-
Notifications
You must be signed in to change notification settings - Fork 0
/
DESCRIPTION
24 lines (24 loc) · 1.06 KB
/
DESCRIPTION
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
Package: borealis
Type: Package
Title: Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution
Version: 1.1.3
Authors@R: person(given = "Garrett",
family = "Jenkinson",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0003-2548-098X"))
Depends: R (>= 4.2.0), Biobase
Imports: doParallel, snow, purrr, plyr, foreach, gamlss, gamlss.dist, bsseq,
methods, DSS, R.utils, utils, stats, ggplot2, cowplot, dplyr, rlang,
GenomicRanges
Description: Borealis is an R library performing outlier analysis for
count-based bisulfite sequencing data. It detectes outlier
methylated CpG sites from bisulfite sequencing
(BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This
can be useful for rare disease diagnoses.
License: GPL-3
Encoding: UTF-8
Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, annotatr, tidyr,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
VignetteBuilder: knitr
biocViews: Sequencing, Coverage, DNAMethylation, DifferentialMethylation