ubuntu.yml

# dingo : a python library for metabolic networks sampling and analysis
# dingo is part of GeomScale project

# Copyright (c) 2021-2022 Vissarion Fisikopoulos

# Licensed under GNU LGPL.3, see LICENCE file

name: dingo-ubuntu

on: [push, pull_request]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        #python-version: [2.7, 3.5, 3.6, 3.7, 3.8]
        python-version: [3.8]

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Load submodules
      run: |
        git submodule update --init;
    - name: Download and unzip the boost library
      run: |
        wget -O boost_1_76_0.tar.bz2 https://boostorg.jfrog.io/artifactory/main/release/1.76.0/source/boost_1_76_0.tar.bz2;
        tar xjf boost_1_76_0.tar.bz2;
        rm boost_1_76_0.tar.bz2;
    - name: Install dependencies
      run: |
        sudo apt-get install libsuitesparse-dev;
        curl -sSL https://install.python-poetry.org | python3 - --version 1.3.2;
        poetry --version
        poetry show -v
        source $(poetry env info --path)/bin/activate
        poetry install;
        pip3 install numpy scipy;
    - name: Run tests
      run: |
        poetry run python3 tests/fba.py;
        poetry run python3 tests/full_dimensional.py;
        poetry run python3 tests/max_ball.py;
        poetry run python3 tests/scaling.py;
        poetry run python3 tests/sampling.py;
        poetry run python3 tests/sampling_no_multiphase.py;
        # currently we do not test with gurobi
        # python3 tests/fast_implementation_test.py;

        #run all tests
        #python -m unittest discover test
        #TODO: use pytest