From 6cece2d363ea5370500b14160f2e79b9da8fdc22 Mon Sep 17 00:00:00 2001 From: Christian Diener Date: Fri, 15 Mar 2024 08:51:43 +0100 Subject: [PATCH] fix typo --- Dockerfile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index 9e8fb74..69ac4fd 100644 --- a/Dockerfile +++ b/Dockerfile @@ -24,7 +24,7 @@ RUN apt-get update \ curl \ procps \ libcurl4-openssl-dev \ - libsbmbl5-dev \ + libsbml5-dev \ parallel RUN echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \ @@ -37,7 +37,7 @@ ENV LANG en_US.UTF-8 RUN R -e 'install.packages(c("data.table", "stringr", "getopt", "reshape2", "doParallel", "foreach", "R.utils", "stringi", "glpkAPI", "CHNOSZ", "jsonlite", "remotes"))' RUN R -e 'install.packages("BiocManager"); BiocManager::install("Biostrings")' RUN R -e 'remotes::install_url("https://cran.r-project.org/src/contrib/Archive/sybil/sybil_2.2.0.tar.gz")' -RUN R -e 'remotes::install_url("https://cran.r-project.org/src/contrib/Archive/sybilSBML/sybilSBML_3.1.2.tar.gz")' +RUN R -e 'remotes::install_github("SysBioChalmers/sybil-SBML")' RUN cd /opt && git clone https://github.com/jotech/gapseq RUN cd /usr/bin && ln -s /opt/gapseq/gapseq