code  # TODO: remove this
        "FBT001", # Boolean-typed positional argument in a function definition
        "INP001",
        "RET504",
        "S101",
        "S301",
        "SLF001",
        "T20",
        "TID252", # Relative imports from parent modules are banned
      ]

    [tool.ruff.lint.flake8-type-checking]
      exempt-modules = []

    [tool.ruff.lint.isort]
      combine-as-imports = true
      extra-standard-library = ["typing_extensions"]
      known-first-party = [
        "coordinax",
        "dataclassish",
        "galactic_dynamics_interoperability",
        "is_annotated",
        "optional_dependencies",
        "plotting_backends",
        "quaxed",
        "unxt",
        "xmmutablemap",
        "zeroth",
      ]
      known-local-folder = ["galax"]

    [tool.ruff.lint.pydocstyle]
      convention = "numpy"


[tool.uv]
  dev-dependencies = [
    "ipykernel>=6.29.5",
    "pytest-arraydiff>=0.6.1",
    "pytest>=8.3.3",
    "sybil>=8.0.0",
  ]