[pre-commit.ci] pre-commit autoupdate (#3991)

* [pre-commit.ci] pre-commit autoupdate
* Pin GitHub Actions to full length commit SHA
* Set MAMBA_ROOT_PREFIX env var properly on Windows GMT build

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Wei Ji <[email protected]>

Author: pre-commit-ci[bot]

.github/workflows/benchmarks.yml

@@ -48,7 +48,7 @@ jobs:
 
       # Install Micromamba with conda-forge dependencies
       - name: Setup Micromamba
-        uses: mamba-org/[email protected]
+        uses: mamba-org/setup-micromamba@b09ef9b599704322748535812ca03efb2625677b # v2.0.5
         with:
           environment-name: pygmt
           cache-environment: true
@@ -84,7 +84,7 @@ jobs:
 
       # Run the benchmark tests
       - name: Run benchmarks
-        uses: CodSpeedHQ/[email protected]
+        uses: CodSpeedHQ/action@0010eb0ca6e89b80c88e8edaaa07cfe5f3e6664d # v3.5.0
         with:
           # 'bash -el -c' is needed to use the custom shell.
           # See https://github.com/CodSpeedHQ/action/issues/65.

.github/workflows/cache_data.yaml

@@ -46,7 +46,7 @@ jobs:
 
       # Install Micromamba with conda-forge dependencies
       - name: Setup Micromamba
-        uses: mamba-org/[email protected]
+        uses: mamba-org/setup-micromamba@b09ef9b599704322748535812ca03efb2625677b # v2.0.5
         with:
           environment-name: pygmt
           create-args: >-

.github/workflows/check-links.yml

@@ -40,7 +40,7 @@ jobs:
 
     - name: Link Checker
       id: lychee
-      uses: lycheeverse/[email protected]
+      uses: lycheeverse/lychee-action@82202e5e9c2f4ef1a55a3d02563e1cb6041e5332 # v2.4.1
       with:
         fail: false  # Don't fail action on broken links
         output: /tmp/lychee-out.md

.github/workflows/ci_docs.yml

@@ -83,7 +83,7 @@ jobs:
 
       # Install Micromamba with conda-forge dependencies
       - name: Setup Micromamba
-        uses: mamba-org/[email protected]
+        uses: mamba-org/setup-micromamba@b09ef9b599704322748535812ca03efb2625677b # v2.0.5
         with:
           environment-name: pygmt
           cache-environment: true

.github/workflows/ci_doctests.yaml

@@ -45,7 +45,7 @@ jobs:
 
       # Install Micromamba with conda-forge dependencies
       - name: Setup Micromamba
-        uses: mamba-org/[email protected]
+        uses: mamba-org/setup-micromamba@b09ef9b599704322748535812ca03efb2625677b # v2.0.5
         with:
           environment-name: pygmt
           create-args: >-

.github/workflows/ci_tests.yaml

@@ -116,7 +116,7 @@ jobs:
 
       # Install Micromamba with conda-forge dependencies
       - name: Setup Micromamba
-        uses: mamba-org/[email protected]
+        uses: mamba-org/setup-micromamba@b09ef9b599704322748535812ca03efb2625677b # v2.0.5
         with:
           environment-name: pygmt
           cache-environment: true
@@ -151,7 +151,7 @@ jobs:
           GH_TOKEN: ${{ github.token }}
 
       - name: Install uv
-        uses: astral-sh/[email protected]
+        uses: astral-sh/setup-uv@bd01e18f51369d5a26f1651c3cb451d3417e3bba # v6.3.1
         with:
           activate-environment: true
           python-version: ${{ matrix.python-version }}
@@ -183,7 +183,7 @@ jobs:
 
       # Upload coverage to Codecov
       - name: Upload coverage to Codecov
-        uses: codecov/[email protected]
+        uses: codecov/codecov-action@18283e04ce6e62d37312384ff67231eb8fd56d24 # v5.4.3
         if: success() || failure()
         with:
           use_oidc: true

.github/workflows/ci_tests_dev.yaml

@@ -60,7 +60,7 @@ jobs:
 
       # Install Micromamba with conda-forge dependencies
       - name: Setup Micromamba
-        uses: mamba-org/[email protected]
+        uses: mamba-org/setup-micromamba@b09ef9b599704322748535812ca03efb2625677b # v2.0.5
         with:
           environment-name: pygmt
           cache-environment: true
@@ -131,7 +131,7 @@ jobs:
           cmake -G Ninja .. ^
             -DCMAKE_INSTALL_PREFIX=%GMT_INSTALL_DIR% ^
             -DCMAKE_BUILD_TYPE=Release ^
-            -DCMAKE_PREFIX_PATH=${{ env.MAMBA_ROOT_PREFIX }}\envs\pygmt\Library ^
+            -DCMAKE_PREFIX_PATH=%MAMBA_ROOT_PREFIX%\envs\pygmt\Library ^
             -DGMT_ENABLE_OPENMP=TRUE ^
             -DGMT_USE_THREADS=TRUE
           cmake --build .

.github/workflows/ci_tests_legacy.yaml

@@ -54,7 +54,7 @@ jobs:
 
       # Install Micromamba with conda-forge dependencies
       - name: Setup Micromamba
-        uses: mamba-org/[email protected]
+        uses: mamba-org/setup-micromamba@b09ef9b599704322748535812ca03efb2625677b # v2.0.5
         with:
           environment-name: pygmt
           create-args: >-

.github/workflows/dvc-diff.yml

@@ -30,10 +30,10 @@ jobs:
         persist-credentials: false
 
     - name: Setup data version control (DVC)
-      uses: iterative/[email protected]
+      uses: iterative/setup-dvc@2508d098217d24eef3c0e8d7bc0ce7b9ca0723c3 # v1.1.2
 
     - name: Setup continuous machine learning (CML)
-      uses: iterative/[email protected]
+      uses: iterative/setup-cml@f714cd201b7183852dd6f94192b34e7618717560 # v2.0.0
 
     # Produce the markdown diff report, which should look like:
     # ## Summary of changed images

.github/workflows/publish-to-pypi.yml

@@ -99,7 +99,7 @@ jobs:
         path: dist/
 
     - name: Publish distribution 📦 to TestPyPI
-      uses: pypa/[email protected]
+      uses: pypa/gh-action-pypi-publish@76f52bc884231f62b9a034ebfe128415bbaabdfc # v1.12.4
       with:
         repository-url: https://test.pypi.org/legacy/
 
@@ -123,4 +123,4 @@ jobs:
         path: dist/
 
     - name: Publish distribution 📦 to PyPI
-      uses: pypa/[email protected]
+      uses: pypa/gh-action-pypi-publish@76f52bc884231f62b9a034ebfe128415bbaabdfc # v1.12.4