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b/study-level-metadata-schema/schema-cedar/json/study-metadata-schema-cedar-template.json index 4abc6dc..d1ea060 100644 --- a/study-level-metadata-schema/schema-cedar/json/study-metadata-schema-cedar-template.json +++ b/study-level-metadata-schema/schema-cedar/json/study-metadata-schema-cedar-template.json @@ -1,5 +1,4 @@ { - "@id": "https://repo.metadatacenter.org/templates/dce33a12-e93f-43d9-a777-c6d23b051487", "@type": "https://schema.metadatacenter.org/core/Template", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -28,50 +27,50 @@ }, "type": "object", "title": "Heal study core metadata template schema", - "description": "Heal study core metadata template schema generated by the CEDAR Template Editor 2.6.19", + "description": "Heal study core metadata template schema generated by the CEDAR Template Editor 2.6.54", "_ui": { "pages": [], "order": [ "Minimal Info", "Metadata Location", - "Citation", - "Contacts and Registrants", "Data Availability", - "Findings", - "Study Translation Focus", + "Study Translational Focus", "Study Type", - "Human Treatment Apply", - "Human Condition Apply", - "Human Subjects Apply", - "Data" + "Human Subject Applicability", + "Human Treatment Applicability", + "Human Condition Applicability", + "Data", + "documentation_link" ], "propertyLabels": { - "Minimal Info": "Minimal Info", - "Metadata Location": "Metadata Location", - "Citation": "Citation", - "Contacts and Registrants": "Contacts and Registrants", "Data Availability": "Data Availability", - "Findings": "Findings", - "Study Translation Focus": "Study Translation Focus", + "Human Condition Applicability": "Human Condition Applicability", + "Data": "Data", + "Metadata Location": "Metadata Location", + "Human Treatment Applicability": "Human Treatment Applicability", + "Study Translational Focus": "Study Translational Focus", + "documentation_link": "documentation_link", + "Minimal Info": "Minimal Info", "Study Type": "Study Type", - "Human Treatment Apply": "Human Treatment Apply", - "Human Condition Apply": "Human Condition Apply", - "Human Subjects Apply": "Human Subjects Apply", - "Data": "Data" + "Human Subject Applicability": "Human Subject Applicability" }, "propertyDescriptions": { - "Minimal Info": "", "Metadata Location": "", "Citation": "", "Contacts and Registrants": "", "Data Availability": "", - "Findings": "", - "Study Translation Focus": "", + "Study Translational Focus": "", "Study Type": "", - "Human Treatment Apply": "", - "Human Condition Apply": "", - "Human Subjects Apply": "", - "Data": "" + "Human Treatment Applicability": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION'", + "Human Condition Applicability": "", + "Human Subjects Applicability": "", + "Data": "", + "Human Subject Applicability": "", + "Minimal Info": "", + "Minimal Info1": "", + "Study Type1": "", + "Human Subject Applicability1": "", + "documentation_link": "For guidance on completing this form, please visit: https://bit.ly/HEAL-CEDAR" } }, "properties": { @@ -230,64 +229,49 @@ } } }, - "Minimal Info": { + "Data Availability": { "enum": [ - "https://schema.metadatacenter.org/properties/4fa04f5c-c3fc-4093-ab50-fcb5330e3d26" + "https://schema.metadatacenter.org/properties/727c0bb9-5ccc-4e57-9c60-e904fb6554ae" ] }, - "Metadata Location": { + "Human Condition Applicability": { "enum": [ - "https://schema.metadatacenter.org/properties/959a97a9-82a3-44d3-958d-34a2b7a68864" + "https://schema.metadatacenter.org/properties/7616106d-3048-4de2-b195-2e6b96dd8d9f" ] }, - "Citation": { + "Data": { "enum": [ - "https://schema.metadatacenter.org/properties/83fa43ce-8ec0-46ee-a032-660392da7b52" + "https://schema.metadatacenter.org/properties/b89b71da-4429-4b05-9800-609c1b66e5fd" ] }, - "Contacts and Registrants": { + "Metadata Location": { "enum": [ - "https://schema.metadatacenter.org/properties/194c0cd7-6d2b-434b-9bd6-e8116ebeb333" + "https://schema.metadatacenter.org/properties/6d22bcde-0cfc-448b-9730-5983f700a734" ] }, - "Data Availability": { + "Human Treatment Applicability": { "enum": [ - "https://schema.metadatacenter.org/properties/8ac21357-0eb6-4111-b8f8-bae453e23184" + "https://schema.metadatacenter.org/properties/7a1ab684-856f-4542-94b9-df8822e61703" ] }, - "Findings": { + "Study Translational Focus": { "enum": [ - "https://schema.metadatacenter.org/properties/5f776f79-e579-4e17-bf6f-188d67656f64" + "https://schema.metadatacenter.org/properties/ef34c3bb-f165-4e4f-8ee1-e6961f88c2e3" ] }, - "Study Translation Focus": { + "Minimal Info": { "enum": [ - "https://schema.metadatacenter.org/properties/316b81ef-7562-4b0f-80a1-3bed06f725d5" + "https://schema.metadatacenter.org/properties/d6a42006-032c-4a10-aef9-036056581fae" ] }, "Study Type": { "enum": [ - "https://schema.metadatacenter.org/properties/c462ad8a-9916-4bcf-92ea-415500f588b3" - ] - }, - "Human Treatment Apply": { - "enum": [ - "https://schema.metadatacenter.org/properties/e22e41a0-cde3-456d-9a71-45a1a0097479" + "https://schema.metadatacenter.org/properties/e69d3d11-31ca-4e4d-ac89-d8fbc0fa7869" ] }, - "Human Condition Apply": { + "Human Subject Applicability": { "enum": [ - "https://schema.metadatacenter.org/properties/26bf24d9-f8aa-4db1-adf7-0e873cbd5e6f" - ] - }, - "Human Subjects Apply": { - "enum": [ - "https://schema.metadatacenter.org/properties/123266fd-f24b-42a9-a26a-93036c6ce8a6" - ] - }, - "Data": { - "enum": [ - "https://schema.metadatacenter.org/properties/a8f0984e-1358-454b-b2a9-43405efb5c14" + "https://schema.metadatacenter.org/properties/7b3f1088-2469-426c-af83-13570e305f5c" ] } }, @@ -303,18 +287,15 @@ "pav:createdBy", "pav:lastUpdatedOn", "oslc:modifiedBy", - "Minimal Info", - "Metadata Location", - "Citation", - "Contacts and Registrants", "Data Availability", - "Findings", - "Study Translation Focus", + "Human Condition Applicability", + "Data", + "Metadata Location", + "Human Treatment Applicability", + "Study Translational Focus", + "Minimal Info", "Study Type", - "Human Treatment Apply", - "Human Condition Apply", - "Human Subjects Apply", - "Data" + "Human Subject Applicability" ], "additionalProperties": false }, @@ -385,7 +366,7 @@ ], "format": "uri" }, - "Minimal Info": { + "Data Availability": { "@type": "https://schema.metadatacenter.org/core/TemplateElement", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -413,50 +394,113 @@ } }, "type": "object", - "title": "Minimal info element schema", - "description": "Minimal info element schema generated by the CEDAR Template Editor 2.6.19", + "title": "Data availability element schema", + "description": "Data availability element schema generated by the CEDAR Template Editor 2.6.19", "_ui": { "order": [ - "study_name", - "study_description", - "study_nickname" + "produce_data", + "data_available", + "data_restricted", + "data_collection_status", + "data_release_status", + "data_collection_start_date", + "data_collection_finish_date", + "data_release_start_date", + "data_release_finish_date", + "produce_other" ], "propertyLabels": { - "study_name": "study_name", - "study_description": "study_description", - "study_nickname": "study_nickname" + "data_available": "data_available", + "data_collection_status": "data_collection_status", + "data_release_status": "data_release_status", + "data_collection_start_date": "data_collection_start_date", + "data_collection_finish_date": "data_collection_finish_date", + "data_release_start_date": "data_release_start_date", + "data_release_finish_date": "data_release_finish_date", + "data_restricted": "data_restricted", + "produce_data": "produce_data", + "produce_other": "produce_other" }, "propertyDescriptions": { - "study_name": "The title or name of the study. For NIH-funded studies, this will generally be equivalent to the NIH application ID title.", - "study_description": "A description of or abstract for the study. For NIH-funded studies, this will generally be equivalent to the NIH application ID abstract text.", - "study_nickname": "Study nickname, alternative title, abbreviation, or acronym (e.g. many people shorten the name of the HEAL Adolescent Brain Cognitive Development study to ABCD)." + "data_available": "If study will collect/produce data, indicate whether all, some, or none of the data will be made available", + "data_collection_status": "If study will collect/produce data, indicate whether the study has not started, has started, or has finished data collection/production activities", + "data_release_status": "If the study will collect/produce data and make at least some of the data available, indicate whether the study has not started, has started, or has finished data release activities.", + "data_collection_start_date": "If the study will collect/produce data, indicate the anticipated date when data collection/production will begin", + "data_collection_finish_date": "If the study will collect/produce data, indicate the anticipated date when data collection/production will end (data collection/production is complete).", + "data_release_start_date": "If study will collect/produce data and make at least some of the data available, indicate the anticipated date when first data will be released.", + "data_release_finish_date": "If study will produce data and make at least some of the data available, indicate the anticipated date when last data will be released (data release is complete).", + "data_restricted": "If study will collect/produce data, and make at least some of that data available, indicate whether all, some, or none of the data will have restriction(s) on access beyond acknowledgement and signing of a minimal DSA", + "produce_data": "Indicate whether or not the study will collect/produce (primary or secondary) data.", + "produce_other": "Indicate whether or not the study will produce shareable products other than data." } }, "properties": { "@context": { "type": "object", "properties": { - "study_name": { + "data_available": { "enum": [ - "https://schema.metadatacenter.org/properties/e5f0a1a1-8232-43e1-b89d-d178efe5cc71" + "https://schema.metadatacenter.org/properties/540cf2c4-012e-40be-a191-4498474918f8" ] }, - "study_description": { + "data_collection_status": { "enum": [ - "https://schema.metadatacenter.org/properties/4511545c-3a17-4a41-ae33-67be643faf4b" + "https://schema.metadatacenter.org/properties/74cd5963-7261-439c-83e2-a6329b16d285" ] }, - "study_nickname": { + "data_release_status": { "enum": [ - "https://schema.metadatacenter.org/properties/ac7ee813-4406-4c77-b30a-b88e13d0fb15" + "https://schema.metadatacenter.org/properties/4018cbfd-e055-4e69-8c23-9b2b47dd0191" + ] + }, + "data_collection_start_date": { + "enum": [ + "https://schema.metadatacenter.org/properties/1da1c9af-ae90-4efe-8ab2-85797d9e0e82" + ] + }, + "data_collection_finish_date": { + "enum": [ + "https://schema.metadatacenter.org/properties/1a39e732-9682-4963-9f80-de08ed504173" + ] + }, + "data_release_start_date": { + "enum": [ + "https://schema.metadatacenter.org/properties/82bba606-0597-4080-983d-a4fc3341b211" + ] + }, + "data_release_finish_date": { + "enum": [ + "https://schema.metadatacenter.org/properties/236c55ff-14c7-4123-adf2-5019eb5c8344" + ] + }, + "data_restricted": { + "enum": [ + "https://schema.metadatacenter.org/properties/6d5d1e5e-1f88-430f-b815-e8414a384f35" + ] + }, + "produce_data": { + "enum": [ + "https://schema.metadatacenter.org/properties/a05f2427-6240-4c0c-a29e-4a7a6b43276c" + ] + }, + "produce_other": { + "enum": [ + "https://schema.metadatacenter.org/properties/e46f791a-85ec-4aed-a7cc-24a34664b79b" ] } }, "additionalProperties": false, "required": [ - "study_name", - "study_description", - "study_nickname" + "data_available", + "data_collection_status", + "data_release_status", + "data_collection_start_date", + "data_collection_finish_date", + "data_release_start_date", + "data_release_finish_date", + "data_restricted", + "produce_data", + "produce_other" ] }, "@id": { @@ -480,7 +524,7 @@ } ] }, - "study_name": { + "data_available": { "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -515,13 +559,25 @@ } }, "type": "object", - "title": "study_name field schema", - "description": "study_name field schema generated by the CEDAR Template Editor 2.6.18", + "title": "data_available field schema", + "description": "data_available field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { - "inputType": "textfield" + "inputType": "list" }, "_valueConstraints": { - "requiredValue": false + "requiredValue": false, + "multipleChoice": false, + "literals": [ + { + "label": "none" + }, + { + "label": "some" + }, + { + "label": "all" + } + ] }, "properties": { "@type": { @@ -557,19 +613,19 @@ "required": [ "@value" ], - "schema:name": "study_name", - "schema:description": "The title or name of the study. For NIH-funded studies, this will generally be equivalent to the NIH application ID title.", - "pav:createdOn": "2022-06-02T13:59:21-07:00", + "schema:name": "data_available", + "schema:description": "If study will collect/produce data, indicate whether all, some, or none of the data will be made available", + "pav:createdOn": "2022-06-02T15:04:33-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T13:59:21-07:00", + "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "skos:prefLabel": "Study Title or Name", - "@id": "https://repo.metadatacenter.org/template-fields/c56d077f-508f-433f-a3ae-deca560dfeb7", + "@id": "https://repo.metadatacenter.org/template-fields/61419009-5ff4-4a50-b7f1-01aaea8da133", + "skos:prefLabel": "Will the study make data available?", "$schema": "http://json-schema.org/draft-04/schema#" }, - "study_description": { + "data_collection_status": { "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -604,13 +660,25 @@ } }, "type": "object", - "title": "study_description field schema", - "description": "study_description field schema generated by the CEDAR Template Editor 2.6.18", + "title": "data_collection_status field schema", + "description": "data_collection_status field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { - "inputType": "textfield" + "inputType": "list" }, "_valueConstraints": { - "requiredValue": false + "requiredValue": false, + "multipleChoice": false, + "literals": [ + { + "label": "not started" + }, + { + "label": "started" + }, + { + "label": "finished" + } + ] }, "properties": { "@type": { @@ -646,19 +714,19 @@ "required": [ "@value" ], - "schema:name": "study_description", - "schema:description": "A description of or abstract for the study. For NIH-funded studies, this will generally be equivalent to the NIH application ID abstract text.", - "pav:createdOn": "2022-06-02T13:59:21-07:00", + "schema:name": "data_collection_status", + "schema:description": "If study will collect/produce data, indicate whether the study has not started, has started, or has finished data collection/production activities", + "pav:createdOn": "2022-06-02T15:04:33-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T13:59:21-07:00", + "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "skos:prefLabel": "Study Description or Abstract", - "@id": "https://repo.metadatacenter.org/template-fields/e19296b2-c89c-4eef-a737-f6efc56b6a3b", + "skos:prefLabel": "Has data collection/production started?", + "@id": "https://repo.metadatacenter.org/template-fields/68cd9194-f6b1-4aa9-89d4-b59add064a5d", "$schema": "http://json-schema.org/draft-04/schema#" }, - "study_nickname": { + "data_release_status": { "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -693,13 +761,25 @@ } }, "type": "object", - "title": "study_nickname field schema", - "description": "study_nickname field schema generated by the CEDAR Template Editor 2.6.18", + "title": "data_release_status field schema", + "description": "data_release_status field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { - "inputType": "textfield" + "inputType": "list" }, "_valueConstraints": { - "requiredValue": false + "requiredValue": false, + "multipleChoice": false, + "literals": [ + { + "label": "not started" + }, + { + "label": "started" + }, + { + "label": "finished" + } + ] }, "properties": { "@type": { @@ -735,145 +815,110 @@ "required": [ "@value" ], - "schema:name": "study_nickname", - "schema:description": "Study nickname, alternative title, abbreviation, or acronym (e.g. many people shorten the name of the HEAL Adolescent Brain Cognitive Development study to ABCD).", - "pav:createdOn": "2022-06-02T13:59:21-07:00", + "schema:name": "data_release_status", + "schema:description": "If the study will collect/produce data and make at least some of the data available, indicate whether the study has not started, has started, or has finished data release activities.", + "pav:createdOn": "2022-06-02T15:04:33-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T13:59:21-07:00", + "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "skos:prefLabel": "Study Nickname or Alternative Title", - "@id": "https://repo.metadatacenter.org/template-fields/6b479c1e-2cb0-42e9-9eda-01df915d5dff", + "skos:prefLabel": "Has data release started?", + "@id": "https://repo.metadatacenter.org/template-fields/d8213256-2292-4aa9-8218-2eeace923877", "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "schema:name": "Minimal Info", - "schema:description": "", - "required": [ - "@context", - "@id", - "study_name", - "study_description", - "study_nickname" - ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "pav:version": "0.0.1", - "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/232c87ee-251e-455d-80ce-37a97c8ff1f9", - "@id": "https://repo.metadatacenter.org/template-elements/c90bcbd9-608a-48b3-8cba-7347260b84e5", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "Metadata Location": { - "@type": "https://schema.metadatacenter.org/core/TemplateElement", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "Metadata location element schema", - "description": "Metadata location element schema generated by the CEDAR Template Editor 2.6.19", - "_ui": { - "order": [ - "Metadata Location - Details", - "Data Repositories", - "cedar_study_level_metadata_template_instance_ID", - "other_study_websites" - ], - "propertyLabels": { - "cedar_study_level_metadata_template_instance_ID": "cedar_study_level_metadata_template_instance_ID", - "other_study_websites": "other_study_websites", - "Data Repositories": "Data Repositories", - "Metadata Location - Details": "Metadata Location - Details" - }, - "propertyDescriptions": { - "cedar_study_level_metadata_template_instance_ID": "ID of the CEDAR HEAL Study-level Core Metadata Template instance created for this study.", - "other_study_websites": "Other websites officially associated with this study that provide additional information about the study.", - "Data Repositories": "", - "Metadata Location - Details": "" - } - }, - "properties": { - "@context": { + "data_collection_start_date": { + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, "type": "object", + "title": "data_collection_start_date field schema", + "description": "data_collection_start_date field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "temporal", + "temporalGranularity": "day" + }, + "_valueConstraints": { + "requiredValue": false, + "temporalType": "xsd:date" + }, "properties": { - "cedar_study_level_metadata_template_instance_ID": { - "enum": [ - "https://schema.metadatacenter.org/properties/c559e744-f706-4d38-af73-e4c9c3b5eceb" - ] - }, - "other_study_websites": { - "enum": [ - "https://schema.metadatacenter.org/properties/b823702e-2e9e-4b3a-ad0d-c375bc65846e" + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } ] }, - "Data Repositories": { - "enum": [ - "https://schema.metadatacenter.org/properties/71d2d39b-7358-4a55-8e85-96dd2156491d" + "@value": { + "type": [ + "string", + "null" ] }, - "Metadata Location - Details": { - "enum": [ - "https://schema.metadatacenter.org/properties/a350aa4a-08f9-4144-925b-b3321fb8de1c" + "rdfs:label": { + "type": [ + "string", + "null" ] } }, - "additionalProperties": false, "required": [ - "cedar_study_level_metadata_template_instance_ID", - "other_study_websites", - "Data Repositories", - "Metadata Location - Details" - ] - }, - "@id": { - "type": "string", - "format": "uri" - }, - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] + "@value" + ], + "schema:name": "data_collection_start_date", + "schema:description": "If the study will collect/produce data, indicate the anticipated date when data collection/production will begin", + "pav:createdOn": "2022-06-02T15:04:33-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "skos:prefLabel": "Date when first data will be collected/produced (Anticipated)", + "@id": "https://repo.metadatacenter.org/template-fields/ce0fcddb-1798-4d03-9b35-7c8b544e7206", + "$schema": "http://json-schema.org/draft-04/schema#" }, - "cedar_study_level_metadata_template_instance_ID": { + "data_collection_finish_date": { "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -908,13 +953,15 @@ } }, "type": "object", - "title": "cedar_study_level_metadata_template_instance_ID field schema", - "description": "cedar_study_level_metadata_template_instance_ID field schema generated by the CEDAR Template Editor 2.6.19", + "title": "data_collection_finish_date field schema", + "description": "data_collection_finish_date field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { - "inputType": "textfield" + "inputType": "temporal", + "temporalGranularity": "day" }, "_valueConstraints": { - "requiredValue": false + "requiredValue": false, + "temporalType": "xsd:date" }, "properties": { "@type": { @@ -950,608 +997,130 @@ "required": [ "@value" ], - "schema:name": "cedar_study_level_metadata_template_instance_ID", - "schema:description": "ID of the CEDAR HEAL Study-level Core Metadata Template instance created for this study.", - "pav:createdOn": "2022-06-02T15:01:26-07:00", + "schema:name": "data_collection_finish_date", + "schema:description": "If the study will collect/produce data, indicate the anticipated date when data collection/production will end (data collection/production is complete).", + "pav:createdOn": "2022-06-02T15:04:33-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:01:26-07:00", + "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "skos:prefLabel": "CEDAR Study-level Metadata Template Instance ID", - "@id": "https://repo.metadatacenter.org/template-fields/12b6937b-eea3-4e7e-b82c-dd0371d9a09c", + "skos:prefLabel": "Date when last data will be collected/produced (Anticipated)", + "@id": "https://repo.metadatacenter.org/template-fields/4e0180d6-7958-4136-82f3-a6d7bcfe41e7", "$schema": "http://json-schema.org/draft-04/schema#" }, - "other_study_websites": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } + "data_release_start_date": { + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" }, - "title": "other_study_websites field schema", - "description": "other_study_websites field schema generated by the CEDAR Template Editor 2.6.19", - "_ui": { - "inputType": "link" + "schema:description": { + "@type": "xsd:string" }, - "_valueConstraints": { - "requiredValue": false + "skos:prefLabel": { + "@type": "xsd:string" }, - "properties": { - "@type": { - "oneOf": [ - { + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, + "type": "object", + "title": "data_release_start_date field schema", + "description": "data_release_start_date field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "temporal", + "temporalGranularity": "day" + }, + "_valueConstraints": { + "requiredValue": false, + "temporalType": "xsd:date" + }, + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { "type": "string", "format": "uri" }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - }, - "@id": { - "type": "string", - "format": "uri" - } - }, - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:01:26-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:01:26-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "other_study_websites", - "schema:description": "Other websites officially associated with this study that provide additional information about the study.", - "skos:prefLabel": "Other Study-Associated Websites", - "@id": "https://repo.metadatacenter.org/template-fields/f65e7112-2b10-4a5a-b4a9-6932e3f16a38", - "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "Data Repositories": { - "type": "array", - "schema:identifier": "data_repositories", - "minItems": 1, - "items": { - "type": "object", - "@id": "https://repo.metadatacenter.org/template-elements/d984a18e-2b08-4c4d-a999-e8c2aa6e3f04", - "@type": "https://schema.metadatacenter.org/core/TemplateElement", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "title": "Data Repositories field schema", - "description": "Data Repositories field schema generated by the CEDAR Template Editor 2.6.19", - "_ui": { - "order": [ - "repository_name", - "repository_study_ID", - 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usually a number or combination of standard letters and numbers (e.g. study identifiers on ClinicalTrials.gov are generally in the format: NCT12345678).", - "pav:createdOn": "2022-05-24T14:27:38-07:00", - "pav:createdBy": "https://metadatacenter.org/users/03b4dbe7-c96b-463d-ad0b-0cec057a6a35", - "pav:lastUpdatedOn": "2022-05-24T14:27:38-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/03b4dbe7-c96b-463d-ad0b-0cec057a6a35", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Study ID assigned by Repository", - "@id": "https://repo.metadatacenter.org/template-fields/3b5c68c7-3018-4428-aded-84b2e68351f2", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "repository_persistent_ID": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "repository_persistent_ID field schema", - "description": "repository_persistent_ID field schema generated by the CEDAR Template Editor 2.6.19", - "_ui": { - "inputType": "textfield" - }, - "_valueConstraints": { - "requiredValue": false - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "repository_persistent_ID", - "schema:description": "Unique persistent identifier assigned to the study at that repository; usually a doi.", - "pav:createdOn": "2022-05-24T14:27:38-07:00", - "pav:createdBy": "https://metadatacenter.org/users/03b4dbe7-c96b-463d-ad0b-0cec057a6a35", - "pav:lastUpdatedOn": "2022-05-24T14:27:38-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/03b4dbe7-c96b-463d-ad0b-0cec057a6a35", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Repository-branded Study Persistent Identifier", - "@id": "https://repo.metadatacenter.org/template-fields/48ff750d-5ff2-421b-bd15-3dafcaf58acd", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "repository_citation": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "repository_citation field schema", - "description": "repository_citation field schema generated by the CEDAR Template Editor 2.6.19", - "_ui": { - "inputType": "textfield" - }, - "_valueConstraints": { - "requiredValue": false - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "repository_citation", - "schema:description": "The official citation the repository requests be used to cite the study/data when the study/data is discovered/accessed via the repository; will likely follow the format: Principal Investigator(s). Title. Place-of-Distribution and Distributor, Date-of-Distribution. DOI. version (where distributor will be the repository name).Help Text", - "pav:createdOn": "2022-05-24T14:27:38-07:00", - "pav:createdBy": "https://metadatacenter.org/users/03b4dbe7-c96b-463d-ad0b-0cec057a6a35", - "pav:lastUpdatedOn": "2022-05-24T14:27:38-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/03b4dbe7-c96b-463d-ad0b-0cec057a6a35", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Study citation at Repository", - "@id": "https://repo.metadatacenter.org/template-fields/40c6e273-32f1-43b0-aee3-5f90c7fe4105", - "$schema": "http://json-schema.org/draft-04/schema#" - } + "@value": { + "type": [ + "string", + "null" + ] }, - "required": [ - "@context", - "@id", - "repository_name", - "repository_study_ID", - "repository_persistent_ID", - "repository_citation" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:01:26-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:01:26-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "Data Repositories", - "schema:description": "", - "pav:version": "0.0.1", - "bibo:status": "bibo:draft", - "$schema": "http://json-schema.org/draft-04/schema#" - } + "rdfs:label": { + "type": [ + "string", + "null" + ] + } + }, + "required": [ + "@value" + ], + "schema:name": "data_release_start_date", + "schema:description": "If study will collect/produce data and make at least some of the data available, indicate the anticipated date when first data will be released.", + "pav:createdOn": "2022-06-02T15:04:33-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "skos:prefLabel": "Date when first data will be released (Anticipated)", + "@id": "https://repo.metadatacenter.org/template-fields/5852f9ed-fd3d-4031-bcdb-f3be8d611fed", + "$schema": "http://json-schema.org/draft-04/schema#" }, - "Metadata Location - Details": { - "@id": "https://repo.metadatacenter.org/template-elements/baf3980d-ecfe-40b0-829e-e3df785e747a", - "@type": "https://schema.metadatacenter.org/core/TemplateElement", + "data_release_finish_date": { + "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", "pav": "http://purl.org/pav/", "bibo": "http://purl.org/ontology/bibo/", "oslc": "http://open-services.net/ns/core#", "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", "schema:name": { "@type": "xsd:string" }, "schema:description": { "@type": "xsd:string" }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, "pav:createdOn": { "@type": "xsd:dateTime" }, @@ -1566,56 +1135,17 @@ } }, "type": "object", - "title": "Metadata location - details element schema", - "description": "Metadata location - details element schema generated by the CEDAR Template Editor 2.6.19", + "title": "data_release_finish_date field schema", + "description": "data_release_finish_date field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { - 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] - }, - "nih_reporter_link": { - "enum": [ - "https://schema.metadatacenter.org/properties/a8ffe6d6-cf0a-4b20-bb43-87d1b2d87825" - ] - }, - "clinical_trials_study_id": { - "enum": [ - "https://schema.metadatacenter.org/properties/9d95277e-7a59-4f0f-97a6-ab1d929ebee7" - ] - } - }, - "additionalProperties": false, - "required": [ - "nih_application_id", - "nih_reporter_link", - "clinical_trials_study_id" - ] - }, - "@id": { - "type": "string", - "format": "uri" - }, "@type": { "oneOf": [ { @@ -1633,1265 +1163,516 @@ } ] }, - "nih_application_id": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - 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one item in this array per grant/award or funding source", - "pav:version": "0.0.1", - "bibo:status": "bibo:draft", - "$schema": "http://json-schema.org/draft-04/schema#" - } + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } + }, + "required": [ + "@value" + ], + "schema:name": "produce_other", + "schema:description": "Indicate whether or not the study will produce shareable products other than data.", + "pav:createdOn": "2022-06-02T15:04:33-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "skos:prefLabel": "Will study produce shareable products other than data?", + "@id": "https://repo.metadatacenter.org/template-fields/089c4eb6-887f-4496-8a8c-07228a6f12f0", + "$schema": "http://json-schema.org/draft-04/schema#" + } + }, + "schema:name": "Data Availability", + "schema:description": "", + "required": [ + "@context", + "@id", + "data_available", + "data_collection_status", + "data_release_status", + "data_collection_start_date", + "data_collection_finish_date", + "data_release_start_date", + "data_release_finish_date", + "data_restricted", + "produce_data", + "produce_other" + ], + "pav:createdOn": "2024-02-01T06:42:00-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "pav:version": "0.0.1", + "bibo:status": "bibo:published", + "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/98806ebf-6a4c-4bd5-8624-cd9d190cdfe4", + "@id": "https://repo.metadatacenter.org/template-elements/d133b6e9-2842-489f-b803-9ef121d1bbd0", + "$schema": "http://json-schema.org/draft-04/schema#" + }, + "Human Condition Applicability": { + "@type": "https://schema.metadatacenter.org/core/TemplateElement", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, + "type": "object", + "title": "Human condition applicability element schema", + "description": "Human condition applicability element schema generated by the CEDAR Template Editor 2.6.19", + "_ui": { + "order": [ + "condition_category", + "condition_investigation_stage_or_type", + "pain_causal_condition", + "pain_treatment_or_study_target_condition", + "all_treatment_or_study_target_condition", + "all_outcome_condition", + "all_other_condition" + ], + "propertyLabels": { + "condition_category": "condition_category", + "condition_investigation_stage_or_type": "condition_investigation_stage_or_type", + "pain_causal_condition": "pain_causal_condition", + "pain_treatment_or_study_target_condition": "pain_treatment_or_study_target_condition", + "all_treatment_or_study_target_condition": "all_treatment_or_study_target_condition", + "all_outcome_condition": "all_outcome_condition", + "all_other_condition": "all_other_condition" + }, + "propertyDescriptions": { + "condition_category": "Considering the study in a translational context, to humans with which broad category(ies) of opioid use or pain conditions are the study results intended to apply. Choose as many as apply.", + "condition_investigation_stage_or_type": "Each HEAL study will be doing work that is relevant to a human opioid and/or pain condition. What does this study intend to learn about the condition? If the study is investigating a treatment, intervention, or solution, please choose 'Treatment of Condition'. Choose as many as apply.", + "pain_causal_condition": "If the study will be doing work that is relevant to a human PAIN condition category, is the study focusing on pain caused by a specific condition? e.g. Cancer, fibromyalgia, arthritis, occupational injury, sports injury, car accident, surgical procedure. If yes, please indicate the causal condition(s) here - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", + "pain_treatment_or_study_target_condition": "If the study will be doing work that is relevant to a human PAIN condition category, and the pain condition has a causal condition (specified above), is the study focusing its investigation on the causal condition, or on the pain resulting from the causal condition? e.g. In a study of effective treatments for fibromyalgia/fibromyalgia pain, is the study focused on fibromyalgia disease-modifying treatments, or on treatments that address the symptomology of pain? Choose as many as apply.", + "all_treatment_or_study_target_condition": "Considering the study in a translational context, to humans with which detailed type of opioid use or pain conditions are the study results intended to apply? Each HEAL study will be doing work that is relevant to a human opioid and/or pain condition; You indicated the broad category of condition(s) the study is focusing on or relevant to above. Here, please indicate the study focus condition(s) in detail. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", + "all_outcome_condition": "If the outcome condition(s) the study hopes to impact or measure is different than the treatment or study target condition (e.g. testing a disease-modifying fibromyaligia treatment but measuring depression, physical and social function, and neurologic pain such as headaches as the main outcomes). Please indicate the study outcome condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", + "all_other_condition": "If the study is measuring or tracking other human health conditions besides the treatment or study target condition and outcome condition, please indicate the other tracked/measured condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView" + } + }, + "properties": { + "@context": { + "type": "object", + "properties": { + "condition_category": { + "enum": [ + "https://schema.metadatacenter.org/properties/cd67d808-e00f-40e1-9ed8-b68567fc21b1" + ] + }, + "condition_investigation_stage_or_type": { + "enum": [ + "https://schema.metadatacenter.org/properties/b5ca5722-7979-4287-b8f8-140777d15450" + ] + }, + "pain_causal_condition": { + "enum": [ + "https://schema.metadatacenter.org/properties/f8f92f34-cc40-44e1-b7b3-900968ceade2" + ] + }, + "pain_treatment_or_study_target_condition": { + "enum": [ + "https://schema.metadatacenter.org/properties/91cb041e-88d6-4fa5-b9bb-00fb6c881a2d" + ] + }, + "all_treatment_or_study_target_condition": { + "enum": [ + "https://schema.metadatacenter.org/properties/96b2b7c0-8abc-4802-a52d-13d9bd35e243" + ] + }, + "all_outcome_condition": { + "enum": [ + "https://schema.metadatacenter.org/properties/c763ecf1-915b-4f1f-bca8-9288a30f08fc" + ] + }, + "all_other_condition": { + "enum": [ + "https://schema.metadatacenter.org/properties/55645641-6232-4b34-904a-ae05f918379a" + ] + } + }, + "additionalProperties": false, + "required": [ + "condition_category", + "condition_investigation_stage_or_type", + "pain_causal_condition", + "pain_treatment_or_study_target_condition", + "all_treatment_or_study_target_condition", + "all_outcome_condition", + "all_other_condition" + ] + }, + "@id": { + "type": "string", + "format": "uri" + }, + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] }, - "Investigators": { + "condition_category": { "type": "array", "minItems": 1, "items": { "type": "object", - "@id": "https://repo.metadatacenter.org/template-elements/e4dd1db5-45ed-40a2-8575-87ac94a6c725", - "@type": "https://schema.metadatacenter.org/core/TemplateElement", + "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", "pav": "http://purl.org/pav/", "bibo": "http://purl.org/ontology/bibo/", "oslc": "http://open-services.net/ns/core#", "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", "schema:name": { "@type": "xsd:string" }, "schema:description": { "@type": "xsd:string" }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, "pav:createdOn": { "@type": "xsd:dateTime" }, @@ -2905,74 +1686,66 @@ "@type": "@id" } }, - "title": "Investigators field schema", - "description": "Investigators field schema generated by the CEDAR Template Editor 2.6.18", + "title": "condition_category field schema", + "description": "condition_category field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { - "order": [ - "investigator_first_name", - "investigator_middle_initial", - "investigator_last_name", - "investigator_affiliation", - "Investigator Identifiers" - ], - "propertyLabels": { - "investigator_first_name": "investigator_first_name", - "investigator_middle_initial": "investigator_middle_initial", - "investigator_last_name": "investigator_last_name", - "investigator_affiliation": "investigator_affiliation", - "Investigator Identifiers": "Investigator Identifiers" - }, - "propertyDescriptions": { - "investigator_first_name": "First name of study primary or co-investigator.", - "investigator_middle_initial": "Middle initial of study primary or co-investigator.", - "investigator_last_name": "Last name of study primary or co-investigator.", - "investigator_affiliation": "Institutional affiliation of study primary or co-investigator", - "Investigator Identifiers": "Add a structured identifier(s) for the investigator; one item in this array per structured identifier; e.g. one item for providing ORCID, another for providing RAS passport." - } + "inputType": "list" }, - "properties": { - "@context": { - "type": "object", - "properties": { - "investigator_first_name": { - "enum": [ - "https://schema.metadatacenter.org/properties/e8829389-2b3a-4f2d-bc73-d3e6bc05b7aa" - ] - }, - "investigator_middle_initial": { - "enum": [ - "https://schema.metadatacenter.org/properties/e9d20c7f-3fb6-436b-8d3c-66eeeed7b774" - ] - }, - "investigator_last_name": { - "enum": [ - "https://schema.metadatacenter.org/properties/22e6e222-8701-4c51-a800-9d773ecb55c6" - ] - }, - "investigator_affiliation": { - "enum": [ - "https://schema.metadatacenter.org/properties/89b6df45-1a3c-4d8b-9675-a415830d839e" - ] - }, - "Investigator Identifiers": { - "enum": [ - "https://schema.metadatacenter.org/properties/37c21297-29fb-4bf0-8e63-c7636a8977ea" - ] - } + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": true, + "literals": [ + { + "label": "Opioid use and opioid use disorder" }, - "additionalProperties": false, - "required": [ - "investigator_first_name", - "investigator_middle_initial", - "investigator_last_name", - "investigator_affiliation", - "Investigator Identifiers" - ] - }, - "@id": { - "type": "string", - "format": "uri" - }, + { + "label": "Opioid use and opioid use disorder, primary occurrence" + }, + { + "label": "Opioid use and opioid use disorder, relapse" + }, + { + "label": "Opioid use and opioid use disorder, chronic" + }, + { + "label": "Opioid overdose" + }, + { + "label": "Opioid exposure" + }, + { + "label": "(Non-opioid) Substance use" + }, + { + "label": "Co-occurring (Opioid or Non-opioid) Substance use and Mental Health disorder" + }, + { + "label": "Pain" + }, + { + "label": "Pain, acute" + }, + { + "label": "Pain, chronic" + }, + { + "label": "Pain, acute to chronic transition" + }, + { + "label": "Pain, resulting from injury" + }, + { + "label": "Pain, resulting from surgery" + }, + { + "label": "Pain, resulting from chronic illness" + }, + { + "label": "Pain, idiopathic (unknown origin)" + } + ] + }, + "properties": { "@type": { "oneOf": [ { @@ -2990,1046 +1763,385 @@ } ] }, - "investigator_first_name": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "investigator_first_name field schema", - "description": "investigator_first_name field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "textfield" - }, - "_valueConstraints": { - "requiredValue": false - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "investigator_first_name", - "schema:description": "First name of study primary or co-investigator.", - "pav:createdOn": "2022-03-25T11:25:25-07:00", - "pav:createdBy": "https://metadatacenter.org/users/03b4dbe7-c96b-463d-ad0b-0cec057a6a35", - "pav:lastUpdatedOn": "2022-03-25T11:25:25-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/03b4dbe7-c96b-463d-ad0b-0cec057a6a35", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Investigator First Name", - "@id": "https://repo.metadatacenter.org/template-fields/b4cf3c96-7006-4e35-9dd6-d1ce9a3a623e", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "investigator_middle_initial": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } + }, + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2022-06-22T15:14:51-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-22T15:14:51-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "condition_category", + "schema:description": "Considering the study in a translational context, to humans with which broad category(ies) of opioid use or pain conditions are the study results intended to apply. 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What does this study intend to learn about the condition? If the study is investigating a treatment, intervention, or solution, please choose 'Treatment of Condition'. Choose as many as apply.", + "skos:prefLabel": "Opioid use and/or Pain condition - Investigation Stage or Type", + "@id": "https://repo.metadatacenter.org/template-fields/3f196959-a7d5-4a8e-81e2-29309487469b", "$schema": "http://json-schema.org/draft-04/schema#" } }, - "heal_funded_status": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" + "pain_causal_condition": { + "type": "array", + "minItems": 1, + "items": { + "type": "object", + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } }, - "pav:createdOn": { - "@type": "xsd:dateTime" + "title": "pain_causal_condition field schema", + "description": "pain_causal_condition field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "textfield" }, - "pav:createdBy": { - "@type": "@id" + "_valueConstraints": { + "requiredValue": false, + "ontologies": [ + { + "numTerms": 348658, + "acronym": "MESH", + "name": "Medical Subject Headings", + "uri": "https://data.bioontology.org/ontologies/MESH" + } + ], + "valueSets": [], + "classes": [], + "branches": [], + "multipleChoice": false }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + }, + "@id": { + "type": "string", + "format": "uri" + } }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "heal_funded_status field schema", - "description": "heal_funded_status field schema generated by the CEDAR Template Editor 2.6.19", - "_ui": { - "inputType": "radio" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": false, - "literals": [ - { - "label": "Yes" + "additionalProperties": false, + "pav:createdOn": "2022-06-22T15:14:51-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-22T15:14:51-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "pain_causal_condition", + "schema:description": "If the study will be doing work that is relevant to a human PAIN condition category, is the study focusing on pain caused by a specific condition? e.g. Cancer, fibromyalgia, arthritis, occupational injury, sports injury, car accident, surgical procedure. If yes, please indicate the causal condition(s) here - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", + "skos:prefLabel": "Pain - Causal condition", + "@id": "https://repo.metadatacenter.org/template-fields/fa823b52-84e9-41cc-9c8f-71d5b53a011f", + "$schema": "http://json-schema.org/draft-04/schema#" + } + }, + "pain_treatment_or_study_target_condition": { + "type": "array", + "minItems": 1, + "items": { + "type": "object", + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" }, - { - "label": "No" + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" } - ] - }, - "properties": { - "@type": { - "oneOf": [ + }, + "title": "pain_treatment_or_study_target_condition field schema", + "description": "pain_treatment_or_study_target_condition field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" + }, + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": true, + "literals": [ { - "type": "string", - "format": "uri" + "label": "Causal Condition" }, { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true + "label": "Pain" + }, + { + "label": "Pain, acute" + }, + { + "label": "Pain, chronic" } ] }, - "@value": { - "type": [ - "string", - "null" - ] + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "heal_funded_status", - "schema:description": "Whether or not the study is funded by the NIH HEAL initiative.", - "pav:createdOn": "2022-06-02T15:02:34-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:02:34-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Is this study HEAL-funded?", - "@id": "https://repo.metadatacenter.org/template-fields/2ac5908b-065a-4927-bc88-855864e3975c", - "$schema": "http://json-schema.org/draft-04/schema#" + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2022-06-22T15:14:51-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-22T15:14:51-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "pain_treatment_or_study_target_condition", + "schema:description": "If the study will be doing work that is relevant to a human PAIN condition category, and the pain condition has a causal condition (specified above), is the study focusing its investigation on the causal condition, or on the pain resulting from the causal condition? e.g. In a study of effective treatments for fibromyalgia/fibromyalgia pain, is the study focused on fibromyalgia disease-modifying treatments, or on treatments that address the symptomology of pain? Choose as many as apply.", + "skos:prefLabel": "Pain - Study treatment or target condition is causal condition or pain?", + "@id": "https://repo.metadatacenter.org/template-fields/7ad7efc7-90ba-4ba8-b2b2-b0f7b35cd528", + "$schema": "http://json-schema.org/draft-04/schema#" + } }, - "study_collection_status": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "study_collection_status field schema", - "description": "study_collection_status field schema generated by the CEDAR Template Editor 2.6.19", - "_ui": { - "inputType": "radio" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": false, - "literals": [ - { - "label": "Yes" - }, - { - "label": "No" - } - ] - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "study_collection_status", - "schema:description": "Whether or not the study is related to a study group or collection(s) by some administrative mechanism, or belongs to a group or collection of studies (e.g. SAMHSA performs a survey called the National Survey of Substance Abuse Treatment Services (N-SSATS) every year; each annual survey may be registered as a separate study that belongs to a collection called the N-SSATS collection).", - "pav:createdOn": "2022-06-02T15:02:34-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:02:34-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Does this study belong to a study group or collection?", - "@id": "https://repo.metadatacenter.org/template-fields/6bac2b27-90b4-4173-b46d-373c124e1667", - "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "schema:name": "Citation", - "schema:description": "", - "required": [ - "@context", - "@id", - "study_collections", - "Funding", - "Investigators", - "heal_funded_status", - "study_collection_status" - ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": { - "type": "object", - "properties": { - "@value": { - "type": [ - "string", - "null" - ] - }, - "@type": { - "type": "string", - "format": "uri" - } - }, - "required": [ - "@value" - ], - "additionalProperties": false - }, - "pav:version": "0.0.1", - "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/7b05b54b-5770-4abc-9caf-249c6e04c74d", - "@id": "https://repo.metadatacenter.org/template-elements/3c0401d6-54ae-4d56-aa3c-8f71150a1ae0", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "Contacts and Registrants": { - "@type": "https://schema.metadatacenter.org/core/TemplateElement", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "Contacts and registrants element schema", - "description": "Contacts and registrants element schema generated by the CEDAR Template Editor 2.6.19", - "_ui": { - "order": [ - "Contacts", - "Contacts and Registrants", - "Registrants" - ], - "propertyLabels": { - "Contacts": "Contacts", - "Contacts and Registrants": "Contacts and Registrants", - "Registrants": "Registrants" - }, - "propertyDescriptions": { - "Contacts": "Describe the contact person(s) for the study. This is the person(s) who should be contacted for questions about the study; will be auto-set as NIH contact PI(s) if NIH-funded; one item in this array per contact person.", - "Contacts and Registrants": "Describe the contact person(s) for the study. This is the person(s) who should be contacted for questions about the study; will be auto-set as NIH contact PI(s) if NIH-funded; one item in this array per contact person.", - "Registrants": "Describe the person(s) who will register the study on the HEAL Platform. This person(s) must be authorized to access the study registration page/process on the HEAL Platform; will be auto-set as NIH contact PI(s) if NIH-funded; one item in this array per registrant." - } - }, - "properties": { - "@context": { - "type": "object", - "properties": { - "Contacts": { - "enum": [ - "https://schema.metadatacenter.org/properties/9c97a43c-4869-4b8a-bf4c-0db852bc5d38" - ] - }, - "Contacts and Registrants": { - "enum": [ - "https://schema.metadatacenter.org/properties/9ae701d9-f63a-4882-9fe1-5c609c3957da" - ] - }, - "Registrants": { - "enum": [ - "https://schema.metadatacenter.org/properties/4cc9a060-77b2-4ecd-908e-d5a7d118865b" - ] - } - }, - "additionalProperties": false, - "required": [ - "Contacts", - "Contacts and Registrants", - "Registrants" - ] - }, - "@id": { - "type": "string", - "format": "uri" - }, - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "Contacts": { + "all_treatment_or_study_target_condition": { "type": "array", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/649fec0c-5d77-41f6-8c43-6a6185a900fe", - "schema:identifier": "contacts", "minItems": 1, "items": { "type": "object", - "@id": "https://repo.metadatacenter.org/template-elements/312cccfd-eddb-4749-a86b-f6e6bed7759f", - "@type": "https://schema.metadatacenter.org/core/TemplateElement", + "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", "pav": "http://purl.org/pav/", "bibo": "http://purl.org/ontology/bibo/", "oslc": "http://open-services.net/ns/core#", "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", "schema:name": { "@type": "xsd:string" }, "schema:description": { "@type": "xsd:string" }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, "pav:createdOn": { "@type": "xsd:dateTime" }, @@ -4043,74 +2155,27 @@ "@type": "@id" } }, - "title": "Contacts field schema", - "description": "Contacts field schema generated by the CEDAR Template Editor 2.6.18", + "title": "all_treatment_or_study_target_condition field schema", + "description": "all_treatment_or_study_target_condition field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { - "order": [ - "contact_first_name", - "contact_middle_initial", - "contact_last_name", - "contact_affiliation", - "contact-email" + "inputType": "textfield" + }, + "_valueConstraints": { + "requiredValue": false, + "ontologies": [ + { + "numTerms": 348658, + "acronym": "MESH", + "name": "Medical Subject Headings", + "uri": "https://data.bioontology.org/ontologies/MESH" + } ], - "propertyLabels": { - "contact-email": "contact-email", - "contact_middle_initial": "contact_middle_initial", - "contact_affiliation": "contact_affiliation", - "contact_first_name": "contact_first_name", - "contact_last_name": "contact_last_name" - }, - "propertyDescriptions": { - "contact-email": "Institutional email of study contact", - "contact_middle_initial": "Middle initial of study contact", - "contact_affiliation": "Institutional affiliation of study contact", - "contact_first_name": "First name of study contact", - "contact_last_name": "Last name of study contact" - } + "valueSets": [], + "classes": [], + "branches": [], + "multipleChoice": false }, "properties": { - "@context": { - "type": "object", - "properties": { - "contact-email": { - "enum": [ - "https://schema.metadatacenter.org/properties/4021d0f3-5707-4bc7-8c38-896535b8de50" - ] - }, - "contact_middle_initial": { - "enum": [ - "https://schema.metadatacenter.org/properties/e5f0a1a1-8232-43e1-b89d-d178efe5cc71" - ] - }, - "contact_affiliation": { - "enum": [ - "https://schema.metadatacenter.org/properties/5fb25294-15a0-41a6-b701-0efc38220a57" - ] - }, - "contact_first_name": { - "enum": [ - "https://schema.metadatacenter.org/properties/a26e76f0-eaad-42f9-bd6a-d1a4a5d63601" - ] - }, - "contact_last_name": { - "enum": [ - "https://schema.metadatacenter.org/properties/728aa9d9-a802-4b0b-ac7a-558f123aaea6" - ] - } - }, - "additionalProperties": false, - "required": [ - "contact_middle_initial", - "contact_affiliation", - "contact-email", - "contact_first_name", - "contact_last_name" - ] - }, - "@id": { - "type": "string", - "format": "uri" - }, "@type": { "oneOf": [ { @@ -4128,577 +2193,55 @@ } ] }, - "contact-email": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "contact-email field schema", - "description": "contact-email field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "email" - }, - "_valueConstraints": { - "requiredValue": false - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "contact-email", - "schema:description": "Institutional email of study contact", - "pav:createdOn": "2022-03-25T13:53:49-07:00", - "pav:createdBy": "https://metadatacenter.org/users/03b4dbe7-c96b-463d-ad0b-0cec057a6a35", - "pav:lastUpdatedOn": "2022-03-25T13:53:49-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/03b4dbe7-c96b-463d-ad0b-0cec057a6a35", - 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"schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Contact Last Name", - "@id": "https://repo.metadatacenter.org/template-fields/719db6b9-c4ef-4cd0-a9f9-ae1c65fae8ca", - "$schema": "http://json-schema.org/draft-04/schema#" + "rdfs:label": { + "type": [ + "string", + "null" + ] + }, + "@id": { + "type": "string", + "format": "uri" } }, - "required": [ - "@context", - "@id", - "contact_middle_initial", - "contact_affiliation", - "contact-email", - "contact_first_name", - "contact_last_name" - ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:03:40-07:00", + "pav:createdOn": "2022-06-22T15:14:51-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:03:40-07:00", + "pav:lastUpdatedOn": "2022-06-22T15:14:51-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "Contacts", - 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Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", + "skos:prefLabel": "Study treatment or target condition - Detail", + "@id": "https://repo.metadatacenter.org/template-fields/8300f6cd-738b-43e9-aa8d-2f7601f303da", "$schema": "http://json-schema.org/draft-04/schema#" } }, - "Contacts and Registrants": { - "@type": "https://schema.metadatacenter.org/core/TemplateElement", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "Contacts and registrants element schema", - "description": "Contacts and registrants element schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "order": [], - "propertyLabels": {}, - "propertyDescriptions": {} - }, - "properties": { - "@context": { - "type": "object", - "properties": {}, - "additionalProperties": false - }, - "@id": { - "type": "string", - "format": "uri" - }, - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - } - }, - "schema:name": "Contacts and Registrants", - "schema:description": "Describe the contact person(s) for the study. 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"pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/312cccfd-eddb-4749-a86b-f6e6bed7759f", - "schema:identifier": "registrants", "minItems": 1, "items": { "type": "object", - "@id": "https://repo.metadatacenter.org/template-elements/45c30e81-64c9-4a49-b96f-385ad20d7b10", - "@type": "https://schema.metadatacenter.org/core/TemplateElement", + "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", "pav": "http://purl.org/pav/", "bibo": "http://purl.org/ontology/bibo/", "oslc": "http://open-services.net/ns/core#", "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", "schema:name": { "@type": "xsd:string" }, "schema:description": { "@type": "xsd:string" }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, "pav:createdOn": { "@type": "xsd:dateTime" }, @@ -4712,74 +2255,27 @@ "@type": "@id" } }, - "title": "Registrants field schema", - "description": "Registrants field schema generated by the CEDAR Template Editor 2.6.18", + "title": "all_outcome_condition field schema", + "description": "all_outcome_condition field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { - "order": [ - "registrant_first_name", - "registrant_middle_initial", - "registrant_last_name", - "registrant_affiliation", - "registrant_email" + "inputType": "textfield" + }, + "_valueConstraints": { + "requiredValue": false, + "ontologies": [ + { + "numTerms": 348658, + "acronym": "MESH", + "name": "Medical Subject Headings", + "uri": "https://data.bioontology.org/ontologies/MESH" + } ], - "propertyLabels": { - "registrant_email": "registrant_email", - "registrant_middle_initial": "registrant_middle_initial", - "registrant_affiliation": "registrant_affiliation", - "registrant_first_name": "registrant_first_name", - "registrant_last_name": "registrant_last_name" - }, - "propertyDescriptions": { - "registrant_email": "Institutional email of study registrant", - "registrant_middle_initial": "Middle initial of study registrant", - "registrant_affiliation": "Institutional affiliation of study registrant", - "registrant_first_name": "First name of study registrant", - "registrant_last_name": "Last name of study registrant" - } + "valueSets": [], + "classes": [], + "branches": [], + "multipleChoice": false }, "properties": { - "@context": { - "type": "object", - "properties": { - "registrant_email": { - "enum": [ - "https://schema.metadatacenter.org/properties/4021d0f3-5707-4bc7-8c38-896535b8de50" - ] - }, - "registrant_middle_initial": { - "enum": [ - "https://schema.metadatacenter.org/properties/e5f0a1a1-8232-43e1-b89d-d178efe5cc71" - ] - }, - "registrant_affiliation": { - "enum": [ - "https://schema.metadatacenter.org/properties/5fb25294-15a0-41a6-b701-0efc38220a57" - ] - }, - "registrant_first_name": { - "enum": [ - "https://schema.metadatacenter.org/properties/a26e76f0-eaad-42f9-bd6a-d1a4a5d63601" - ] - }, - "registrant_last_name": { - "enum": [ - 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Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", + "skos:prefLabel": "Study outcome condition - Detail", + "@id": "https://repo.metadatacenter.org/template-fields/578e31da-42f1-4e3e-aca3-3bc035de776e", "$schema": "http://json-schema.org/draft-04/schema#" } - } - }, - "schema:name": "Contacts and Registrants", - "schema:description": "", - "required": [ - "@context", - "@id", - "Contacts", - "Contacts and Registrants", - "Registrants" - ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "pav:version": "0.0.1", - "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/50eaf4b5-306b-4cb5-b05d-003f6140a0aa", - "@id": "https://repo.metadatacenter.org/template-elements/08e2cc95-2f40-46ab-9b52-f61ac0e21126", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "Data Availability": { - "@type": "https://schema.metadatacenter.org/core/TemplateElement", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" + "all_other_condition": { + "type": "array", + "minItems": 1, + "items": { + "type": "object", + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, + "title": "all_other_condition field schema", + "description": "all_other_condition field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "textfield" + }, + "_valueConstraints": { + "requiredValue": false, + "ontologies": [ + { + "numTerms": 348658, + "acronym": "MESH", + "name": "Medical Subject Headings", + "uri": "https://data.bioontology.org/ontologies/MESH" + } + ], + "valueSets": [], + "classes": [], + "branches": [], + "multipleChoice": false + }, + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + }, + "@id": { + "type": "string", + "format": "uri" + } + }, + "additionalProperties": false, + "pav:createdOn": "2022-06-22T15:14:51-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-22T15:14:51-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "all_other_condition", + "schema:description": "If the study is measuring or tracking other human health conditions besides the treatment or study target condition and outcome condition, please indicate the other tracked/measured condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", + "skos:prefLabel": "Other measured or tracked conditions - Detail", + "@id": "https://repo.metadatacenter.org/template-fields/708363ac-88aa-4584-88d1-811a55f24c8d", + "$schema": "http://json-schema.org/draft-04/schema#" + } + } + }, + "schema:name": "Human Condition Applicability", + "schema:description": "", + "required": [ + "@context", + "@id", + "condition_category", + "condition_investigation_stage_or_type", + "pain_causal_condition", + "pain_treatment_or_study_target_condition", + "all_treatment_or_study_target_condition", + "all_outcome_condition", + "all_other_condition" + ], + "pav:createdOn": "2024-02-01T06:42:00-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "pav:version": "0.0.2", + "bibo:status": "bibo:draft", + "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/a7dc9f41-e588-4a82-8cca-8987fbc6123a", + "pav:previousVersion": "https://repo.metadatacenter.org/template-elements/a3770036-0d57-4d17-a710-b2f3e13bb4b4", + "@id": "https://repo.metadatacenter.org/template-elements/0f49c355-9ae3-422f-9860-1fda620f3606", + "$schema": "http://json-schema.org/draft-04/schema#" + }, + "Data": { + "@type": "https://schema.metadatacenter.org/core/TemplateElement", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" }, "oslc:modifiedBy": { "@type": "@id" } }, "type": "object", - "title": "Data availability element schema", - "description": "Data availability element schema generated by the CEDAR Template Editor 2.6.19", + "title": "Data element schema", + "description": "Data element schema generated by the CEDAR Template Editor 2.6.18", "_ui": { "order": [ - "produce_data", - "data_available", - "data_restricted", - "data_collection_status", - "data_release_status", - "data_collection_start_date", - "data_collection_finish_date", - "data_release_start_date", - "data_release_finish_date", - "produce_other" + "data_orientation", + "data_source", + "data_type", + "subject_data_unit_of_collection", + "subject_data_unit_of_collection_expected_number", + "subject_data_unit_of_analysis", + "subject_data_unit_of_analysis_expected_number", + "subject_data_level_available", + "subject_geographic_data_level_collected", + "subject_geographic_data_level_available" ], "propertyLabels": { - "data_available": "data_available", - "data_collection_status": "data_collection_status", - "data_release_status": "data_release_status", - "data_collection_start_date": "data_collection_start_date", - "data_collection_finish_date": "data_collection_finish_date", - "data_release_start_date": "data_release_start_date", - "data_release_finish_date": "data_release_finish_date", - "data_restricted": "data_restricted", - "produce_data": "produce_data", - "produce_other": "produce_other" + "subject_data_unit_of_collection": "subject_data_unit_of_collection", + "subject_data_unit_of_analysis": "subject_data_unit_of_analysis", + "subject_data_level_available": "subject_data_level_available", + "subject_data_unit_of_collection_expected_number": "subject_data_unit_of_collection_expected_number", + "subject_data_unit_of_analysis_expected_number": "subject_data_unit_of_analysis_expected_number", + "subject_geographic_data_level_collected": "subject_geographic_data_level_collected", + "subject_geographic_data_level_available": "subject_geographic_data_level_available", + "data_orientation": "data_orientation", + "data_type": "data_type", + "data_source": "data_source" }, "propertyDescriptions": { - "data_available": "If study will collect/produce data, indicate whether all, some, or none of the data will be made available", - "data_collection_status": "If study will collect/produce data, indicate whether the study has not started, has started, or has finished data collection/production activities", - "data_release_status": "If the study will collect/produce data and make at least some of the data available, indicate whether the study has not started, has started, or has finished data release activities.", - "data_collection_start_date": "If the study will collect/produce data, indicate the anticipated date when data collection/production will begin", - "data_collection_finish_date": "If the study will collect/produce data, indicate the anticipated date when data collection/production will end (data collection/production is complete).", - "data_release_start_date": "If study will collect/produce data and make at least some of the data available, indicate the anticipated date when first data will be released.", - "data_release_finish_date": "If study will produce data and make at least some of the data available, indicate the anticipated date when last data will be released (data release is complete).", - "data_restricted": "If study will collect/produce data, and make at least some of that data available, indicate whether all, some, or none of the data will have restriction(s) on access beyond acknowledgement and signing of a minimal DSA", - "produce_data": "Indicate whether or not the study will collect/produce (primary or secondary) data.", - "produce_other": "Indicate whether or not the study will produce shareable products other than data." + "subject_data_unit_of_collection": "For studies with human subjects, is the data collected at the individual or population level?", + "subject_data_unit_of_analysis": "For studies with human subjects, is the data analyzed at the individual or population level?", + "subject_data_level_available": "For studies with human subjects that will make at least some data available, will data be made available at the individual subject level or some level of aggregation?", + "subject_data_unit_of_collection_expected_number": "For studies with human subjects, what is the expected number of subjects for which data will be collected? If unit of data collection is individuals this is the expected number of individuals, and if the unit of data collection is populations/clusters this is the expected number of populations/clusters.", + "subject_data_unit_of_analysis_expected_number": "For studies with human subjects, what is the expected number of subjects at the level at which data will be analyzed? If unit of data analysis is individuals this is the expected number of individuals, and if the unit of data analysis is populations/clusters this is the expected number of populations/clusters.", + "subject_geographic_data_level_collected": "For studies with human subjects, will geographic data be collected? if so, what level of geographic detail will be collected?", + "subject_geographic_data_level_available": "For studies with human subjects that collect geographic data and will make at least some data available, will geographic data be made available? if so, what level of geographic detail will be made available?", + "data_orientation": "Does the study produce/collect quantitative data?, qualitative data? Choose as many as apply.", + "data_type": "What is the type of the data the study will produce/collect. Choose as many as apply.", + "data_source": "What is the source of the data the study will produce/collect. Choose as many as apply." } }, "properties": { "@context": { "type": "object", "properties": { - "data_available": { + "subject_data_unit_of_collection": { "enum": [ - "https://schema.metadatacenter.org/properties/540cf2c4-012e-40be-a191-4498474918f8" + "https://schema.metadatacenter.org/properties/c45b0841-4c50-4d5b-be49-eed993313621" ] }, - "data_collection_status": { + "subject_data_unit_of_analysis": { "enum": [ - "https://schema.metadatacenter.org/properties/74cd5963-7261-439c-83e2-a6329b16d285" + "https://schema.metadatacenter.org/properties/deb7a1ed-f021-4049-a652-8d93eac22919" ] }, - "data_release_status": { + "subject_data_level_available": { "enum": [ - "https://schema.metadatacenter.org/properties/4018cbfd-e055-4e69-8c23-9b2b47dd0191" + "https://schema.metadatacenter.org/properties/a2a4dfeb-2ff5-4b2d-b0b1-c7a5b4115c90" ] }, - "data_collection_start_date": { + "subject_data_unit_of_collection_expected_number": { "enum": [ - "https://schema.metadatacenter.org/properties/1da1c9af-ae90-4efe-8ab2-85797d9e0e82" + "https://schema.metadatacenter.org/properties/ebdf8513-cf96-4c41-ae89-a69e5dcb1dbf" ] }, - "data_collection_finish_date": { + "subject_data_unit_of_analysis_expected_number": { "enum": [ - "https://schema.metadatacenter.org/properties/1a39e732-9682-4963-9f80-de08ed504173" + "https://schema.metadatacenter.org/properties/cd41aebd-4134-4feb-9544-9ce1ba2f1f23" ] }, - "data_release_start_date": { + "subject_geographic_data_level_collected": { "enum": [ - "https://schema.metadatacenter.org/properties/82bba606-0597-4080-983d-a4fc3341b211" + "https://schema.metadatacenter.org/properties/d9ed6775-3a89-4798-8022-866ac6c7508d" ] }, - "data_release_finish_date": { + "subject_geographic_data_level_available": { "enum": [ - "https://schema.metadatacenter.org/properties/236c55ff-14c7-4123-adf2-5019eb5c8344" + "https://schema.metadatacenter.org/properties/77092eaa-e48c-4418-a367-d6716b5a1f0b" ] }, - "data_restricted": { + "data_orientation": { "enum": [ - "https://schema.metadatacenter.org/properties/6d5d1e5e-1f88-430f-b815-e8414a384f35" + "https://schema.metadatacenter.org/properties/0de3ec6b-f3e9-4aa9-a367-b2205eefb92d" ] }, - "produce_data": { + "data_type": { "enum": [ - "https://schema.metadatacenter.org/properties/a05f2427-6240-4c0c-a29e-4a7a6b43276c" + "https://schema.metadatacenter.org/properties/7a3d7b6c-fb4f-44a3-ac86-852b692b6458" ] }, - "produce_other": { + "data_source": { "enum": [ - "https://schema.metadatacenter.org/properties/e46f791a-85ec-4aed-a7cc-24a34664b79b" + "https://schema.metadatacenter.org/properties/4182e91d-60fc-49c8-b9bd-3721affbeced" ] } }, "additionalProperties": false, "required": [ - "data_available", - "data_collection_status", - "data_release_status", - "data_collection_start_date", - "data_collection_finish_date", - "data_release_start_date", - "data_release_finish_date", - "data_restricted", - "produce_data", - "produce_other" - ] - }, + "subject_data_unit_of_collection", + "subject_data_unit_of_analysis", + "subject_data_level_available", + "subject_data_unit_of_collection_expected_number", + "subject_data_unit_of_analysis_expected_number", + "subject_geographic_data_level_collected", + "subject_geographic_data_level_available", + "data_orientation", + "data_type", + "data_source" + ] + }, "@id": { "type": "string", "format": "uri" @@ -5445,108 +2602,337 @@ } ] }, - "data_available": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" + "subject_data_unit_of_collection": { + "type": "array", + "minItems": 1, + "items": { + "type": "object", + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } }, - "pav:createdOn": { - "@type": "xsd:dateTime" + "title": "subject_data_unit_of_collection field schema", + "description": "subject_data_unit_of_collection field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" }, - "pav:createdBy": { - "@type": "@id" + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": true, + "literals": [ + { + "label": "Individual" + }, + { + "label": "Community, Group, Cluster, Population" + } + ] }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "data_available field schema", - "description": "data_available field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": false, - "literals": [ - { - "label": "none" + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "subject_data_unit_of_collection", + "schema:description": "For studies with human subjects, is the data collected at the individual or population level?", + "skos:prefLabel": "Human Subject Data - Unit of Collection", + "@id": "https://repo.metadatacenter.org/template-fields/575ca7f9-f105-4ee2-8371-924a47e4627b", + "$schema": "http://json-schema.org/draft-04/schema#" + } + }, + "subject_data_unit_of_analysis": { + "type": "array", + "minItems": 1, + "items": { + "type": "object", + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" }, - { - "label": "some" + "schema:description": { + "@type": "xsd:string" }, - { - "label": "all" + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" } - ] - }, - "properties": { - "@type": { - "oneOf": [ + }, + "title": "subject_data_unit_of_analysis field schema", + "description": "subject_data_unit_of_analysis field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" + }, + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": true, + "literals": [ { - "type": "string", - "format": "uri" + "label": "Individual" }, { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true + "label": "Community, Group, Cluster, Population" } ] }, - "@value": { - "type": [ - "string", - "null" - ] + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "data_available", - "schema:description": "If study will collect/produce data, indicate whether all, some, or none of the data will be made available", - "pav:createdOn": "2022-06-02T15:04:33-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "@id": "https://repo.metadatacenter.org/template-fields/61419009-5ff4-4a50-b7f1-01aaea8da133", - "skos:prefLabel": "Will the study make data available?", - "$schema": "http://json-schema.org/draft-04/schema#" + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "subject_data_unit_of_analysis", + "schema:description": "For studies with human subjects, is the data analyzed at the individual or population level?", + "skos:prefLabel": "Human Subject Data - Unit of Analysis", + "@id": "https://repo.metadatacenter.org/template-fields/1a2a5819-edb2-4b4a-aaa8-ef62babde26e", + "$schema": "http://json-schema.org/draft-04/schema#" + } }, - "data_collection_status": { + "subject_data_level_available": { + "type": "array", + "minItems": 1, + "items": { + "type": "object", + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, + "title": "subject_data_level_available field schema", + "description": "subject_data_level_available field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" + }, + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": true, + "literals": [ + { + "label": "Individual - Unaggregated" + }, + { + "label": "Individual - Aggregated" + }, + { + "label": "Community, Group, Cluster, Population - Unaggregated" + }, + { + "label": "Community, Group, Cluster, Population - Aggregated" + }, + { + "label": "Unaggregated" + }, + { + "label": "Aggregated" + }, + { + "label": "Aggregated, across all (population summary statistics)" + }, + { + "label": "Aggregated, by treatment/exposure group" + }, + { + "label": "Aggregated, by demographic variable(s)" + }, + { + "label": "Aggregated, by geographic variable(s)" + } + ] + }, + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } + }, + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "subject_data_level_available", + "schema:description": "For studies with human subjects that will make at least some data available, will data be made available at the individual subject level or some level of aggregation?", + "skos:prefLabel": "Human Subject Data - Individual or Aggregated Data made available?", + "@id": "https://repo.metadatacenter.org/template-fields/22cd3f38-fc2f-4f5a-aa8b-d6ba6b24291f", + "$schema": "http://json-schema.org/draft-04/schema#" + } + }, + "subject_data_unit_of_collection_expected_number": { "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -5581,44 +2967,16 @@ } }, "type": "object", - "title": "data_collection_status field schema", - "description": "data_collection_status field schema generated by the CEDAR Template Editor 2.6.18", + "title": "subject_data_unit_of_collection_expected_number field schema", + "description": "subject_data_unit_of_collection_expected_number field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { - "inputType": "list" + "inputType": "numeric" }, "_valueConstraints": { "requiredValue": false, - "multipleChoice": false, - "literals": [ - { - "label": "not started" - }, - { - "label": "started" - }, - { - "label": "finished" - } - ] + "numberType": "xsd:int" }, "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, "@value": { "type": [ "string", @@ -5630,24 +2988,29 @@ "string", "null" ] + }, + "@type": { + "type": "string", + "format": "uri" } }, "required": [ - "@value" + "@value", + "@type" ], - "schema:name": "data_collection_status", - "schema:description": "If study will collect/produce data, indicate whether the study has not started, has started, or has finished data collection/production activities", - "pav:createdOn": "2022-06-02T15:04:33-07:00", + "schema:name": "subject_data_unit_of_collection_expected_number", + "schema:description": "For studies with human subjects, what is the expected number of subjects for which data will be collected? If unit of data collection is individuals this is the expected number of individuals, and if the unit of data collection is populations/clusters this is the expected number of populations/clusters.", + "pav:createdOn": "2022-06-02T15:11:25-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", + "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "skos:prefLabel": "Has data collection/production started?", - "@id": "https://repo.metadatacenter.org/template-fields/68cd9194-f6b1-4aa9-89d4-b59add064a5d", + "skos:prefLabel": "Human Subject Data - Expected Number of the Unit of Collection", + "@id": "https://repo.metadatacenter.org/template-fields/e6bc8396-d2fe-4140-b23c-a294e48ef100", "$schema": "http://json-schema.org/draft-04/schema#" }, - "data_release_status": { + "subject_data_unit_of_analysis_expected_number": { "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -5682,44 +3045,16 @@ } }, "type": "object", - "title": "data_release_status field schema", - "description": "data_release_status field schema generated by the CEDAR Template Editor 2.6.18", + "title": "subject_data_unit_of_analysis_expected_number field schema", + "description": "subject_data_unit_of_analysis_expected_number field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { - "inputType": "list" + "inputType": "numeric" }, "_valueConstraints": { "requiredValue": false, - "multipleChoice": false, - "literals": [ - { - "label": "not started" - }, - { - "label": "started" - }, - { - "label": "finished" - } - ] + "numberType": "xsd:int" }, "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, "@value": { "type": [ "string", @@ -5731,714 +3066,658 @@ "string", "null" ] + }, + "@type": { + "type": "string", + "format": "uri" } }, "required": [ - "@value" + "@value", + "@type" ], - "schema:name": "data_release_status", - "schema:description": "If the study will collect/produce data and make at least some of the data available, indicate whether the study has not started, has started, or has finished data release activities.", - "pav:createdOn": "2022-06-02T15:04:33-07:00", + "schema:name": "subject_data_unit_of_analysis_expected_number", + "schema:description": "For studies with human subjects, what is the expected number of subjects at the level at which data will be analyzed? If unit of data analysis is individuals this is the expected number of individuals, and if the unit of data analysis is populations/clusters this is the expected number of populations/clusters.", + "pav:createdOn": "2022-06-02T15:11:25-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", + "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "skos:prefLabel": "Has data release started?", - "@id": "https://repo.metadatacenter.org/template-fields/d8213256-2292-4aa9-8218-2eeace923877", + "skos:prefLabel": "Human Subject Data - Expected Number of the Unit of Analysis", + "@id": "https://repo.metadatacenter.org/template-fields/e8e7080a-97c4-4d16-b28b-049e090d9a96", "$schema": "http://json-schema.org/draft-04/schema#" }, - "data_collection_start_date": { - 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] - }, - "properties": { - "@type": { - "oneOf": [ + }, + "title": "data_type field schema", + "description": "data_type field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" + }, + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": true, + "literals": [ { - "type": "string", - "format": "uri" + "label": "Genomic" }, { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "produce_data", - "schema:description": "Indicate whether or not the study will collect/produce (primary or secondary) data.", - "pav:createdOn": "2022-06-02T15:04:33-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Will the study collect or produce data?", - "@id": "https://repo.metadatacenter.org/template-fields/ebc647a8-d501-4889-98ef-b903c904b976", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "produce_other": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "produce_other field schema", - "description": "produce_other field schema generated by the CEDAR Template Editor 2.6.19", - "_ui": { - "inputType": "radio" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": false, - "literals": [ - { - "label": "Yes" - }, - { - "label": "No" - } - ] - }, - "properties": { - "@type": { - "oneOf": [ + "label": "Proteomic" + }, { - "type": "string", - "format": "uri" + "label": "Biochemical" }, { - "type": "array", - "minItems": 1, - "items": { + "label": "Biophysical" + }, + { + "label": "Imaging" + }, + { + "label": "Interview/Focus Group" + }, + { + "label": "Interview/Focus Group - structured" + }, + { + "label": "Interview/Focus Group - semi-structured" + }, + { + "label": "Interview/Focus Group - unstructured" + }, + { + "label": "Questionnaire/Survey/Assessment" + }, + { + "label": "Questionnaire/Survey/Assessment - validated instrument" + }, + { + "label": "Questionnaire/Survey/Assessment - unvalidated instrument" + } + ] + }, + "properties": { + "@type": { + "oneOf": [ + { "type": "string", "format": "uri" }, - "uniqueItems": true - } - ] + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } }, - "@value": { - "type": [ - "string", - "null" - ] + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "data_type", + "schema:description": "What is the type of the data the study will produce/collect. Choose as many as apply.", + "skos:prefLabel": "Data Type", + "@id": "https://repo.metadatacenter.org/template-fields/3b1d1bb3-ded2-4985-9917-464344e34299", + "$schema": "http://json-schema.org/draft-04/schema#" + } + }, + "data_source": { + "type": "array", + "minItems": 1, + "items": { + "type": "object", + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } }, - "rdfs:label": { - "type": [ - "string", - "null" + "title": "data_source field schema", + "description": "data_source field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" + }, + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": true, + "literals": [ + { + "label": "Administrative" + }, + { + "label": "Government Collected/Measured" + }, + { + "label": "Clinical/EHR" + }, + { + "label": "Laboratory" + }, + { + "label": "Researcher Collected/Measured" + }, + { + "label": "Patient-Reported" + } ] - } - }, - "required": [ - "@value" - ], - "schema:name": "produce_other", - "schema:description": "Indicate whether or not the study will produce shareable products other than data.", - "pav:createdOn": "2022-06-02T15:04:33-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:04:33-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Will study produce shareable products other than data?", - "@id": "https://repo.metadatacenter.org/template-fields/089c4eb6-887f-4496-8a8c-07228a6f12f0", - "$schema": "http://json-schema.org/draft-04/schema#" + }, + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } + }, + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "data_source", + "schema:description": "What is the source of the data the study will produce/collect. Choose as many as apply.", + "skos:prefLabel": "Source of Data", + "@id": "https://repo.metadatacenter.org/template-fields/472a3b9e-4763-4a24-b0ec-af465345d820", + "$schema": "http://json-schema.org/draft-04/schema#" + } } }, - "schema:name": "Data Availability", + "schema:name": "Data", "schema:description": "", "required": [ "@context", "@id", - "data_available", - "data_collection_status", - "data_release_status", - "data_collection_start_date", - "data_collection_finish_date", - "data_release_start_date", - "data_release_finish_date", - "data_restricted", - "produce_data", - "produce_other" + "subject_data_unit_of_collection", + "subject_data_unit_of_analysis", + "subject_data_level_available", + "subject_data_unit_of_collection_expected_number", + "subject_data_unit_of_analysis_expected_number", + "subject_geographic_data_level_collected", + "subject_geographic_data_level_available", + "data_orientation", + "data_type", + "data_source" ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", + "pav:createdOn": "2024-02-01T06:42:00-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, "pav:version": "0.0.1", "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/98806ebf-6a4c-4bd5-8624-cd9d190cdfe4", - "@id": "https://repo.metadatacenter.org/template-elements/d133b6e9-2842-489f-b803-9ef121d1bbd0", + "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/86aeaad2-a59a-44a6-ad52-49ed509da1fb", + "@id": "https://repo.metadatacenter.org/template-elements/62b35d48-26ad-4401-9e96-92e421ce9686", "$schema": "http://json-schema.org/draft-04/schema#" }, - "Findings": { + "Metadata Location": { "@type": "https://schema.metadatacenter.org/core/TemplateElement", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -6466,50 +3745,43 @@ } }, "type": "object", - "title": "Findings element schema", - "description": "Findings element schema generated by the CEDAR Template Editor 2.6.18", + "title": "Metadata location element schema", + "description": "Metadata location element schema generated by the CEDAR Template Editor 2.6.19", "_ui": { "order": [ - "primary_publications", - "primary_study_findings", - "secondary_publications" + "nih_application_id", + "other_study_websites" ], "propertyLabels": { - "primary_publications": "primary_publications", - "secondary_publications": "secondary_publications", - "primary_study_findings": "primary_study_findings" + "other_study_websites": "other_study_websites", + "nih_application_id": "nih_application_id" }, "propertyDescriptions": { - "primary_publications": "List of the doi for any/all primary study publications that use the study data; include any papers, books, articles, blog posts, etc. authored by the investigators or team responsible for the study; one item in this array per publication/doi.", - "secondary_publications": "List of the doi for any/all secondary study publications that use the study data; include any papers, books, articles, blog posts, etc. authored by persons OTHER THAN the investigators or team responsible for the study; one item in this array per publication/doi.", - "primary_study_findings": "Simple, one-sentence take-away conclusion(s) from study author publications; one item in this array per single-sentence conclusion (e.g. item #1: Provision of MAT rx to men with documented OUD leaving jail reduces overdose risk by 9%; item #2: Provision of MAT rx plus case management support to men with documented OUD leaving jail reduces overdose risk by 30%; item 3: Provision of MAT rx plus case management support to men with documented OUD leaving jail is more effective than provision of MAT rx alone at reducing risk of OUD overdose)." + "other_study_websites": "Other websites officially associated with this study that provide additional information about the study.", + "Data Repositories": "", + "Metadata Location - Details": "", + "nih_application_id": "DO NOT EDIT - NIH application ID; This text will be auto-populated if applicable (i.e. study is funded by NIH)" } }, "properties": { "@context": { "type": "object", "properties": { - "primary_publications": { - "enum": [ - "https://schema.metadatacenter.org/properties/e5f0a1a1-8232-43e1-b89d-d178efe5cc71" - ] - }, - "secondary_publications": { + "other_study_websites": { "enum": [ - "https://schema.metadatacenter.org/properties/26a3e131-82b6-40df-b534-30f27dc9fb9f" + "https://schema.metadatacenter.org/properties/b823702e-2e9e-4b3a-ad0d-c375bc65846e" ] }, - "primary_study_findings": { + "nih_application_id": { "enum": [ - "https://schema.metadatacenter.org/properties/2567c7bb-574d-448c-b865-c15569d03911" + "https://schema.metadatacenter.org/properties/09eb1753-f557-4d30-8ba5-d1aa5b0389f9" ] } }, "additionalProperties": false, "required": [ - "primary_publications", - "primary_study_findings", - "secondary_publications" + "other_study_websites", + "nih_application_id" ] }, "@id": { @@ -6533,12 +3805,11 @@ } ] }, - "primary_publications": { + "other_study_websites": { "type": "array", - "minItems": 0, + "minItems": 1, "items": { "type": "object", - "@id": "https://repo.metadatacenter.org/template-fields/c56d077f-508f-433f-a3ae-deca560dfeb7", "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -6572,10 +3843,10 @@ "@type": "@id" } }, - "title": "primary_publications field schema", - "description": "primary_publications field schema generated by the CEDAR Template Editor 2.6.18", + "title": "other_study_websites field schema", + "description": "other_study_websites field schema generated by the CEDAR Template Editor 2.6.19", "_ui": { - "inputType": "textfield" + "inputType": "link" }, "_valueConstraints": { "requiredValue": false @@ -6598,243 +3869,142 @@ } ] }, - "@value": { - "type": [ - "string", - "null" - ] - }, "rdfs:label": { "type": [ "string", "null" ] + }, + "@id": { + "type": "string", + "format": "uri" } }, - "required": [ - "@value" - ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:05:29-07:00", + "pav:createdOn": "2022-06-27T11:27:32-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:05:29-07:00", + "pav:lastUpdatedOn": "2022-06-27T11:27:32-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "primary_publications", - "schema:description": "List of the doi for any/all primary study publications that use the study data; include any papers, books, articles, blog posts, etc. authored by the investigators or team responsible for the study; one item in this array per publication/doi.", - "skos:prefLabel": "Primary Publications DOI", + "schema:name": "other_study_websites", + "schema:description": "Other websites officially associated with this study that provide additional information about the study.", + "skos:prefLabel": "Other Study-Associated Websites", + "@id": "https://repo.metadatacenter.org/template-fields/f65e7112-2b10-4a5a-b4a9-6932e3f16a38", "$schema": "http://json-schema.org/draft-04/schema#" } }, - "secondary_publications": { - "type": "array", - "minItems": 0, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "title": "secondary_publications field schema", - "description": "secondary_publications field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "textfield" - }, - "_valueConstraints": { - "requiredValue": false - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } + "nih_application_id": { + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:05:29-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:05:29-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "secondary_publications", - "schema:description": "List of the doi for any/all secondary study publications that use the study data; include any papers, books, articles, blog posts, etc. authored by persons OTHER THAN the investigators or team responsible for the study; one item in this array per publication/doi.", - "skos:prefLabel": "Secondary Publications DOI", - "@id": "https://repo.metadatacenter.org/template-fields/97bbe05b-8a31-418d-8c4f-60cf528550d5", - "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "primary_study_findings": { - "type": "array", - "minItems": 0, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } + "schema:description": { + "@type": "xsd:string" }, - "title": "primary_study_findings field schema", - "description": "primary_study_findings field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "textfield" + "skos:prefLabel": { + "@type": "xsd:string" }, - "_valueConstraints": { - "requiredValue": false + "skos:altLabel": { + "@type": "xsd:string" }, - "properties": { - "@type": { - "oneOf": [ - { + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, + "type": "object", + "title": "nih_application_id field schema", + "description": "nih_application_id field schema generated by the CEDAR Template Editor 2.6.19", + "_ui": { + "inputType": "textfield" + }, + "_valueConstraints": { + "requiredValue": false + }, + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { "type": "string", "format": "uri" }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } + "uniqueItems": true + } + ] }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:05:29-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:05:29-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "primary_study_findings", - "schema:description": "Simple, one-sentence take-away conclusion(s) from study author publications; one item in this array per single-sentence conclusion (e.g. item #1: Provision of MAT rx to men with documented OUD leaving jail reduces overdose risk by 9%; item #2: Provision of MAT rx plus case management support to men with documented OUD leaving jail reduces overdose risk by 30%; item 3: Provision of MAT rx plus case management support to men with documented OUD leaving jail is more effective than provision of MAT rx alone at reducing risk of OUD overdose).", - "skos:prefLabel": "Primary Study Findings", - "@id": "https://repo.metadatacenter.org/template-fields/06b7f754-009c-4875-a019-c3f6bc23d954", - "$schema": "http://json-schema.org/draft-04/schema#" - } + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } + }, + "required": [ + "@value" + ], + "schema:name": "nih_application_id", + "schema:description": "DO NOT EDIT - NIH application ID; This text will be auto-populated if applicable (i.e. study is funded by NIH)", + "pav:createdOn": "2022-06-27T11:27:32-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-27T11:27:32-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "skos:prefLabel": "NIH Application ID", + "@id": "https://repo.metadatacenter.org/template-fields/c1b68775-77d6-463c-ba7e-251ec7608bc0", + "$schema": "http://json-schema.org/draft-04/schema#" } }, - "schema:name": "Findings", + "schema:name": "Metadata Location", "schema:description": "", "required": [ "@context", "@id", - "primary_publications", - "primary_study_findings", - "secondary_publications" + "other_study_websites", + "nih_application_id" ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", + "pav:createdOn": "2024-02-01T06:42:00-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "pav:version": "0.0.1", - "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/747feae2-03b7-43f0-acea-09d25adea8db", - "@id": "https://repo.metadatacenter.org/template-elements/0cf7c2e3-a359-45af-924e-5154f5861c48", + "pav:version": "0.0.2", + "bibo:status": "bibo:draft", + "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/bd5bf7bf-a0f5-4d5a-8b96-bedd7019ba56", + "pav:previousVersion": "https://repo.metadatacenter.org/template-elements/e4107de6-4bfe-42c5-af17-360bc0bcdd1f", + "@id": "https://repo.metadatacenter.org/template-elements/eefa09ad-8e75-4b2e-ba79-3a2c1d1338b9", "$schema": "http://json-schema.org/draft-04/schema#" }, - "Study Translation Focus": { + "Human Treatment Applicability": { "@type": "https://schema.metadatacenter.org/core/TemplateElement", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -6862,41 +4032,68 @@ } }, "type": "object", - "title": "Study translation focus element schema", - "description": "Study translation focus element schema generated by the CEDAR Template Editor 2.6.18", + "title": "Human treatment applicability element schema", + "description": "Human treatment applicability element schema generated by the CEDAR Template Editor 2.6.19", "_ui": { "order": [ - "study_translation_focus", - "study_translational_topic_grouping" + "treatment_investigation_stage_or_type", + "treatment_mode", + "treatment_novelty", + "treatment_application_level", + "treatment_type" ], "propertyLabels": { - "study_translation_focus": "study_translation_focus", - "study_translational_topic_grouping": "study_translational_topic_grouping" + "treatment_investigation_stage_or_type": "treatment_investigation_stage_or_type", + "treatment_mode": "treatment_mode", + "treatment_application_level": "treatment_application_level", + "treatment_type": "treatment_type", + "treatment_novelty": "treatment_novelty" }, "propertyDescriptions": { - "study_translation_focus": "Whether the study is primarily focused on learning more about a human opioid or pain CONDITION or on discovering, or learning more about a TREATMENT, intervention, or solution for a human opioid or pain condition. This may be quite simple to infer for human subject studies. For studies not involving human subjects, please consider how/where the study will most substantially contribute to the HEAL Initiative translational purpose of learning more about human opioid and pain conditions and driving development of solutions to these conditions. Choose one.", - "study_translational_topic_grouping": "What types of determinants and/or mechanisms related to human opioid use or pain conditions is the study investigating and/or measuring (e.g. A study investigating differential pain/nociception signaling in persons living in neighborhoods with high versus low social cohesion might choose both 'Biology and Health' and 'Social Determinants'). Choose as many as apply." + "treatment_investigation_stage_or_type": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION' - If the study is investigating a treatment, intervention, or solution to a human opioid or pain condition, what type of investigation is the study undertaking?", + "treatment_mode": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION' - Is the treatment, intervention, or solution that my study is relevant to meant to prevent the occurrance of a condition (e.g. development of a non-opioid drug for pain to prevent opioid exposure and addiction, case management and MAT for pregnant women to prevent in utero exposure to opioids, safe needle exchange center to prevent spread of blood borne diseases among people using heroin), treat an occurrance of a condition (e.g. naloxone to treat opioid overdose, physical therapy to treat existing pain from a back injury) , and/or is it a harm reduction mechanism (e.g. safe needle exchange reduces harm associated with heroin addiction/use, decriminalization of heroin possession or use reduces the harm associated with heroin addiction/use)", + "treatment_application_level": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION' - Is the treatment, intervention, or solution that my study is relevant to applied at the individual level (e.g. a doctor prescribes a drug or physical therapy regimen to a patient) or at the population/community/group level (e.g. a city changes good samaritan naloxone laws, or implements a safe needle exchange center, or adds park maintenance resources to the budget to provide more access to outside places to exercise)?", + "treatment_type": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION' - Classify the treatment, intervention, or solution the study is relevant to by broad type of intervention. Choose as many as apply", + "treatment_novelty": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION' - Is the treatment, intervention, or solution that my study is relevant to totally novel, is it totally established, does it have some element of novelty added to an established intervention (novel added to established, established used in a novel population, setting, or combination)?" } }, "properties": { "@context": { "type": "object", "properties": { - "study_translation_focus": { + "treatment_investigation_stage_or_type": { "enum": [ - "https://schema.metadatacenter.org/properties/55184a53-bd1d-449f-a0f8-9df12476224a" + "https://schema.metadatacenter.org/properties/b6108e07-a471-449d-9a13-2c9a24384424" ] }, - "study_translational_topic_grouping": { + "treatment_mode": { "enum": [ - "https://schema.metadatacenter.org/properties/3642f6be-ec33-414d-ace1-fe5c7c5e10e6" + "https://schema.metadatacenter.org/properties/648f1627-d787-4abe-9fff-5d6628b143b7" + ] + }, + "treatment_application_level": { + "enum": [ + "https://schema.metadatacenter.org/properties/ba361d44-0ce2-475a-b1ae-e52f78a6606b" + ] + }, + "treatment_type": { + "enum": [ + "https://schema.metadatacenter.org/properties/6aa00a53-272b-40b1-8749-422fafc4661b" + ] + }, + "treatment_novelty": { + "enum": [ + "https://schema.metadatacenter.org/properties/d1342545-4fcb-48b0-a3c1-06e7a487d3c6" ] } }, "additionalProperties": false, "required": [ - 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} - }, - "type": "object", - "title": "study_translation_focus field schema", - "description": "study_translation_focus field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": false, - "literals": [ - { - "label": "Condition" + "treatment_investigation_stage_or_type": { + "type": "array", + "minItems": 1, + "items": { + "type": "object", + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" }, - { - "label": "Treatment" + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" } - ] - }, - "properties": { - "@type": { - "oneOf": [ + }, + "title": "treatment_investigation_stage_or_type field schema", + "description": "treatment_investigation_stage_or_type field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" + }, + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": true, + "literals": [ { - "type": "string", - "format": "uri" + "label": "target discovery" }, { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true + "label": "target mechanism" + }, + { + "label": "treatment discovery" + }, + { + "label": "treatment mechanism" + }, + { + "label": "treatment efficacy" + }, + { + "label": "differential treatment efficacy" + }, + { + "label": "treatment implementation" + }, + { + "label": "treatment availability or accessibility" } ] }, - "@value": { - "type": [ - "string", - "null" - ] + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "study_translation_focus", - "schema:description": "Whether the study is primarily focused on learning more about a human opioid or pain CONDITION or on discovering, or learning more about a TREATMENT, intervention, or solution for a human opioid or pain condition. This may be quite simple to infer for human subject studies. For studies not involving human subjects, please consider how/where the study will most substantially contribute to the HEAL Initiative translational purpose of learning more about human opioid and pain conditions and driving development of solutions to these conditions. Choose one.", - "pav:createdOn": "2022-06-02T15:06:25-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:06:25-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Study Translational Focus", - "@id": "https://repo.metadatacenter.org/template-fields/624f2e6f-4632-4ecb-b680-c1a8a23ad50a", - "$schema": "http://json-schema.org/draft-04/schema#" + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2022-06-27T11:50:55-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-27T11:50:55-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "treatment_investigation_stage_or_type", + "schema:description": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION' - If the study is investigating a treatment, intervention, or solution to a human opioid or pain condition, what type of investigation is the study undertaking?", + "skos:prefLabel": "Treatment Investigation Stage or Type", + "@id": "https://repo.metadatacenter.org/template-fields/f56ae296-fdff-438f-aa94-e7cff7250a25", + "$schema": "http://json-schema.org/draft-04/schema#" + } }, - "study_translational_topic_grouping": { + "treatment_mode": { "type": "array", "minItems": 1, "items": { @@ -7056,8 +4275,8 @@ "@type": "@id" } }, - "title": "study_translational_topic_grouping field schema", - "description": "study_translational_topic_grouping field schema generated by the CEDAR Template Editor 2.6.18", + "title": "treatment_mode field schema", + "description": "treatment_mode field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { "inputType": "list" }, @@ -7066,16 +4285,13 @@ "multipleChoice": true, "literals": [ { - "label": "Biology and Health" - }, - { - "label": "Mental Health" + "label": "Preventive (prevention of an occurrence)" }, { - "label": "Social Determinants" + "label": "Therapeutic (treating an occurrence)" }, { - "label": "Public Attitudes or Stigma" + "label": "Harm Reduction (preventing more of an occurrence, or preventing harm from an occurrence)" } ] }, @@ -7114,470 +4330,125 @@ "@value" ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:06:25-07:00", + "pav:createdOn": "2022-06-27T11:50:55-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:06:25-07:00", + "pav:lastUpdatedOn": "2022-06-27T11:50:55-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "study_translational_topic_grouping", - "schema:description": "What types of determinants and/or mechanisms related to human opioid use or pain conditions is the study investigating and/or measuring (e.g. A study investigating differential pain/nociception signaling in persons living in neighborhoods with high versus low social cohesion might choose both 'Biology and Health' and 'Social Determinants'). Choose as many as apply.", - "skos:prefLabel": "Types of determinants/mechanisms the study is investigating", - "@id": "https://repo.metadatacenter.org/template-fields/12acc429-e084-49d5-9ce1-3d88245a07df", + "schema:name": "treatment_mode", + "schema:description": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION' - Is the treatment, intervention, or solution that my study is relevant to meant to prevent the occurrance of a condition (e.g. development of a non-opioid drug for pain to prevent opioid exposure and addiction, case management and MAT for pregnant women to prevent in utero exposure to opioids, safe needle exchange center to prevent spread of blood borne diseases among people using heroin), treat an occurrance of a condition (e.g. naloxone to treat opioid overdose, physical therapy to treat existing pain from a back injury) , and/or is it a harm reduction mechanism (e.g. safe needle exchange reduces harm associated with heroin addiction/use, decriminalization of heroin possession or use reduces the harm associated with heroin addiction/use)", + "skos:prefLabel": "Treatment Mode", + "@id": "https://repo.metadatacenter.org/template-fields/38c5014c-b0fc-4a4f-b5ae-32c5198f56dc", "$schema": "http://json-schema.org/draft-04/schema#" } - } - }, - "schema:name": "Study Translation Focus", - "schema:description": "", - "required": [ - "@context", - "@id", - "study_translation_focus", - "study_translational_topic_grouping" - ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "pav:version": "0.0.1", - "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/95b3318d-2abb-4424-81af-27dfc3343555", - "@id": "https://repo.metadatacenter.org/template-elements/1445e46b-2c54-4706-9425-eaf855cb4595", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "Study Type": { - "@type": "https://schema.metadatacenter.org/core/TemplateElement", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "Study type element schema", - "description": "Study type element schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "order": [ - "study_stage", - "study_primary_or_secondary", - "study_observational_or_experimental", - "study_subject_type", - "study_type_design" - ], - "propertyLabels": { - "study_stage": "study_stage", - "study_primary_or_secondary": "study_primary_or_secondary", - "study_observational_or_experimental": "study_observational_or_experimental", - "study_subject_type": "study_subject_type", - "study_type_design": "study_type_design" }, - "propertyDescriptions": { - "study_stage": "The category of research being conducted", - "study_primary_or_secondary": "Is the study collecting data itself to analyze and draw conclusions or is it leveraging data collected by other entities to analyze and draw conclusions.", - "study_observational_or_experimental": "Whether the study is observational (no explicit intervention) or experimental (some explicit intervention).", - "study_subject_type": "What is the actual species or entity that is experimentally or observationally studied in the research; each HEAL study will have translational relevance to humans, but not all HEAL studies directly study humans.", - "study_type_design": "The overarching study type and more granular study design. Choose as many as apply." - } - }, - "properties": { - "@context": { - "type": "object", - "properties": { - "study_stage": { - "enum": [ - "https://schema.metadatacenter.org/properties/c178c428-feab-4e16-b386-c5ca0457f136" - ] - }, - "study_primary_or_secondary": { - "enum": [ - "https://schema.metadatacenter.org/properties/11ba188c-0baa-43e9-84dc-bc8c4e100a41" - ] - }, - "study_observational_or_experimental": { - "enum": [ - "https://schema.metadatacenter.org/properties/c0129f9d-e5d3-41e7-8927-9523db54ffb0" - ] - }, - "study_subject_type": { - "enum": [ - "https://schema.metadatacenter.org/properties/154c4687-6f3c-42ac-9f54-926a8357618d" - ] - }, - "study_type_design": { - "enum": [ - "https://schema.metadatacenter.org/properties/6d5c5a5d-c7bc-4d76-9b4a-1d1438624e5e" - ] - } - }, - "additionalProperties": false, - "required": [ - "study_stage", - "study_subject_type", - "study_primary_or_secondary", - "study_observational_or_experimental", - "study_type_design" - ] - }, - "@id": { - "type": "string", - "format": "uri" - }, - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "study_stage": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "study_stage field schema", - "description": "study_stage field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": false, - "literals": [ - { - "label": "Pre-Research/Protocol Development" + "treatment_application_level": { + "type": "array", + "minItems": 1, + "items": { + "type": "object", + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" }, - { - "label": "Basic Research" + "schema:description": { + "@type": "xsd:string" }, - { - "label": "Pre-Clinical Research" + "skos:prefLabel": { + "@type": "xsd:string" }, - { - "label": "Clinical Research" + "skos:altLabel": { + "@type": "xsd:string" }, - { - "label": "Implementation Research" + "pav:createdOn": { + "@type": "xsd:dateTime" }, - { - "label": "Post-market Research" + "pav:createdBy": { + "@type": "@id" }, - { - "label": "Buisness Development" + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" }, - { - "label": "Epidemiologic Research" + "oslc:modifiedBy": { + "@type": "@id" } - ] - }, - "properties": { - "@type": { - "oneOf": [ + }, + "title": "treatment_application_level field schema", + "description": "treatment_application_level field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" + }, + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": true, + "literals": [ { - "type": "string", - "format": "uri" + "label": "Individual" }, { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true + "label": "Population" } ] }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "study_stage", - "schema:description": "The category of research being conducted", - "pav:createdOn": "2022-06-02T15:07:07-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:07:07-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Category or Type/Stage of Study Research", - "@id": "https://repo.metadatacenter.org/template-fields/3a88c634-9f05-4e2e-8d6d-8850a3bd53dd", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "study_primary_or_secondary": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "study_primary_or_secondary field schema", - "description": "study_primary_or_secondary field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": false, - "literals": [ - { - "label": "Primary Research" - }, - { - "label": "Secondary Research" - } - ] - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { + "properties": { + "@type": { + "oneOf": [ + { "type": "string", "format": "uri" }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "study_primary_or_secondary", - "schema:description": "Is the study collecting data itself to analyze and draw conclusions or is it leveraging data collected by other entities to analyze and draw conclusions.", - "pav:createdOn": "2022-06-02T15:07:07-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:07:07-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Is the study conducting primary or secondary research?", - "@id": "https://repo.metadatacenter.org/template-fields/54ca8a55-23d9-43fb-bb3a-d053dbd4e82a", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "study_observational_or_experimental": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "study_observational_or_experimental field schema", - "description": "study_observational_or_experimental field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": false, - "literals": [ - { - "label": "Observational Research" + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] }, - { - "label": "Experimental Research" + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] } - ] - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "schema:name": "study_observational_or_experimental", - "schema:description": "Whether the study is observational (no explicit intervention) or experimental (some explicit intervention).", - "pav:createdOn": "2022-06-02T15:07:07-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:07:07-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Is the study conducting observational or experimental research?", - "@id": "https://repo.metadatacenter.org/template-fields/a89c824b-89c7-47a5-972e-b9b610a90652", - "$schema": "http://json-schema.org/draft-04/schema#" + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2022-06-27T11:50:55-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-06-27T11:50:55-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "treatment_application_level", + "schema:description": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION' - Is the treatment, intervention, or solution that my study is relevant to applied at the individual level (e.g. a doctor prescribes a drug or physical therapy regimen to a patient) or at the population/community/group level (e.g. a city changes good samaritan naloxone laws, or implements a safe needle exchange center, or adds park maintenance resources to the budget to provide more access to outside places to exercise)?", + "skos:prefLabel": "Is the Treatment given/applied to individuals or populations?", + "@id": "https://repo.metadatacenter.org/template-fields/db109103-07c6-4898-ade3-e5cca17ca8b9", + "$schema": "http://json-schema.org/draft-04/schema#" + } }, - "study_subject_type": { + "treatment_type": { "type": "array", "minItems": 1, "items": { "type": "object", - "@id": "https://repo.metadatacenter.org/template-fields/a7374a24-0e67-4a16-9d43-2fd152a1c6f0", "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -7611,8 +4482,8 @@ "@type": "@id" } }, - "title": "study_subject_type field schema", - "description": "study_subject_type field schema generated by the CEDAR Template Editor 2.6.18", + "title": "treatment_type field schema", + "description": "treatment_type field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { "inputType": "list" }, @@ -7621,19 +4492,82 @@ "multipleChoice": true, "literals": [ { - "label": "Human" + "label": "drug" }, { - "label": "Animal" + "label": "non-opioid drug" }, { - "label": "Human cell/tissue/tissue model" + "label": "opioid drug" }, { - "label": "Animal cell/tissue/tissue model" + "label": "non-biologic drug" }, { - "label": "Molecule (e.g. chemical/protein engineering, protein crystallization)" + "label": "biologic drug" + }, + { + "label": "non-drug" + }, + { + "label": "device" + }, + { + "label": "behavioral" + }, + { + "label": "psychotherapy" + }, + { + "label": "group therapy" + }, + { + "label": "physical therapy" + }, + { + "label": "exercise" + }, + { + "label": "education" + }, + { + "label": "community resources/supports" + }, + { + "label": "economic supports" + }, + { + "label": "housing supports" + }, + { + "label": "case management" + }, + { + "label": "environmental (indoors)" + }, + { + "label": "environmental (outdoors)" + }, + { + "label": "law/policy" + }, + { + "label": "surgical procedure" + }, + { + "label": "nutritional" + }, + { + "label": "nutritional supplement" + }, + { + "label": "gene therapy" + }, + { + "label": "immunotherapy" + }, + { + "label": "electrotherapy" } ] }, @@ -7672,23 +4606,23 @@ "@value" ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:07:07-07:00", + "pav:createdOn": "2022-06-27T11:50:55-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:07:07-07:00", + "pav:lastUpdatedOn": "2022-06-27T11:50:55-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "study_subject_type", - "schema:description": "What is the actual species or entity that is experimentally or observationally studied in the research; each HEAL study will have translational relevance to humans, but not all HEAL studies directly study humans.", - "skos:prefLabel": "Study Subject Type", + "schema:name": "treatment_type", + "schema:description": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION' - Classify the treatment, intervention, or solution the study is relevant to by broad type of intervention. Choose as many as apply", + "skos:prefLabel": "Treatment Type", + "@id": "https://repo.metadatacenter.org/template-fields/1a6249df-7d7f-4e12-92ba-b133e21a20d7", "$schema": "http://json-schema.org/draft-04/schema#" } }, - "study_type_design": { + "treatment_novelty": { "type": "array", "minItems": 1, "items": { "type": "object", - "@id": "https://repo.metadatacenter.org/template-fields/94abf96b-850d-4d2f-aa8a-c8293fab6d46", "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -7722,8 +4656,8 @@ "@type": "@id" } }, - "title": "study_type_design field schema", - "description": "study_type_design field schema generated by the CEDAR Template Editor 2.6.18", + "title": "treatment_novelty field schema", + "description": "treatment_novelty field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { "inputType": "list" }, @@ -7732,130 +4666,16 @@ "multipleChoice": true, "literals": [ { - "label": "Basic Research - Theory/Modeling" - }, - { - "label": "Basic Research - Applied" - }, - { - "label": "Basic Research - Method/Protocol development" - }, - { - "label": "Basic Research - Animal study" + "label": "Novel" }, { - "label": "Basic Research - Cell study" + "label": "Novel, added to established" }, { - "label": "Basic Research – Genetic study" + "label": "Established" }, { - "label": "Basic Research – Biochemistry study" - }, - { - "label": "Basic Research – Biophysical study" - }, - { - "label": "Basic Research – Gene sequencing" - }, - { - "label": "Basic Research – Genetic Engineering" - }, - { - "label": "Basic Research – Material Development" - }, - { - "label": "Basic Research – Device Development" - }, - { - "label": "Basic Research – Business Model Development (e.g. SBIR)" - }, - { - "label": "Basic Research – Small molecule screen" - }, - { - "label": "Basic Research – High throughput screen" - }, - { - "label": "Basic Research – Screen, other" - }, - { - "label": "Clinical Research – Phase I" - }, - { - "label": "Clinical Research – Phase II" - }, - { - "label": "Clinical Research – Phase III" - }, - { - "label": "Clinical Research – Phase IV" - }, - { - "label": "Clinical Research – Therapy/drug study without intervention" - }, - { - "label": "Clinical Research – Case Report or Series" - }, - { - "label": "Preclinical Research" - }, - { - "label": "Randomized Control Trial" - }, - { - "label": "Pre/Post" - }, - { - "label": "Stepped Wedge" - }, - { - "label": "Regression Discontinuity" - }, - { - "label": "Difference in Differences" - }, - { - "label": "Cross-over" - }, - { - "label": "Natural Experiment" - }, - { - "label": "Cohort, prospective" - }, - { - "label": "Cohort, retrospective" - }, - { - "label": "Cohort – panel, longitudinal" - }, - { - "label": "Cohort – cross-sectional, longitudinal" - }, - { - "label": "Cohort – cross-sectional, single time-point" - }, - { - "label": "Case control" - }, - { - "label": "Ecological" - }, - { - "label": "Monitoring/surveillance" - }, - { - "label": "Meta-analysis" - }, - { - "label": "Review" - }, - { - "label": "Review, Systematic" - }, - { - "label": "Review, Simple (narrative)" + "label": "Established, used in novel population, setting, or combination" } ] }, @@ -7894,42 +4714,44 @@ "@value" ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:07:07-07:00", + "pav:createdOn": "2022-06-27T11:50:55-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:07:07-07:00", + "pav:lastUpdatedOn": "2022-06-27T11:50:55-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "study_type_design", - "schema:description": "The overarching study type and more granular study design. Choose as many as apply.", - "skos:prefLabel": "Study Type/Design", + "schema:name": "treatment_novelty", + "schema:description": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION' - Is the treatment, intervention, or solution that my study is relevant to totally novel, is it totally established, does it have some element of novelty added to an established intervention (novel added to established, established used in a novel population, setting, or combination)?", + "skos:prefLabel": "Treatment Novelty", + "@id": "https://repo.metadatacenter.org/template-fields/55a71319-4451-41d1-8a60-67b44ddb57a3", "$schema": "http://json-schema.org/draft-04/schema#" } } }, - "schema:name": "Study Type", - "schema:description": "", + "schema:name": "Human Treatment Applicability", + "schema:description": "NOT APPLICABLE IF STUDY TRANSLATIONAL FOCUS IS NOT 'TREATMENT OF A CONDITION'", "required": [ "@context", "@id", - "study_stage", - "study_subject_type", - "study_primary_or_secondary", - "study_observational_or_experimental", - "study_type_design" + "treatment_investigation_stage_or_type", + "treatment_mode", + "treatment_novelty", + "treatment_application_level", + "treatment_type" ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", + "pav:createdOn": "2024-02-01T06:42:00-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "pav:version": "0.0.1", - "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/c2117bde-f626-4a6f-9ca5-848e206eaa49", - "@id": "https://repo.metadatacenter.org/template-elements/b13fda90-615f-42ea-9828-334176e1ffbe", + "pav:version": "0.0.2", + "bibo:status": "bibo:draft", + "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/5f7a8f5f-245f-4953-9d9b-bec107155919", + "pav:previousVersion": "https://repo.metadatacenter.org/template-elements/4c14aca8-ffe5-46b7-a8bb-08748b9216dd", + "@id": "https://repo.metadatacenter.org/template-elements/c27d53f4-b2dd-4244-b775-144044827a94", "$schema": "http://json-schema.org/draft-04/schema#" }, - "Human Treatment Apply": { + "Study Translational Focus": { "@type": "https://schema.metadatacenter.org/core/TemplateElement", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -7957,68 +4779,41 @@ } }, "type": "object", - "title": "Human treatment apply element schema", - "description": "Human treatment apply element schema generated by the CEDAR Template Editor 2.6.19", + "title": "Study translational focus element schema", + "description": "Study translational focus element schema generated by the CEDAR Template Editor 2.6.19", "_ui": { "order": [ - "treatment_investigation_stage_or_type", - "treatment_mode", - "treatment_novelty", - "treatment_application_level", - "treatment_type" + "study_translational_focus", + "study_translational_topic_grouping" ], "propertyLabels": { - "treatment_investigation_stage_or_type": "treatment_investigation_stage_or_type", - "treatment_mode": "treatment_mode", - "treatment_application_level": "treatment_application_level", - "treatment_type": "treatment_type", - "treatment_novelty": "treatment_novelty" + "study_translational_topic_grouping": "study_translational_topic_grouping", + "study_translational_focus": "study_translational_focus" }, "propertyDescriptions": { - "treatment_investigation_stage_or_type": "If the study is investigating a treatment, intervention, or solution to a human opioid or pain condition, what type of investigation is the study undertaking?", - "treatment_mode": "Is the treatment, intervention, or solution that my study is relevant to meant to prevent the occurrance of a condition (e.g. development of a non-opioid drug for pain to prevent opioid exposure and addiction, case management and MAT for pregnant women to prevent in utero exposure to opioids, safe needle exchange center to prevent spread of blood borne diseases among people using heroin), treat an occurrance of a condition (e.g. naloxone to treat opioid overdose, physical therapy to treat existing pain from a back injury) , and/or is it a harm reduction mechanism (e.g. safe needle exchange reduces harm associated with heroin addiction/use, decriminalization of heroin possession or use reduces the harm associated with heroin addiction/use)", - "treatment_application_level": "Is the treatment, intervention, or solution that my study is relevant to applied at the individual level (e.g. a doctor prescribes a drug or physical therapy regimen to a patient) or at the population/community/group level (e.g. a city changes good samaritan naloxone laws, or implements a safe needle exchange center, or adds park maintenance resources to the budget to provide more access to outside places to exercise)?", - "treatment_type": "Classify the treatment, intervention, or solution the study is relevant to by broad type of intervention. Choose as many as apply", - "treatment_novelty": "Is the treatment, intervention, or solution that my study is relevant to totally novel, is it totally established, does it have some element of novelty added to an established intervention (novel added to established, established used in a novel population, setting, or combination)?" + "study_translational_topic_grouping": "What types of determinants and/or mechanisms related to human opioid use or pain conditions is the study investigating and/or measuring (e.g. A study investigating differential pain/nociception signaling in persons living in neighborhoods with high versus low social cohesion might choose both 'Biology and Health' and 'Social Determinants'). Choose as many as apply.", + "study_translational_focus": "Whether the study is primarily focused on learning more about a human opioid or pain CONDITION or on discovering, or learning more about a TREATMENT OF A CONDITION, intervention, or solution for a human opioid or pain condition. This may be quite simple to infer for human subject studies. For studies not involving human subjects, please consider how/where the study will most substantially contribute to the HEAL Initiative translational purpose of learning more about human opioid and pain conditions and driving development of solutions to these conditions. An example of a study focusing on the treatment of a condition is The National Drug Abuse Treatment Clinical Trials Network, where the primary focus is testing pharmacologic and behavioral strategies to improve Opioid Use Disorder pharmacotherapy treatment retention and outcomes. Whereas an example of a study focusing on a specific condition is the Neuroplasticity in Maternal Opioid Use Disorder study, where the end goal is to validate the importance of taking advantage of the neuroplasticity in the perinatal period to optimize outcomes for mothers with OUD.Choose one." } }, "properties": { "@context": { "type": "object", "properties": { - "treatment_investigation_stage_or_type": { - "enum": [ - "https://schema.metadatacenter.org/properties/b6108e07-a471-449d-9a13-2c9a24384424" - ] - }, - "treatment_mode": { - "enum": [ - "https://schema.metadatacenter.org/properties/648f1627-d787-4abe-9fff-5d6628b143b7" - ] - }, - "treatment_application_level": { - "enum": [ - "https://schema.metadatacenter.org/properties/ba361d44-0ce2-475a-b1ae-e52f78a6606b" - ] - }, - "treatment_type": { + "study_translational_topic_grouping": { "enum": [ - "https://schema.metadatacenter.org/properties/6aa00a53-272b-40b1-8749-422fafc4661b" + "https://schema.metadatacenter.org/properties/3642f6be-ec33-414d-ace1-fe5c7c5e10e6" ] }, - "treatment_novelty": { + "study_translational_focus": { "enum": [ - "https://schema.metadatacenter.org/properties/d1342545-4fcb-48b0-a3c1-06e7a487d3c6" + "https://schema.metadatacenter.org/properties/55184a53-bd1d-449f-a0f8-9df12476224a" ] } }, "additionalProperties": false, "required": [ - "treatment_investigation_stage_or_type", - "treatment_mode", - "treatment_novelty", - "treatment_application_level", - "treatment_type" + "study_translational_focus", + "study_translational_topic_grouping" ] }, "@id": { @@ -8042,7 +4837,7 @@ } ] }, - "treatment_investigation_stage_or_type": { + "study_translational_topic_grouping": { "type": "array", "minItems": 1, "items": { @@ -8080,8 +4875,8 @@ "@type": "@id" } }, - "title": "treatment_investigation_stage_or_type field schema", - "description": "treatment_investigation_stage_or_type field schema generated by the CEDAR Template Editor 2.6.18", + "title": "study_translational_topic_grouping field schema", + "description": "study_translational_topic_grouping field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { "inputType": "list" }, @@ -8090,28 +4885,16 @@ "multipleChoice": true, "literals": [ { - "label": "target discovery" - }, - { - "label": "target mechanism" - }, - { - "label": "treatment discovery" - }, - { - "label": "treatment mechanism" - }, - { - "label": "treatment efficacy" + "label": "Biology and Health" }, { - "label": "differential treatment efficacy" + "label": "Mental Health" }, { - "label": "treatment implementation" + "label": "Social Determinants" }, { - "label": "treatment availability or accessibility" + "label": "Public Attitudes or Stigma" } ] }, @@ -8150,532 +4933,166 @@ "@value" ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:07:54-07:00", + "pav:createdOn": "2022-09-01T12:16:45-07:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:07:54-07:00", + "pav:lastUpdatedOn": "2022-09-01T12:16:45-07:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "treatment_investigation_stage_or_type", - "schema:description": "If the study is investigating a treatment, intervention, or solution to a human opioid or pain condition, what type of investigation is the study undertaking?", - "skos:prefLabel": "Treatment Investigation Stage or Type", - "@id": "https://repo.metadatacenter.org/template-fields/f56ae296-fdff-438f-aa94-e7cff7250a25", + "schema:name": "study_translational_topic_grouping", + "schema:description": "What types of determinants and/or mechanisms related to human opioid use or pain conditions is the study investigating and/or measuring (e.g. A study investigating differential pain/nociception signaling in persons living in neighborhoods with high versus low social cohesion might choose both 'Biology and Health' and 'Social Determinants'). Choose as many as apply.", + "skos:prefLabel": "Types of determinants/mechanisms the study is investigating", + "@id": "https://repo.metadatacenter.org/template-fields/12acc429-e084-49d5-9ce1-3d88245a07df", "$schema": "http://json-schema.org/draft-04/schema#" } }, - "treatment_mode": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } + "study_translational_focus": { + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" }, - "title": "treatment_mode field schema", - "description": "treatment_mode field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" + "schema:description": { + "@type": "xsd:string" }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": true, - "literals": [ - { - "label": "Preventive (prevention of an occurrence)" - }, - { - "label": "Therapeutic (treating an occurrence)" - }, - { - "label": "Harm Reduction (preventing more of an occurrence, or preventing harm from an occurrence)" - } - ] + "skos:prefLabel": { + "@type": "xsd:string" }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } + "skos:altLabel": { + "@type": "xsd:string" }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:07:54-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:07:54-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "treatment_mode", - "schema:description": "Is the treatment, intervention, or solution that my study is relevant to meant to prevent the occurrance of a condition (e.g. development of a non-opioid drug for pain to prevent opioid exposure and addiction, case management and MAT for pregnant women to prevent in utero exposure to opioids, safe needle exchange center to prevent spread of blood borne diseases among people using heroin), treat an occurrance of a condition (e.g. naloxone to treat opioid overdose, physical therapy to treat existing pain from a back injury) , and/or is it a harm reduction mechanism (e.g. safe needle exchange reduces harm associated with heroin addiction/use, decriminalization of heroin possession or use reduces the harm associated with heroin addiction/use)", - "skos:prefLabel": "Treatment Mode", - "@id": "https://repo.metadatacenter.org/template-fields/38c5014c-b0fc-4a4f-b5ae-32c5198f56dc", - "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "treatment_application_level": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } + "pav:createdOn": { + "@type": "xsd:dateTime" }, - "title": "treatment_application_level field schema", - "description": "treatment_application_level field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" + "pav:createdBy": { + "@type": "@id" }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": true, - "literals": [ + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, + "type": "object", + "title": "study_translational_focus field schema", + "description": "study_translational_focus field schema generated by the CEDAR Template Editor 2.6.19", + "_ui": { + "inputType": "list" + }, + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": false, + "literals": [ + { + "label": "Condition" + }, + { + "label": "Treatment of a Condition" + } + ] + }, + "properties": { + "@type": { + "oneOf": [ { - "label": "Individual" + "type": "string", + "format": "uri" }, { - "label": "Population" - } - ] - }, - "properties": { - "@type": { - "oneOf": [ - { + "type": "array", + "minItems": 1, + "items": { "type": "string", "format": "uri" }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:07:54-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:07:54-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "treatment_application_level", - "schema:description": "Is the treatment, intervention, or solution that my study is relevant to applied at the individual level (e.g. a doctor prescribes a drug or physical therapy regimen to a patient) or at the population/community/group level (e.g. a city changes good samaritan naloxone laws, or implements a safe needle exchange center, or adds park maintenance resources to the budget to provide more access to outside places to exercise)?", - "skos:prefLabel": "Is the Treatment given/applied to individuals or populations?", - "@id": "https://repo.metadatacenter.org/template-fields/db109103-07c6-4898-ade3-e5cca17ca8b9", - "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "treatment_type": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } + "uniqueItems": true + } + ] }, - "title": "treatment_type field schema", - "description": "treatment_type field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" + "@value": { + "type": [ + "string", + "null" + ] }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": true, - "literals": [ - { - "label": "drug" - }, - { - "label": "non-opioid drug" - }, - { - "label": "opioid drug" - }, - { - "label": "non-biologic drug" - }, - { - "label": "biologic drug" - }, - { - "label": "non-drug" - }, - { - "label": "device" - }, - { - "label": "behavioral" - }, - { - "label": "psychotherapy" - }, - { - "label": "group therapy" - }, - { - "label": "physical therapy" - }, - { - "label": "exercise" - }, - { - "label": "education" - }, - { - "label": "community resources/supports" - }, - { - "label": "economic supports" - }, - { - "label": "housing supports" - }, - { - "label": "case management" - }, - { - "label": "environmental (indoors)" - }, - { - "label": "environmental (outdoors)" - }, - { - "label": "law/policy" - }, - { - "label": "surgical procedure" - }, - { - "label": "nutritional" - }, - { - "label": "nutritional supplement" - }, - { - "label": "gene therapy" - }, - { - "label": "immunotherapy" - }, - { - "label": "electrotherapy" - } - ] - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:07:54-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:07:54-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "treatment_type", - "schema:description": "Classify the treatment, intervention, or solution the study is relevant to by broad type of intervention. Choose as many as apply", - "skos:prefLabel": "Treatment Type", - "@id": "https://repo.metadatacenter.org/template-fields/1a6249df-7d7f-4e12-92ba-b133e21a20d7", - "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "treatment_novelty": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "title": "treatment_novelty field schema", - "description": "treatment_novelty field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": true, - "literals": [ - { - "label": "Novel" - }, - { - "label": "Novel, added to established" - }, - { - "label": "Established" - }, - { - "label": "Established, used in novel population, setting, or combination" - } + "rdfs:label": { + "type": [ + "string", + "null" ] - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:07:54-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:07:54-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "treatment_novelty", - "schema:description": "Is the treatment, intervention, or solution that my study is relevant to totally novel, is it totally established, does it have some element of novelty added to an established intervention (novel added to established, established used in a novel population, setting, or combination)?", - "skos:prefLabel": "Treatment Novelty", - "@id": "https://repo.metadatacenter.org/template-fields/55a71319-4451-41d1-8a60-67b44ddb57a3", - "$schema": "http://json-schema.org/draft-04/schema#" - } + } + }, + "required": [ + "@value" + ], + "schema:name": "study_translational_focus", + "schema:description": "Whether the study is primarily focused on learning more about a human opioid or pain CONDITION or on discovering, or learning more about a TREATMENT OF A CONDITION, intervention, or solution for a human opioid or pain condition. This may be quite simple to infer for human subject studies. For studies not involving human subjects, please consider how/where the study will most substantially contribute to the HEAL Initiative translational purpose of learning more about human opioid and pain conditions and driving development of solutions to these conditions. An example of a study focusing on the treatment of a condition is The National Drug Abuse Treatment Clinical Trials Network, where the primary focus is testing pharmacologic and behavioral strategies to improve Opioid Use Disorder pharmacotherapy treatment retention and outcomes. Whereas an example of a study focusing on a specific condition is the Neuroplasticity in Maternal Opioid Use Disorder study, where the end goal is to validate the importance of taking advantage of the neuroplasticity in the perinatal period to optimize outcomes for mothers with OUD.Choose one.", + "pav:createdOn": "2022-09-01T12:16:45-07:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2022-09-01T12:16:45-07:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "skos:prefLabel": "Study Translational Focus", + "@id": "https://repo.metadatacenter.org/template-fields/624f2e6f-4632-4ecb-b680-c1a8a23ad50a", + "$schema": "http://json-schema.org/draft-04/schema#" } }, - "schema:name": "Human Treatment Apply", + "schema:name": "Study Translational Focus", "schema:description": "", "required": [ "@context", "@id", - "treatment_investigation_stage_or_type", - "treatment_mode", - "treatment_novelty", - "treatment_application_level", - "treatment_type" + "study_translational_focus", + "study_translational_topic_grouping" ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", + "pav:createdOn": "2024-02-01T06:42:00-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "pav:version": "0.0.1", - "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/5f7a8f5f-245f-4953-9d9b-bec107155919", - "@id": "https://repo.metadatacenter.org/template-elements/4c14aca8-ffe5-46b7-a8bb-08748b9216dd", + "pav:version": "0.0.3", + "bibo:status": "bibo:draft", + "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/95b3318d-2abb-4424-81af-27dfc3343555", + "pav:previousVersion": "https://repo.metadatacenter.org/template-elements/bd987dd6-052e-456e-85d0-9a026aeed295", + "@id": "https://repo.metadatacenter.org/template-elements/67a0d897-3c7c-4c6f-8ce0-97b80477b3a5", + "$schema": "http://json-schema.org/draft-04/schema#" + }, + "documentation_link": { + "@type": "https://schema.metadatacenter.org/core/StaticTemplateField", + "@context": { + "schema": "http://schema.org/", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#" + }, + "type": "object", + "title": "documentation_link field schema", + "description": "documentation_link field schema generated by the CEDAR Template Editor 2.6.19", + "_ui": { + "inputType": "section-break", + "_content": null + }, + "pav:createdOn": "2024-02-01T06:42:00-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:description": "For guidance on completing this form, please visit: https://bit.ly/HEAL-CEDAR", + "additionalProperties": false, + "schema:name": "documentation_link", + "@id": "https://repo.metadatacenter.org/template-fields/f9fc16f3-3dc8-48c0-8891-68b236e48c0f", + "skos:prefLabel": "For guidance on completing this form, please visit: https://bit.ly/HEAL-CEDAR", "$schema": "http://json-schema.org/draft-04/schema#" }, - "Human Condition Apply": { + "Minimal Info": { "@type": "https://schema.metadatacenter.org/core/TemplateElement", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -8703,86 +5120,59 @@ } }, "type": "object", - "title": "Human condition apply element schema", - "description": "Human condition apply element schema generated by the CEDAR Template Editor 2.6.19", + "title": "Minimal info element schema", + "description": "Minimal info element schema generated by the CEDAR Template Editor 2.6.19", "_ui": { "order": [ - "condition_category", - "condition_investigation_stage_or_type", - "pain_causal_condition", - "pain_treatment_or_study_target_condition", - "all_treatment_or_study_target_condition", - "all_outcome_condition", - "all_other_condition" + "study_name", + "study_description", + "alternative_study_name", + "alternative_study_description" ], "propertyLabels": { - "condition_category": "condition_category", - "condition_investigation_stage_or_type": "condition_investigation_stage_or_type", - "pain_causal_condition": "pain_causal_condition", - "pain_treatment_or_study_target_condition": "pain_treatment_or_study_target_condition", - "all_treatment_or_study_target_condition": "all_treatment_or_study_target_condition", - "all_outcome_condition": "all_outcome_condition", - "all_other_condition": "all_other_condition" + "study_name": "study_name", + "study_description": "study_description", + "alternative_study_name": "alternative_study_name", + "alternative_study_description": "alternative_study_description" }, "propertyDescriptions": { - "condition_category": "Considering the study in a translational context, to humans with which broad category(ies) of opioid use or pain conditions are the study results intended to apply. Choose as many as apply.", - "condition_investigation_stage_or_type": "Each HEAL study will be doing work that is relevant to a human opioid and/or pain condition. What does this study intend to learn about the condition? If the study is investigating a treatment, intervention, or solution, please choose 'Treatment of Condition'. Choose as many as apply.", - "pain_causal_condition": "If the study will be doing work that is relevant to a human PAIN condition category, is the study focusing on pain caused by a specific condition? e.g. Cancer, fibromyalgia, arthritis, occupational injury, sports injury, car accident, surgical procedure. If yes, please indicate the causal condition(s) here - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", - "pain_treatment_or_study_target_condition": "If the study will be doing work that is relevant to a human PAIN condition category, and the pain condition has a causal condition (specified above), is the study focusing its investigation on the causal condition, or on the pain resulting from the causal condition? e.g. In a study of effective treatments for fibromyalgia/fibromyalgia pain, is the study focused on fibromyalgia disease-modifying treatments, or on treatments that address the symptomology of pain? Choose as many as apply.", - "all_treatment_or_study_target_condition": "Considering the study in a translational context, to humans with which detailed type of opioid use or pain conditions are the study results intended to apply? Each HEAL study will be doing work that is relevant to a human opioid and/or pain condition; You indicated the broad category of condition(s) the study is focusing on or relevant to above. Here, please indicate the study focus condition(s) in detail. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", - "all_outcome_condition": "If the outcome condition(s) the study hopes to impact or measure is different than the treatment or study target condition (e.g. testing a disease-modifying fibromyaligia treatment but measuring depression, physical and social function, and neurologic pain such as headaches as the main outcomes). Please indicate the study outcome condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", - "all_other_condition": "If the study is measuring or tracking other human health conditions besides the treatment or study target condition and outcome condition, please indicate the other tracked/measured condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView" + "study_name": "The title or name of the study. For NIH-funded studies, this will generally be equivalent to the NIH application ID title.", + "study_description": "The “Study Description or Abstract” auto-populates with a short summary of your HEAL-funded study that is written by NIH HEAL Initiative staff and published on the [NIH HEAL Initiative Funded Projects website](https://heal.nih.gov/funding/awarded). If a summary of your study written by NIH HEAL Initiative staff is not available, this field will be auto-populated with the text of your study's abstract as it appears on [NIH RePORTER](https://reporter.nih.gov/). Ensure your study description is correct. If your study description is incorrect, contact heal-support@datacommons.io immediately, and do NOT proceed with filling out the CEDAR form until instructed to. Do NOT edit pre-populated fields. They will NOT save. This field will be available to free text search and discovery tools on the Platform and the text will be human readable in your study's Platform study table entry and on your study's Platform study page. This will make your study more discoverable by Platform Users, and will help the Platform Users who find your study to identify your study, learn something about it, and decide whether it is of clear interest for their purposes.", + "alternative_study_name": "Study nickname, alternative title, abbreviation, or acronym (e.g. many people shorten the name of the HEAL Adolescent Brain Cognitive Development study to ABCD).", + "alternative_study_description": "If your study is registered on ClinicalTrials.gov and you provided an NCT ID when you registered your study on the HEAL Data Platform, this field will be auto-populated with the text from your study's Detailed Description as it appears on [ClinicalTrials.gov](https://clinicaltrials.gov/). Otherwise, this field will be empty when you first open your form. This is a free text field - Type directly into the field or copy and paste into it to answer - Currently the form is configured to accept just one alternative study description. Studies can be described in many ways, at many levels of detail - use this field to provide an alternative description to one that was auto-populated in the 'Study Description' field above - an alternative description may for example include more or different details about the study. You are not required to provide an alternative study description, as the study description auto-populated from the NIH HEAL Funded Projects website or from NIH RePORTER will appear on the Platform, regardless of these alternative values. However, there are good reasons to provide one: 1.) The text is searchable via the Platform’s free-text search and discovery tools, so key terms and/or alternative study name structures (including study name acronyms) may make your study more findable, and 2.) The text may be visible on your study's Platform study page in the future, allowing users to read it and better determine whether your study is of interest. Note This field will be available to free text search and discovery tools on the Platform and the text may appear on your study's Platform study page. This will make your study more discoverable by Platform Users, and may also help the Platform Users who find your study to identify your study, learn something about it, and decide whether it is of clear interest for their purposes." } }, "properties": { "@context": { "type": "object", "properties": { - "condition_category": { - "enum": [ - "https://schema.metadatacenter.org/properties/cd67d808-e00f-40e1-9ed8-b68567fc21b1" - ] - }, - "condition_investigation_stage_or_type": { - "enum": [ - "https://schema.metadatacenter.org/properties/b5ca5722-7979-4287-b8f8-140777d15450" - ] - }, - "pain_causal_condition": { - "enum": [ - "https://schema.metadatacenter.org/properties/f8f92f34-cc40-44e1-b7b3-900968ceade2" - ] - }, - "pain_treatment_or_study_target_condition": { + "study_name": { "enum": [ - "https://schema.metadatacenter.org/properties/91cb041e-88d6-4fa5-b9bb-00fb6c881a2d" + "https://schema.metadatacenter.org/properties/e5f0a1a1-8232-43e1-b89d-d178efe5cc71" ] }, - "all_treatment_or_study_target_condition": { + "study_description": { "enum": [ - "https://schema.metadatacenter.org/properties/96b2b7c0-8abc-4802-a52d-13d9bd35e243" + "https://schema.metadatacenter.org/properties/4511545c-3a17-4a41-ae33-67be643faf4b" ] }, - "all_outcome_condition": { + "alternative_study_name": { "enum": [ - "https://schema.metadatacenter.org/properties/c763ecf1-915b-4f1f-bca8-9288a30f08fc" + "https://schema.metadatacenter.org/properties/ac7ee813-4406-4c77-b30a-b88e13d0fb15" ] }, - "all_other_condition": { + "alternative_study_description": { "enum": [ - "https://schema.metadatacenter.org/properties/55645641-6232-4b34-904a-ae05f918379a" + "https://schema.metadatacenter.org/properties/2f2c4ea4-8fd4-4fb9-bdd0-690cb070e77c" ] } }, "additionalProperties": false, "required": [ - "condition_category", - "condition_investigation_stage_or_type", - "pain_causal_condition", - "pain_treatment_or_study_target_condition", - "all_treatment_or_study_target_condition", - "all_outcome_condition", - "all_other_condition" + "study_name", + "study_description", + "alternative_study_name", + "alternative_study_description" ] }, "@id": { @@ -8806,1414 +5196,505 @@ } ] }, - "condition_category": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } + "study_name": { + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" }, - "title": "condition_category field schema", - "description": "condition_category field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" + "schema:description": { + "@type": "xsd:string" }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": true, - "literals": [ - { - "label": "Opioid use and opioid use disorder" - }, - { - "label": "Opioid use and opioid use disorder, primary occurrence" - }, - { - "label": "Opioid use and opioid use disorder, relapse" - }, - { - "label": "Opioid use and opioid use disorder, chronic" - }, - { - "label": "Opioid overdose" - }, - { - "label": "Opioid exposure" - }, - { - "label": "(Non-opioid) Substance use" - }, - { - "label": "Co-occurring (Opioid or Non-opioid) Substance use and Mental Health disorder" - }, - { - "label": "Pain" - }, - { - "label": "Pain, acute" - }, - { - "label": "Pain, chronic" - }, - { - "label": "Pain, acute to chronic transition" - }, - { - "label": "Pain, resulting from injury" - 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Each HEAL study will be doing work that is relevant to a human opioid and/or pain condition; You indicated the broad category of condition(s) the study is focusing on or relevant to above. Here, please indicate the study focus condition(s) in detail. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", - "skos:prefLabel": "Study treatment or target condition - Detail", - "@id": "https://repo.metadatacenter.org/template-fields/8300f6cd-738b-43e9-aa8d-2f7601f303da", - "$schema": "http://json-schema.org/draft-04/schema#" - } + "rdfs:label": { + "type": [ + "string", + "null" + ] + } + }, + "required": [ + "@value" + ], + "schema:name": "alternative_study_description", + "schema:description": "If your study is registered on ClinicalTrials.gov and you provided an NCT ID when you registered your study on the HEAL Data Platform, this field will be auto-populated with the text from your study's Detailed Description as it appears on [ClinicalTrials.gov](https://clinicaltrials.gov/). Otherwise, this field will be empty when you first open your form. This is a free text field - Type directly into the field or copy and paste into it to answer - Currently the form is configured to accept just one alternative study description. Studies can be described in many ways, at many levels of detail - use this field to provide an alternative description to one that was auto-populated in the 'Study Description' field above - an alternative description may for example include more or different details about the study. You are not required to provide an alternative study description, as the study description auto-populated from the NIH HEAL Funded Projects website or from NIH RePORTER will appear on the Platform, regardless of these alternative values. However, there are good reasons to provide one: 1.) The text is searchable via the Platform’s free-text search and discovery tools, so key terms and/or alternative study name structures (including study name acronyms) may make your study more findable, and 2.) The text may be visible on your study's Platform study page in the future, allowing users to read it and better determine whether your study is of interest. Note This field will be available to free text search and discovery tools on the Platform and the text may appear on your study's Platform study page. This will make your study more discoverable by Platform Users, and may also help the Platform Users who find your study to identify your study, learn something about it, and decide whether it is of clear interest for their purposes.", + "pav:createdOn": "2023-02-07T10:18:55-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2023-02-07T10:18:55-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "skos:prefLabel": "Alternative Study Description or Abstract", + "@id": "https://repo.metadatacenter.org/template-fields/2b63f07f-f903-4218-90c6-08aee6f7e45f", + "$schema": "http://json-schema.org/draft-04/schema#" + } + }, + "schema:name": "Minimal Info", + "schema:description": "", + "required": [ + "@context", + "@id", + "study_name", + "study_description", + "alternative_study_name", + "alternative_study_description" + ], + "pav:createdOn": "2024-02-01T06:42:00-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "pav:version": "0.0.4", + "bibo:status": "bibo:draft", + "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/232c87ee-251e-455d-80ce-37a97c8ff1f9", + "pav:previousVersion": "https://repo.metadatacenter.org/template-elements/dca84a17-a6a7-4759-8d13-b33e9db30061", + "@id": "https://repo.metadatacenter.org/template-elements/ef15ed8d-709d-4f4b-9a07-0952e739b73b", + "$schema": "http://json-schema.org/draft-04/schema#" + }, + "Study Type": { + "@type": "https://schema.metadatacenter.org/core/TemplateElement", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "schema:name": { + "@type": "xsd:string" }, - "all_outcome_condition": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } + "schema:description": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, + "type": "object", + "title": "Study type element schema", + "description": "Study type element schema generated by the CEDAR Template Editor 2.6.19", + "_ui": { + "order": [ + "study_stage", + "study_primary_or_secondary", + "study_observational_or_experimental", + "study_subject_type", + "study_type_design" + ], + "propertyLabels": { + "study_stage": "study_stage", + "study_primary_or_secondary": "study_primary_or_secondary", + "study_observational_or_experimental": "study_observational_or_experimental", + "study_subject_type": "study_subject_type", + "study_type_design": "study_type_design" + }, + "propertyDescriptions": { + "study_stage": "The category of research being conducted", + "study_primary_or_secondary": "Is the study collecting data itself to analyze and draw conclusions or is it leveraging data collected by other entities to analyze and draw conclusions.", + "study_observational_or_experimental": "Whether the study is observational (no explicit intervention) or experimental (some explicit intervention).", + "study_subject_type": "What is the actual species or entity that is experimentally or observationally studied in the research; each HEAL study will have translational relevance to humans, but not all HEAL studies directly study humans.", + "study_type_design": "The overarching study type and more granular study design. Choose as many as apply." + } + }, + "properties": { + "@context": { + "type": "object", + "properties": { + "study_stage": { + "enum": [ + "https://schema.metadatacenter.org/properties/c178c428-feab-4e16-b386-c5ca0457f136" + ] }, - "title": "all_outcome_condition field schema", - "description": "all_outcome_condition field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "textfield" + "study_primary_or_secondary": { + "enum": [ + "https://schema.metadatacenter.org/properties/11ba188c-0baa-43e9-84dc-bc8c4e100a41" + ] }, - "_valueConstraints": { - "requiredValue": false, - "ontologies": [ - { - "numTerms": 348658, - "acronym": "MESH", - "name": "Medical Subject Headings", - "uri": "https://data.bioontology.org/ontologies/MESH" - } - ], - "valueSets": [], - "classes": [], - "branches": [], - "multipleChoice": false + "study_observational_or_experimental": { + "enum": [ + "https://schema.metadatacenter.org/properties/c0129f9d-e5d3-41e7-8927-9523db54ffb0" + ] }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - }, - "@id": { - "type": "string", - "format": "uri" - } - }, - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:08:36-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:08:36-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "all_outcome_condition", - "schema:description": "If the outcome condition(s) the study hopes to impact or measure is different than the treatment or study target condition (e.g. testing a disease-modifying fibromyaligia treatment but measuring depression, physical and social function, and neurologic pain such as headaches as the main outcomes). Please indicate the study outcome condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", - "skos:prefLabel": "Study outcome condition - Detail", - "@id": "https://repo.metadatacenter.org/template-fields/578e31da-42f1-4e3e-aca3-3bc035de776e", - "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "all_other_condition": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "title": "all_other_condition field schema", - "description": "all_other_condition field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "textfield" - }, - "_valueConstraints": { - "requiredValue": false, - "ontologies": [ - { - "numTerms": 348658, - "acronym": "MESH", - "name": "Medical Subject Headings", - "uri": "https://data.bioontology.org/ontologies/MESH" - } - ], - "valueSets": [], - "classes": [], - "branches": [], - "multipleChoice": false - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - }, - "@id": { - "type": "string", - "format": "uri" - } - }, - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:08:36-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:08:36-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "all_other_condition", - "schema:description": "If the study is measuring or tracking other human health conditions besides the treatment or study target condition and outcome condition, please indicate the other tracked/measured condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView", - "skos:prefLabel": "Other measured or tracked conditions - Detail", - "@id": "https://repo.metadatacenter.org/template-fields/708363ac-88aa-4584-88d1-811a55f24c8d", - "$schema": "http://json-schema.org/draft-04/schema#" - } - } - }, - "schema:name": "Human Condition Apply", - "schema:description": "", - "required": [ - "@context", - "@id", - "condition_category", - "condition_investigation_stage_or_type", - "pain_causal_condition", - "pain_treatment_or_study_target_condition", - "all_treatment_or_study_target_condition", - "all_outcome_condition", - "all_other_condition" - ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "pav:version": "0.0.1", - "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/a7dc9f41-e588-4a82-8cca-8987fbc6123a", - "@id": "https://repo.metadatacenter.org/template-elements/a3770036-0d57-4d17-a710-b2f3e13bb4b4", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "Human Subjects Apply": { - "@type": "https://schema.metadatacenter.org/core/TemplateElement", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "Human subjects apply element schema", - "description": "Human subjects apply element schema generated by the CEDAR Template Editor 2.6.19", - "_ui": { - "order": [ - "gender_applicability", - "sexual_identity_applicability", - "age_applicability", - "irb_vulnerability_conditions_applicability", - "geographic_applicability" - ], - "propertyLabels": { - "gender_applicability": "gender_applicability", - "sexual_identity_applicability": "sexual_identity_applicability", - "geographic_applicability": "geographic_applicability", - "irb_vulnerability_conditions_applicability": "irb_vulnerability_conditions_applicability", - "age_applicability": "age_applicability" - }, - "propertyDescriptions": { - "gender_applicability": "Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to", - "sexual_identity_applicability": "Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to", - "geographic_applicability": "For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited", - "irb_vulnerability_conditions_applicability": "Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to?", - "age_applicability": "Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to." - } - }, - "properties": { - "@context": { - "type": "object", - "properties": { - "gender_applicability": { - "enum": [ - "https://schema.metadatacenter.org/properties/8d1fe685-884e-4b58-9a25-c11b53abd020" - ] - }, - "sexual_identity_applicability": { - "enum": [ - "https://schema.metadatacenter.org/properties/2e51e553-d90b-4b6f-8a52-f8a1c3359444" - ] - }, - "geographic_applicability": { - 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"@type": "@id" - } - }, - "title": "gender_applicability field schema", - "description": "gender_applicability field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": true, - "literals": [ - { - "label": "Cis Male" - }, - { - "label": "Cis Female" - }, - { - "label": "Trans Male" - }, - { - "label": "Trans Female" - }, - { - "label": "Agender, Non-binary, gender non-conforming" - }, - { - "label": "Gender Queer" - }, - { - "label": "Intersex" - }, - { - "label": "Not applicable" - } - ] - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:10:02-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:10:02-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "gender_applicability", - "schema:description": "Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to", - "skos:prefLabel": "To humans of which gender identity(ies) do study results apply?", - "@id": "https://repo.metadatacenter.org/template-fields/a10e3c0c-a1a8-4550-9631-4b697a8f4c7d", - "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "sexual_identity_applicability": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "title": "sexual_identity_applicability field schema", - "description": "sexual_identity_applicability field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": true, - "literals": [ - { - "label": "Heterosexual" - }, - { - "label": "Homosexual" - }, - { - "label": "Bisexual" - }, - { - "label": "Pansexual" - }, - { - "label": "Queer" - }, - { - "label": "Asexual" - }, - { - "label": "Not applicable" - } - ] - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:10:02-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:10:02-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "sexual_identity_applicability", - "schema:description": "Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to", - "skos:prefLabel": "To humans of which sexual identity(ies) do study results apply?", - "@id": "https://repo.metadatacenter.org/template-fields/02f8e3e6-389f-4f5e-a49f-f848d8c7702d", - "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "geographic_applicability": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "title": "geographic_applicability field schema", - "description": "geographic_applicability field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": true, - "literals": [ - { - "label": "Non US" - }, - { - "label": "US - National" - }, - { - "label": "US - Specific States" - }, - { - "label": "US - Specific Counties" - }, - { - "label": "AK" - }, - { - "label": "AL" - }, - { - "label": "AR" - }, - { - "label": "AZ" - }, - { - "label": "CA" - }, - { - "label": "CO" - }, - { - "label": "CT" - }, - { - "label": "DE" - }, - { - "label": "FL" - }, - { - "label": "GA" - }, - { - "label": "HI" - }, - { - "label": "IA" - }, - { - "label": "ID" - }, - { - "label": "IL" - }, - { - "label": "IN" - }, - { - "label": "KS" - }, - { - "label": "KY" - }, - { - "label": "LA" - }, - { - "label": "MA" - }, - { - "label": "MD" - }, - { - "label": "ME" - }, - { - "label": "MI" - }, - { - "label": "MN" - }, - { - "label": "MO" - }, - { - "label": "MS" - }, - { - "label": "MT" - }, - { - "label": "NC" - }, - { - "label": "ND" - }, - { - "label": "NE" - }, - { - "label": "NH" - }, - { - "label": "NJ" - }, - { - "label": "NM" - }, - { - "label": "NV" - }, - { - "label": "NY" - }, - { - "label": "OH" - }, - { - "label": "OK" - }, - { - "label": "OR" - }, - { - "label": "PA" - }, - { - "label": "RI" - }, - { - "label": "SC" - }, - { - "label": "SD" - }, - { - "label": "TN" - }, - { - "label": "TX" - }, - { - "label": "UT" - }, - { - "label": "VA" - }, - { - "label": "VT" - }, - { - "label": "WA" - }, - { - "label": "WI" - }, - { - "label": "WV" - }, - { - "label": "WY" - } - ] + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:10:02-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:10:02-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "geographic_applicability", - "schema:description": "For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited", - "skos:prefLabel": "To humans of which age/developmental stage do study results apply?", - "@id": "https://repo.metadatacenter.org/template-fields/312e4246-1372-4e16-96e0-7ee7d1dec574", - "$schema": "http://json-schema.org/draft-04/schema#" - } + "uniqueItems": true + } + ] }, - "irb_vulnerability_conditions_applicability": { + "study_stage": { "type": "array", "minItems": 1, "items": { "type": "object", + "@id": "https://repo.metadatacenter.org/template-fields/3a88c634-9f05-4e2e-8d6d-8850a3bd53dd", "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -10247,8 +5728,8 @@ "@type": "@id" } }, - "title": "irb_vulnerability_conditions_applicability field schema", - "description": "irb_vulnerability_conditions_applicability field schema generated by the CEDAR Template Editor 2.6.18", + "title": "study_stage field schema", + "description": "study_stage field schema generated by the CEDAR Template Editor 2.6.19", "_ui": { "inputType": "list" }, @@ -10257,40 +5738,28 @@ "multipleChoice": true, "literals": [ { - "label": "Pregnant women" - }, - { - "label": "Human fetuses" - }, - { - "label": "Neonates" - }, - { - "label": "Prisoners" + "label": "Pre-Research/Protocol Development" }, { - "label": "Children" - }, - { - "label": "Individuals with physical disabilities" + "label": "Basic Research" }, { - "label": "Individuals with mental disabilities or cognitive impairments" + "label": "Pre-Clinical Research" }, { - "label": "Economically disadvantaged" + "label": "Clinical Research" }, { - "label": "Socially disadvantaged" + "label": "Implementation Research" }, { - "label": "Terminally ill or very sick" + "label": "Post-market Research" }, { - "label": "Racial or ethnic minorities" + "label": "Buisness Development" }, { - "label": "Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)" + "label": "Epidemiologic Research" } ] }, @@ -10325,27 +5794,223 @@ ] } }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:10:02-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:10:02-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "irb_vulnerability_conditions_applicability", - "schema:description": "Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to?", - "skos:prefLabel": "To humans in which special vulnerability categories do study results apply?", - "@id": "https://repo.metadatacenter.org/template-fields/4bbd3386-06fe-4578-bcf6-388900b7439c", - "$schema": "http://json-schema.org/draft-04/schema#" - } + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2023-02-07T07:36:09-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2023-02-07T07:36:09-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "study_stage", + "schema:description": "The category of research being conducted", + "skos:prefLabel": "Category or Type/Stage of Study Research", + "$schema": "http://json-schema.org/draft-04/schema#" + } + }, + "study_primary_or_secondary": { + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, + "type": "object", + "title": "study_primary_or_secondary field schema", + "description": "study_primary_or_secondary field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" + }, + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": false, + "literals": [ + { + "label": "Primary Research" + }, + { + "label": "Secondary Research" + } + ] + }, + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } + }, + "required": [ + "@value" + ], + "schema:name": "study_primary_or_secondary", + "schema:description": "Is the study collecting data itself to analyze and draw conclusions or is it leveraging data collected by other entities to analyze and draw conclusions.", + "pav:createdOn": "2023-02-07T07:36:09-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2023-02-07T07:36:09-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "skos:prefLabel": "Is the study conducting primary or secondary research?", + "@id": "https://repo.metadatacenter.org/template-fields/54ca8a55-23d9-43fb-bb3a-d053dbd4e82a", + "$schema": "http://json-schema.org/draft-04/schema#" + }, + "study_observational_or_experimental": { + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, + "type": "object", + "title": "study_observational_or_experimental field schema", + "description": "study_observational_or_experimental field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" + }, + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": false, + "literals": [ + { + "label": "Observational Research" + }, + { + "label": "Experimental Research" + } + ] + }, + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } + }, + "required": [ + "@value" + ], + "schema:name": "study_observational_or_experimental", + "schema:description": "Whether the study is observational (no explicit intervention) or experimental (some explicit intervention).", + "pav:createdOn": "2023-02-07T07:36:09-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2023-02-07T07:36:09-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "skos:prefLabel": "Is the study conducting observational or experimental research?", + "@id": "https://repo.metadatacenter.org/template-fields/a89c824b-89c7-47a5-972e-b9b610a90652", + "$schema": "http://json-schema.org/draft-04/schema#" }, - "age_applicability": { + "study_subject_type": { "type": "array", "minItems": 1, "items": { "type": "object", + "@id": "https://repo.metadatacenter.org/template-fields/a7374a24-0e67-4a16-9d43-2fd152a1c6f0", "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -10379,8 +6044,8 @@ "@type": "@id" } }, - "title": "age_applicability field schema", - "description": "age_applicability field schema generated by the CEDAR Template Editor 2.6.18", + "title": "study_subject_type field schema", + "description": "study_subject_type field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { "inputType": "list" }, @@ -10389,34 +6054,19 @@ "multipleChoice": true, "literals": [ { - "label": "Fetus" - }, - { - "label": "Infant, newborn (Birth to 1 month)" - }, - { - "label": "Infant (1 to 23 months)" - }, - { - "label": "Child, preschool (2 to 5 years)" - }, - { - "label": "Child (6 to 12 years)" - }, - { - "label": "Adolescent (13 to 18 years)" + "label": "Human" }, { - "label": "Adult (19 to 44 years)" + "label": "Animal" }, { - "label": "Middle aged adult (45 to 64 years)" + "label": "Human cell/tissue/tissue model" }, { - "label": "Aged adult (65 to 79 years)" + "label": "Animal cell/tissue/tissue model" }, { - "label": "Aged, 80 and over (80 years and over)" + "label": "Molecule (e.g. chemical/protein engineering, protein crystallization)" } ] }, @@ -10451,209 +6101,27 @@ ] } }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:10:02-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:10:02-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "age_applicability", - "schema:description": "Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to.", - "skos:prefLabel": "To humans of which age/developmental stage do study results apply?", - "@id": "https://repo.metadatacenter.org/template-fields/ca4cb3de-19ab-4e23-a6a7-57f6a8d240d9", - "$schema": "http://json-schema.org/draft-04/schema#" - } - } - }, - "schema:name": "Human Subjects Apply", - "schema:description": "", - "required": [ - "@context", - "@id", - "gender_applicability", - "sexual_identity_applicability", - "geographic_applicability", - "irb_vulnerability_conditions_applicability", - "age_applicability" - ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "pav:version": "0.0.1", - "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/22cb2c8e-dea3-4e26-9dfd-a0dc61c1e27b", - "@id": "https://repo.metadatacenter.org/template-elements/0ccf77c3-b837-48e3-b538-7aabd0b49df1", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "Data": { - "@type": "https://schema.metadatacenter.org/core/TemplateElement", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "Data element schema", - "description": "Data element schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "order": [ - "data_orientation", - "data_source", - "data_type", - "subject_data_unit_of_collection", - "subject_data_unit_of_collection_expected_number", - "subject_data_unit_of_analysis", - "subject_data_unit_of_analysis_expected_number", - "subject_data_level_available", - "subject_geographic_data_level_collected", - "subject_geographic_data_level_available" - ], - "propertyLabels": { - "subject_data_unit_of_collection": "subject_data_unit_of_collection", - "subject_data_unit_of_analysis": "subject_data_unit_of_analysis", - "subject_data_level_available": "subject_data_level_available", - "subject_data_unit_of_collection_expected_number": "subject_data_unit_of_collection_expected_number", - "subject_data_unit_of_analysis_expected_number": "subject_data_unit_of_analysis_expected_number", - "subject_geographic_data_level_collected": "subject_geographic_data_level_collected", - "subject_geographic_data_level_available": "subject_geographic_data_level_available", - "data_orientation": "data_orientation", - "data_type": "data_type", - "data_source": "data_source" - }, - "propertyDescriptions": { - "subject_data_unit_of_collection": "For studies with human subjects, is the data collected at the individual or population level?", - "subject_data_unit_of_analysis": "For studies with human subjects, is the data analyzed at the individual or population level?", - "subject_data_level_available": "For studies with human subjects that will make at least some data available, will data be made available at the individual subject level or some level of aggregation?", - "subject_data_unit_of_collection_expected_number": "For studies with human subjects, what is the expected number of subjects for which data will be collected? If unit of data collection is individuals this is the expected number of individuals, and if the unit of data collection is populations/clusters this is the expected number of populations/clusters.", - "subject_data_unit_of_analysis_expected_number": "For studies with human subjects, what is the expected number of subjects at the level at which data will be analyzed? If unit of data analysis is individuals this is the expected number of individuals, and if the unit of data analysis is populations/clusters this is the expected number of populations/clusters.", - "subject_geographic_data_level_collected": "For studies with human subjects, will geographic data be collected? if so, what level of geographic detail will be collected?", - "subject_geographic_data_level_available": "For studies with human subjects that collect geographic data and will make at least some data available, will geographic data be made available? if so, what level of geographic detail will be made available?", - "data_orientation": "Does the study produce/collect quantitative data?, qualitative data? Choose as many as apply.", - "data_type": "What is the type of the data the study will produce/collect. Choose as many as apply.", - "data_source": "What is the source of the data the study will produce/collect. Choose as many as apply." - } - }, - "properties": { - "@context": { - "type": "object", - "properties": { - "subject_data_unit_of_collection": { - "enum": [ - "https://schema.metadatacenter.org/properties/c45b0841-4c50-4d5b-be49-eed993313621" - ] - }, - "subject_data_unit_of_analysis": { - "enum": [ - "https://schema.metadatacenter.org/properties/deb7a1ed-f021-4049-a652-8d93eac22919" - ] - }, - "subject_data_level_available": { - "enum": [ - "https://schema.metadatacenter.org/properties/a2a4dfeb-2ff5-4b2d-b0b1-c7a5b4115c90" - ] - }, - "subject_data_unit_of_collection_expected_number": { - "enum": [ - "https://schema.metadatacenter.org/properties/ebdf8513-cf96-4c41-ae89-a69e5dcb1dbf" - ] - }, - "subject_data_unit_of_analysis_expected_number": { - "enum": [ - "https://schema.metadatacenter.org/properties/cd41aebd-4134-4feb-9544-9ce1ba2f1f23" - ] - }, - "subject_geographic_data_level_collected": { - "enum": [ - "https://schema.metadatacenter.org/properties/d9ed6775-3a89-4798-8022-866ac6c7508d" - ] - }, - "subject_geographic_data_level_available": { - "enum": [ - "https://schema.metadatacenter.org/properties/77092eaa-e48c-4418-a367-d6716b5a1f0b" - ] - }, - "data_orientation": { - "enum": [ - "https://schema.metadatacenter.org/properties/0de3ec6b-f3e9-4aa9-a367-b2205eefb92d" - ] - }, - "data_type": { - "enum": [ - "https://schema.metadatacenter.org/properties/7a3d7b6c-fb4f-44a3-ac86-852b692b6458" - ] - }, - "data_source": { - "enum": [ - "https://schema.metadatacenter.org/properties/4182e91d-60fc-49c8-b9bd-3721affbeced" - ] - } - }, - "additionalProperties": false, - "required": [ - "subject_data_unit_of_collection", - "subject_data_unit_of_analysis", - "subject_data_level_available", - "subject_data_unit_of_collection_expected_number", - "subject_data_unit_of_analysis_expected_number", - "subject_geographic_data_level_collected", - "subject_geographic_data_level_available", - "data_orientation", - "data_type", - "data_source" - ] - }, - "@id": { - "type": "string", - "format": "uri" - }, - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2023-02-07T07:36:09-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2023-02-07T07:36:09-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "study_subject_type", + "schema:description": "What is the actual species or entity that is experimentally or observationally studied in the research; each HEAL study will have translational relevance to humans, but not all HEAL studies directly study humans.", + "skos:prefLabel": "Study Subject Type", + "$schema": "http://json-schema.org/draft-04/schema#" + } }, - "subject_data_unit_of_collection": { + "study_type_design": { "type": "array", "minItems": 1, "items": { "type": "object", + "@id": "https://repo.metadatacenter.org/template-fields/94abf96b-850d-4d2f-aa8a-c8293fab6d46", "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -10687,8 +6155,8 @@ "@type": "@id" } }, - "title": "subject_data_unit_of_collection field schema", - "description": "subject_data_unit_of_collection field schema generated by the CEDAR Template Editor 2.6.18", + "title": "study_type_design field schema", + "description": "study_type_design field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { "inputType": "list" }, @@ -10697,10 +6165,130 @@ "multipleChoice": true, "literals": [ { - "label": "Individual" + "label": "Basic Research - Theory/Modeling" }, { - "label": "Community, Group, Cluster, Population" + "label": "Basic Research - Applied" + }, + { + "label": "Basic Research - Method/Protocol development" + }, + { + "label": "Basic Research - Animal study" + }, + { + "label": "Basic Research - Cell study" + }, + { + "label": "Basic Research – Genetic study" + }, + { + "label": "Basic Research – Biochemistry study" + }, + { + "label": "Basic Research – Biophysical study" + }, + { + "label": "Basic Research – Gene sequencing" + }, + { + "label": "Basic Research – Genetic Engineering" + }, + { + "label": "Basic Research – Material Development" + }, + { + "label": "Basic Research – Device Development" + }, + { + "label": "Basic Research – Business Model Development (e.g. SBIR)" + }, + { + "label": "Basic Research – Small molecule screen" + }, + { + "label": "Basic Research – High throughput screen" + }, + { + "label": "Basic Research – Screen, other" + }, + { + "label": "Clinical Research – Phase I" + }, + { + "label": "Clinical Research – Phase II" + }, + { + "label": "Clinical Research – Phase III" + }, + { + "label": "Clinical Research – Phase IV" + }, + { + "label": "Clinical Research – Therapy/drug study without intervention" + }, + { + "label": "Clinical Research – Case Report or Series" + }, + { + "label": "Preclinical Research" + }, + { + "label": "Randomized Control Trial" + }, + { + "label": "Pre/Post" + }, + { + "label": "Stepped Wedge" + }, + { + "label": "Regression Discontinuity" + }, + { + "label": "Difference in Differences" + }, + { + "label": "Cross-over" + }, + { + "label": "Natural Experiment" + }, + { + "label": "Cohort, prospective" + }, + { + "label": "Cohort, retrospective" + }, + { + "label": "Cohort – panel, longitudinal" + }, + { + "label": "Cohort – cross-sectional, longitudinal" + }, + { + "label": "Cohort – cross-sectional, single time-point" + }, + { + "label": "Case control" + }, + { + "label": "Ecological" + }, + { + "label": "Monitoring/surveillance" + }, + { + "label": "Meta-analysis" + }, + { + "label": "Review" + }, + { + "label": "Review, Systematic" + }, + { + "label": "Review, Simple (narrative)" } ] }, @@ -10739,121 +6327,165 @@ "@value" ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdOn": "2023-02-07T07:36:09-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "pav:lastUpdatedOn": "2023-02-07T07:36:09-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "subject_data_unit_of_collection", - "schema:description": "For studies with human subjects, is the data collected at the individual or population level?", - "skos:prefLabel": "Human Subject Data - Unit of Collection", - "@id": "https://repo.metadatacenter.org/template-fields/575ca7f9-f105-4ee2-8371-924a47e4627b", + "schema:name": "study_type_design", + "schema:description": "The overarching study type and more granular study design. Choose as many as apply.", + "skos:prefLabel": "Study Type/Design", "$schema": "http://json-schema.org/draft-04/schema#" } + } + }, + "schema:name": "Study Type", + "schema:description": "", + "required": [ + "@context", + "@id", + "study_stage", + "study_subject_type", + "study_primary_or_secondary", + "study_observational_or_experimental", + "study_type_design" + ], + "pav:createdOn": "2024-02-01T06:42:00-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "additionalProperties": false, + "pav:version": "0.0.4", + "bibo:status": "bibo:draft", + "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/c2117bde-f626-4a6f-9ca5-848e206eaa49", + "pav:previousVersion": "https://repo.metadatacenter.org/template-elements/b13fda90-615f-42ea-9828-334176e1ffbe", + "@id": "https://repo.metadatacenter.org/template-elements/b54fa415-5ddd-4dbc-8c6f-93cb59bdc212", + "$schema": "http://json-schema.org/draft-04/schema#" + }, + "Human Subject Applicability": { + "@type": "https://schema.metadatacenter.org/core/TemplateElement", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "schema:name": { + "@type": "xsd:string" }, - "subject_data_unit_of_analysis": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } + "schema:description": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } + }, + "type": "object", + "title": "Human subject applicability element schema", + "description": "Human subject applicability element schema generated by the CEDAR Template Editor 2.6.49", + "_ui": { + "order": [ + "gender_applicability", + "sexual_identity_applicability", + "biological_sex_applicability", + "age_applicability", + "irb_vulnerability_conditions_applicability", + "geographic_applicability" + ], + "propertyLabels": { + "irb_vulnerability_conditions_applicability": "irb_vulnerability_conditions_applicability", + "age_applicability": "age_applicability", + "geographic_applicability": "geographic_applicability", + "sexual_identity_applicability": "sexual_identity_applicability", + "biological_sex_applicability": "biological_sex_applicability", + "gender_applicability": "gender_applicability" + }, + "propertyDescriptions": { + "irb_vulnerability_conditions_applicability": "Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to?", + "age_applicability": "Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to.", + "geographic_applicability": "For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited.", + "sexual_identity_applicability": "Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to.", + "biological_sex_applicability": "Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to.", + "gender_applicability": "Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to." + } + }, + "properties": { + "@context": { + "type": "object", + "properties": { + "irb_vulnerability_conditions_applicability": { + "enum": [ + "https://schema.metadatacenter.org/properties/b3f1e63b-447d-4aaf-ac03-3cff035a7f58" + ] }, - "title": "subject_data_unit_of_analysis field schema", - "description": "subject_data_unit_of_analysis field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" + "age_applicability": { + "enum": [ + "https://schema.metadatacenter.org/properties/0a659aab-cde0-4f5e-a7e6-ae7d6b9745ec" + ] }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": true, - "literals": [ - { - "label": "Individual" - }, - { - "label": "Community, Group, Cluster, Population" - } + "geographic_applicability": { + "enum": [ + "https://schema.metadatacenter.org/properties/fde0145f-de8b-4875-9ab5-1c6dc2f1d9f4" ] }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } + "sexual_identity_applicability": { + "enum": [ + "https://schema.metadatacenter.org/properties/310ec9a1-096b-4c45-9453-0bb617800397" + ] }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:11:25-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "subject_data_unit_of_analysis", - "schema:description": "For studies with human subjects, is the data analyzed at the individual or population level?", - "skos:prefLabel": "Human Subject Data - Unit of Analysis", - "@id": "https://repo.metadatacenter.org/template-fields/1a2a5819-edb2-4b4a-aaa8-ef62babde26e", - "$schema": "http://json-schema.org/draft-04/schema#" - } + "biological_sex_applicability": { + "enum": [ + "https://schema.metadatacenter.org/properties/f9f7c83f-f218-4e10-ab62-fd145e8ad4c1" + ] + }, + "gender_applicability": { + "enum": [ + "https://schema.metadatacenter.org/properties/5529ad6f-8b89-4caf-bfda-c85caf6d513a" + ] + } + }, + "additionalProperties": false, + "required": [ + "irb_vulnerability_conditions_applicability", + "age_applicability", + "geographic_applicability", + "sexual_identity_applicability", + "gender_applicability", + "biological_sex_applicability" + ] }, - "subject_data_level_available": { + "@id": { + "type": "string", + "format": "uri" + }, + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "irb_vulnerability_conditions_applicability": { "type": "array", "minItems": 1, "items": { @@ -10891,8 +6523,8 @@ "@type": "@id" } }, - "title": "subject_data_level_available field schema", - "description": "subject_data_level_available field schema generated by the CEDAR Template Editor 2.6.18", + "title": "irb_vulnerability_conditions_applicability field schema", + "description": "irb_vulnerability_conditions_applicability field schema generated by the CEDAR Template Editor 2.6.18", "_ui": { "inputType": "list" }, @@ -10901,34 +6533,40 @@ "multipleChoice": true, "literals": [ { - "label": "Individual - Unaggregated" + "label": "Pregnant women" }, { - "label": "Individual - Aggregated" + "label": "Human fetuses" }, { - "label": "Community, Group, Cluster, Population - Unaggregated" + "label": "Neonates" }, { - "label": "Community, Group, Cluster, Population - Aggregated" + "label": "Prisoners" }, { - "label": "Unaggregated" + "label": "Children" }, { - "label": "Aggregated" + "label": "Individuals with physical disabilities" }, { - "label": "Aggregated, across all (population summary statistics)" + "label": "Individuals with mental disabilities or cognitive impairments" }, { - "label": "Aggregated, by treatment/exposure group" + "label": "Economically disadvantaged" }, { - "label": "Aggregated, by demographic variable(s)" + "label": "Socially disadvantaged" }, { - "label": "Aggregated, by geographic variable(s)" + "label": "Terminally ill or very sick" + }, + { + "label": "Racial or ethnic minorities" + }, + { + "label": "Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)" } ] }, @@ -10967,179 +6605,150 @@ "@value" ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdOn": "2024-02-01T05:22:42-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "pav:lastUpdatedOn": "2024-02-01T05:22:42-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "subject_data_level_available", - "schema:description": "For studies with human subjects that will make at least some data available, will data be made available at the individual subject level or some level of aggregation?", - "skos:prefLabel": "Human Subject Data - Individual or Aggregated Data made available?", - "@id": "https://repo.metadatacenter.org/template-fields/22cd3f38-fc2f-4f5a-aa8b-d6ba6b24291f", + "schema:name": "irb_vulnerability_conditions_applicability", + "schema:description": "Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to?", + "skos:prefLabel": "Do the results of your study have special applicability for humans of specific vulnerability condition(s)? If so, mark all special vulnerability condition(s) for which the results of your study have special applicability.", + "@id": "https://repo.metadatacenter.org/template-fields/4bbd3386-06fe-4578-bcf6-388900b7439c", "$schema": "http://json-schema.org/draft-04/schema#" } }, - "subject_data_unit_of_collection_expected_number": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "subject_data_unit_of_collection_expected_number field schema", - "description": "subject_data_unit_of_collection_expected_number field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "numeric" - }, - "_valueConstraints": { - "requiredValue": false, - "numberType": "xsd:int" - }, - "properties": { - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - }, - "@type": { - "type": "string", - "format": "uri" - } - }, - "required": [ - "@value", - "@type" - ], - "schema:name": "subject_data_unit_of_collection_expected_number", - "schema:description": "For studies with human subjects, what is the expected number of subjects for which data will be collected? If unit of data collection is individuals this is the expected number of individuals, and if the unit of data collection is populations/clusters this is the expected number of populations/clusters.", - "pav:createdOn": "2022-06-02T15:11:25-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Human Subject Data - Expected Number of the Unit of Collection", - "@id": "https://repo.metadatacenter.org/template-fields/e6bc8396-d2fe-4140-b23c-a294e48ef100", - "$schema": "http://json-schema.org/draft-04/schema#" - }, - "subject_data_unit_of_analysis_expected_number": { - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" + "age_applicability": { + "type": "array", + "minItems": 1, + "items": { + "type": "object", + "@type": "https://schema.metadatacenter.org/core/TemplateField", + "@context": { + "xsd": "http://www.w3.org/2001/XMLSchema#", + "pav": "http://purl.org/pav/", + "bibo": "http://purl.org/ontology/bibo/", + "oslc": "http://open-services.net/ns/core#", + "schema": "http://schema.org/", + "skos": "http://www.w3.org/2004/02/skos/core#", + "schema:name": { + "@type": "xsd:string" + }, + "schema:description": { + "@type": "xsd:string" + }, + "skos:prefLabel": { + "@type": "xsd:string" + }, + "skos:altLabel": { + "@type": "xsd:string" + }, + "pav:createdOn": { + "@type": "xsd:dateTime" + }, + "pav:createdBy": { + "@type": "@id" + }, + "pav:lastUpdatedOn": { + "@type": "xsd:dateTime" + }, + "oslc:modifiedBy": { + "@type": "@id" + } }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" + "title": "age_applicability field schema", + "description": "age_applicability field schema generated by the CEDAR Template Editor 2.6.18", + "_ui": { + "inputType": "list" }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "type": "object", - "title": "subject_data_unit_of_analysis_expected_number field schema", - "description": "subject_data_unit_of_analysis_expected_number field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "numeric" - }, - "_valueConstraints": { - "requiredValue": false, - "numberType": "xsd:int" - }, - "properties": { - "@value": { - "type": [ - "string", - "null" + "_valueConstraints": { + "requiredValue": false, + "multipleChoice": true, + "literals": [ + { + "label": "Fetus" + }, + { + "label": "Infant, newborn (Birth to 1 month)" + }, + { + "label": "Infant (1 to 23 months)" + }, + { + "label": "Child, preschool (2 to 5 years)" + }, + { + "label": "Child (6 to 12 years)" + }, + { + "label": "Adolescent (13 to 18 years)" + }, + { + "label": "Adult (19 to 44 years)" + }, + { + "label": "Middle aged adult (45 to 64 years)" + }, + { + "label": "Aged adult (65 to 79 years)" + }, + { + "label": "Aged, 80 and over (80 years and over)" + } ] }, - "rdfs:label": { - "type": [ - "string", - "null" - ] + "properties": { + "@type": { + "oneOf": [ + { + "type": "string", + "format": "uri" + }, + { + "type": "array", + "minItems": 1, + "items": { + "type": "string", + "format": "uri" + }, + "uniqueItems": true + } + ] + }, + "@value": { + "type": [ + "string", + "null" + ] + }, + "rdfs:label": { + "type": [ + "string", + "null" + ] + } }, - "@type": { - "type": "string", - "format": "uri" - } - }, - "required": [ - "@value", - "@type" - ], - "schema:name": "subject_data_unit_of_analysis_expected_number", - "schema:description": "For studies with human subjects, what is the expected number of subjects at the level at which data will be analyzed? If unit of data analysis is individuals this is the expected number of individuals, and if the unit of data analysis is populations/clusters this is the expected number of populations/clusters.", - "pav:createdOn": "2022-06-02T15:11:25-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "additionalProperties": false, - "skos:prefLabel": "Human Subject Data - Expected Number of the Unit of Analysis", - "@id": "https://repo.metadatacenter.org/template-fields/e8e7080a-97c4-4d16-b28b-049e090d9a96", - "$schema": "http://json-schema.org/draft-04/schema#" + "required": [ + "@value" + ], + "additionalProperties": false, + "pav:createdOn": "2024-02-01T05:22:42-08:00", + "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "pav:lastUpdatedOn": "2024-02-01T05:22:42-08:00", + "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", + "schema:schemaVersion": "1.6.0", + "schema:name": "age_applicability", + "schema:description": "Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to.", + "skos:prefLabel": "Do the results of your study have special applicability for humans of specific age/developmental stage(s)? If so, mark all age/developmental stage(s) for which the results of your study have special applicability.", + "@id": "https://repo.metadatacenter.org/template-fields/ca4cb3de-19ab-4e23-a6a7-57f6a8d240d9", + "$schema": "http://json-schema.org/draft-04/schema#" + } }, - "subject_geographic_data_level_collected": { + "geographic_applicability": { "type": "array", "minItems": 1, "items": { "type": "object", + "@id": "https://repo.metadatacenter.org/template-fields/02f82741-9e64-4b70-bb0a-74da4dee34bb", "@type": "https://schema.metadatacenter.org/core/TemplateField", "@context": { "xsd": "http://www.w3.org/2001/XMLSchema#", @@ -11173,8 +6782,8 @@ "@type": "@id" } }, - "title": "subject_geographic_data_level_collected field schema", - "description": "subject_geographic_data_level_collected field schema generated by the CEDAR Template Editor 2.6.18", + "title": "geographic_applicability field schema", + "description": "geographic_applicability field schema generated by the CEDAR Template Editor 2.6.19", "_ui": { "inputType": "list" }, @@ -11183,160 +6792,166 @@ "multipleChoice": true, "literals": [ { - "label": "Exact location" + "label": "Non-US" + }, + { + "label": "US - National" + }, + { + "label": "US - Specific states" + }, + { + "label": "US - Specific counties" + }, + { + "label": "AK" + }, + { + "label": "AL" + }, + { + "label": "AR" + }, + { + "label": "AZ" + }, + { + "label": "CA" + }, + { + "label": "CO" + }, + { + "label": "CT" + }, + { + "label": "DE" + }, + { + "label": "FL" + }, + { + "label": "GA" + }, + { + "label": "HI" + }, + { + "label": "IA" + }, + { + "label": "ID" + }, + { + "label": "IL" + }, + { + "label": "IN" + }, + { + "label": "KS" + }, + { + "label": "KY" + }, + { + "label": "LA" + }, + { + "label": "MA" + }, + { + "label": "MD" + }, + { + "label": "ME" + }, + { + "label": "MI" + }, + { + "label": "MN" + }, + { + "label": "MO" + }, + { + "label": "MS" + }, + { + "label": "MT" + }, + { + "label": "NC" + }, + { + "label": "ND" + }, + { + "label": "NE" }, { - "label": "Census block" + "label": "NH" }, { - "label": "Census tract" + "label": "NJ" }, { - "label": "Zip code" + "label": "NM" }, { - "label": "County" + "label": "NV" }, { - "label": "Sub-state region" + "label": "NY" }, { - "label": "State" + "label": "OH" }, { - "label": "Multi-state region" + "label": "OK" }, { - "label": "Nation" + "label": "OR" }, { - "label": "No geographic data will be collected" - } - ] - }, - "properties": { - "@type": { - "oneOf": [ - { - "type": "string", - "format": "uri" - }, - { - "type": "array", - "minItems": 1, - "items": { - "type": "string", - "format": "uri" - }, - "uniqueItems": true - } - ] - }, - "@value": { - "type": [ - "string", - "null" - ] - }, - "rdfs:label": { - "type": [ - "string", - "null" - ] - } - }, - "required": [ - "@value" - ], - "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:11:25-07:00", - "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", - "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "schema:schemaVersion": "1.6.0", - "schema:name": "subject_geographic_data_level_collected", - "schema:description": "For studies with human subjects, will geographic data be collected? if so, what level of geographic detail will be collected?", - "skos:prefLabel": "Human Subject Geographic Data - Collected at what level of detail?", - "@id": "https://repo.metadatacenter.org/template-fields/8c58a9a6-26f2-4985-89e0-cdcf2f960343", - "$schema": "http://json-schema.org/draft-04/schema#" - } - }, - "subject_geographic_data_level_available": { - "type": "array", - "minItems": 1, - "items": { - "type": "object", - "@type": "https://schema.metadatacenter.org/core/TemplateField", - "@context": { - "xsd": "http://www.w3.org/2001/XMLSchema#", - "pav": "http://purl.org/pav/", - "bibo": "http://purl.org/ontology/bibo/", - "oslc": "http://open-services.net/ns/core#", - "schema": "http://schema.org/", - "skos": "http://www.w3.org/2004/02/skos/core#", - "schema:name": { - "@type": "xsd:string" - }, - "schema:description": { - "@type": "xsd:string" - }, - "skos:prefLabel": { - "@type": "xsd:string" - }, - "skos:altLabel": { - "@type": "xsd:string" - }, - "pav:createdOn": { - "@type": "xsd:dateTime" - }, - "pav:createdBy": { - "@type": "@id" - }, - "pav:lastUpdatedOn": { - "@type": "xsd:dateTime" - }, - "oslc:modifiedBy": { - "@type": "@id" - } - }, - "title": "subject_geographic_data_level_available field schema", - "description": "subject_geographic_data_level_available field schema generated by the CEDAR Template Editor 2.6.18", - "_ui": { - "inputType": "list" - }, - "_valueConstraints": { - "requiredValue": false, - "multipleChoice": true, - "literals": [ + "label": "PA" + }, { - "label": "Exact location" + "label": "RI" }, { - "label": "Census block" + "label": "SC" }, { - "label": "Census tract" + "label": "SD" }, { - "label": "Zip code" + "label": "TN" }, { - "label": "County" + "label": "TX" }, { - "label": "Sub-state region" + "label": "UT" }, { - "label": "State" + "label": "VA" }, { - "label": "Multi-state region" + "label": "VT" }, { - "label": "Nation" + "label": "WA" }, { - "label": "No geographic data will be made available" + "label": "WI" + }, + { + "label": "WV" + }, + { + "label": "WY" } ] }, @@ -11375,19 +6990,18 @@ "@value" ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdOn": "2024-02-01T05:22:42-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "pav:lastUpdatedOn": "2024-02-01T05:22:42-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "subject_geographic_data_level_available", - "schema:description": "For studies with human subjects that collect geographic data and will make at least some data available, will geographic data be made available? if so, what level of geographic detail will be made available?", - "skos:prefLabel": "Human Subject Geographic Data - Available at what level of detail?", - "@id": "https://repo.metadatacenter.org/template-fields/6a3e348f-6e83-4293-a17b-bc5194e62cca", + "schema:name": "geographic_applicability", + "schema:description": "For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited.", + "skos:prefLabel": "Human Subject Studies: Where do human subjects of the study reside or obtain care during the course of the study - To humans in which geographical locations do the study results apply?", "$schema": "http://json-schema.org/draft-04/schema#" } }, - "data_orientation": { + "sexual_identity_applicability": { "type": "array", "minItems": 1, "items": { @@ -11425,8 +7039,8 @@ "@type": "@id" } }, - "title": "data_orientation field schema", - "description": "data_orientation field schema generated by the CEDAR Template Editor 2.6.18", + "title": "sexual_identity_applicability field schema", + "description": "sexual_identity_applicability field schema generated by the CEDAR Template Editor 2.6.19", "_ui": { "inputType": "list" }, @@ -11435,10 +7049,19 @@ "multipleChoice": true, "literals": [ { - "label": "Quantitative" + "label": "Heterosexual" }, { - "label": "Qualitative" + "label": "Homosexual (gay/lesbian)" + }, + { + "label": "Bisexual" + }, + { + "label": "Asexual" + }, + { + "label": "Other" } ] }, @@ -11477,19 +7100,19 @@ "@value" ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdOn": "2024-02-01T05:22:42-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "pav:lastUpdatedOn": "2024-02-01T05:22:42-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "data_orientation", - "schema:description": "Does the study produce/collect quantitative data?, qualitative data? Choose as many as apply.", - "skos:prefLabel": "Is data quantitative or qualitative?", - "@id": "https://repo.metadatacenter.org/template-fields/711b566e-5b61-4611-9c88-c8b2ea7a1c6b", + "schema:name": "sexual_identity_applicability", + "schema:description": "Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to.", + "skos:prefLabel": "Do the results of your study have special applicability for humans of specific sexual identity(s)? If so, mark all sexual identity(s) for which the results of your study have special applicability.", + "@id": "https://repo.metadatacenter.org/template-fields/a4c76b3c-058d-49ba-8967-a79842ddb4c9", "$schema": "http://json-schema.org/draft-04/schema#" } }, - "data_type": { + "biological_sex_applicability": { "type": "array", "minItems": 1, "items": { @@ -11527,8 +7150,8 @@ "@type": "@id" } }, - "title": "data_type field schema", - "description": "data_type field schema generated by the CEDAR Template Editor 2.6.18", + "title": "biological_sex_applicability field schema", + "description": "biological_sex_applicability field schema generated by the CEDAR Template Editor 2.6.19", "_ui": { "inputType": "list" }, @@ -11537,40 +7160,13 @@ "multipleChoice": true, "literals": [ { - "label": "Genomic" - }, - { - "label": "Proteomic" - }, - { - "label": "Biochemical" - }, - { - "label": "Biophysical" - }, - { - "label": "Imaging" - }, - { - "label": "Interview/Focus Group" - }, - { - "label": "Interview/Focus Group - structured" - }, - { - "label": "Interview/Focus Group - semi-structured" - }, - { - "label": "Interview/Focus Group - unstructured" + "label": "Ambiguous" }, { - "label": "Questionnaire/Survey/Assessment" - }, - { - "label": "Questionnaire/Survey/Assessment - validated instrument" + "label": "Female" }, { - "label": "Questionnaire/Survey/Assessment - unvalidated instrument" + "label": "Male" } ] }, @@ -11609,19 +7205,19 @@ "@value" ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdOn": "2024-02-01T05:22:42-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "pav:lastUpdatedOn": "2024-02-01T05:22:42-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "data_type", - "schema:description": "What is the type of the data the study will produce/collect. Choose as many as apply.", - "skos:prefLabel": "Data Type", - "@id": "https://repo.metadatacenter.org/template-fields/3b1d1bb3-ded2-4985-9917-464344e34299", + "schema:name": "biological_sex_applicability", + "schema:description": "Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to.", + "skos:prefLabel": "Do the results of your study have special applicability for humans of specific biological sex(s)? If so, mark all biological sex(s) for which the results of your study have special applicability.", + "@id": "https://repo.metadatacenter.org/template-fields/e415027a-a8bc-4654-87f2-ef90cda97985", "$schema": "http://json-schema.org/draft-04/schema#" } }, - "data_source": { + "gender_applicability": { "type": "array", "minItems": 1, "items": { @@ -11659,8 +7255,8 @@ "@type": "@id" } }, - "title": "data_source field schema", - "description": "data_source field schema generated by the CEDAR Template Editor 2.6.18", + "title": "gender_applicability field schema", + "description": "gender_applicability field schema generated by the CEDAR Template Editor 2.6.19", "_ui": { "inputType": "list" }, @@ -11669,22 +7265,22 @@ "multipleChoice": true, "literals": [ { - "label": "Administrative" + "label": "Female" }, { - "label": "Government Collected/Measured" + "label": "Transgender woman/trans woman/male-to-female (MTF)" }, { - "label": "Clinical/EHR" + "label": "Male" }, { - "label": "Laboratory" + "label": "Transgender man/trans man/female-to-male (FTM)" }, { - "label": "Researcher Collected/Measured" + "label": "Genderqueer/gender nonconforming/neither exclusively male nor female" }, { - "label": "Patient-Reported" + "label": "Other" } ] }, @@ -11723,45 +7319,42 @@ "@value" ], "additionalProperties": false, - "pav:createdOn": "2022-06-02T15:11:25-07:00", + "pav:createdOn": "2024-02-01T05:22:42-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:11:25-07:00", + "pav:lastUpdatedOn": "2024-02-01T05:22:42-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", - "schema:name": "data_source", - "schema:description": "What is the source of the data the study will produce/collect. Choose as many as apply.", - "skos:prefLabel": "Source of Data", - "@id": "https://repo.metadatacenter.org/template-fields/472a3b9e-4763-4a24-b0ec-af465345d820", + "schema:name": "gender_applicability", + "schema:description": "Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to.", + "skos:prefLabel": "Do the results of your study have special applicability for humans of specific gender identity(s)? If so, mark all gender identity(s) for which the results of your study have special applicability.", + "@id": "https://repo.metadatacenter.org/template-fields/fc95cd90-f13a-4d56-8e02-360eb6e1b2ef", "$schema": "http://json-schema.org/draft-04/schema#" } } }, - "schema:name": "Data", + "schema:name": "Human Subject Applicability", "schema:description": "", "required": [ "@context", "@id", - "subject_data_unit_of_collection", - "subject_data_unit_of_analysis", - "subject_data_level_available", - "subject_data_unit_of_collection_expected_number", - "subject_data_unit_of_analysis_expected_number", - "subject_geographic_data_level_collected", - "subject_geographic_data_level_available", - "data_orientation", - "data_type", - "data_source" + "irb_vulnerability_conditions_applicability", + "age_applicability", + "geographic_applicability", + "sexual_identity_applicability", + "gender_applicability", + "biological_sex_applicability" ], - "pav:createdOn": "2022-06-02T15:19:57-07:00", + "pav:createdOn": "2024-02-01T06:42:00-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "pav:version": "0.0.1", + "pav:version": "0.0.5", "bibo:status": "bibo:published", - "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/86aeaad2-a59a-44a6-ad52-49ed509da1fb", - "@id": "https://repo.metadatacenter.org/template-elements/62b35d48-26ad-4401-9e96-92e421ce9686", + "pav:derivedFrom": "https://repo.metadatacenter.org/template-elements/22cb2c8e-dea3-4e26-9dfd-a0dc61c1e27b", + "pav:previousVersion": "https://repo.metadatacenter.org/template-elements/2a7b7dd2-bae0-4ec2-a71b-563f4b4d95ad", + "@id": "https://repo.metadatacenter.org/template-elements/c3dd3ad7-23e6-4e68-9653-aa539f61a116", "$schema": "http://json-schema.org/draft-04/schema#" } }, @@ -11775,29 +7368,28 @@ "pav:createdBy", "pav:lastUpdatedOn", "oslc:modifiedBy", - "Minimal Info", - "Metadata Location", - "Citation", - "Contacts and Registrants", "Data Availability", - "Findings", - "Study Translation Focus", + "Human Condition Applicability", + "Data", + "Metadata Location", + "Human Treatment Applicability", + "Study Translational Focus", + "Minimal Info", "Study Type", - "Human Treatment Apply", - "Human Condition Apply", - "Human Subjects Apply", - "Data" + "Human Subject Applicability" ], "schema:name": "HEAL Study Core Metadata", - "schema:description": "", - "pav:createdOn": "2022-06-02T15:18:21-07:00", + "schema:description": "form for HEAL studies with a Treatment translational focus; includes Human Treatment Applicability element", + "pav:createdOn": "2024-02-01T05:24:02-08:00", "pav:createdBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", - "pav:lastUpdatedOn": "2022-06-02T15:19:57-07:00", + "pav:lastUpdatedOn": "2024-02-01T06:42:00-08:00", "oslc:modifiedBy": "https://metadatacenter.org/users/ec4fa0b9-fb83-4b34-8d55-190ecda4ffd4", "schema:schemaVersion": "1.6.0", "additionalProperties": false, - "pav:version": "0.0.1", + "pav:version": "0.0.5", "bibo:status": "bibo:published", - "schema:identifier": "heal_study_core_metadata", + "pav:derivedFrom": "https://repo.metadatacenter.org/templates/d01330c7-ccd1-4e99-856a-86e08937347c", + "pav:previousVersion": "https://repo.metadatacenter.org/templates/6e32fba6-0571-48ab-8c0e-1ea8868a3b45", + "@id": "https://repo.metadatacenter.org/templates/dd915db3-f094-45ea-9670-a60c9ea14464", "$schema": "http://json-schema.org/draft-04/schema#" } \ No newline at end of file diff --git a/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema-for-humans_cedar_subset.md b/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema-for-humans_cedar_subset.md index f426004..b8dfb42 100644 --- a/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema-for-humans_cedar_subset.md +++ b/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema-for-humans_cedar_subset.md @@ -11,7 +11,7 @@ - **`alternative_study_description`** *(string)*: An alternative description of or abstract for the study. - Generally, for studies with an NIH appl id, if this field is filled out, the text will be searchable on the Platform, but the NIH appl id abstract text will be the study description displayed for the study in the Platform study table entry. - **`metadata_location`** *(object)* - **`nih_application_id`** *(string)*: NIH application ID; only applicable if study is funded by NIH. - - **`other_study_websites`** *(array)*: any other websites officially associated with this study that provide additional information about the study. + - **`other_study_websites`** *(array)*: Other websites officially associated with this study that provide additional information about the study. - **Items** *(string)*: Refer to *#/definitions/saneUrl*. - **`data_availability`** *(object)* - **`produce_data`** *(boolean)*: Indicate whether or not the study will collect/produce (primary or secondary) data. @@ -37,6 +37,19 @@ - **Items** *(string)*: Must be one of: `['Human', 'Animal', 'Human cell/tissue/tissue model', 'Animal cell/tissue/tissue model', 'Molecule (e.g. chemical/protein engineering, protein crystallization)']`. - **`study_type_design`** *(array)*: The overarching study type and more granular study design. Choose as many as apply. - **Items** *(string)*: Must be one of: `['Basic Research - Theory/Modeling', 'Basic Research - Applied', 'Basic Research - Method/Protocol development', 'Basic Research - Animal study', 'Basic Research - Cell study', 'Basic Research - Genetic study', 'Basic Research - Biochemistry study', 'Basic Research - Biophysical study', 'Basic Research - Gene sequencing', 'Basic Research - Genetic Engineering', 'Basic Research - Material Development', 'Basic Research - Device Development', 'Basic Research - Small molecule screen', 'Basic Research - High throughput screen', 'Basic Research - Screen, other', 'Clinical Research - Phase I', 'Clinical Research - Phase II', 'Clinical Research - Phase III', 'Clinical Research - Phase IV', 'Clinical Research - Therapy/drug study without intervention', 'Clinical Research - Case Report or Series', 'Preclinical Research', 'Randomized Control Trial', 'Pre/Post', 'Stepped Wedge', 'Regression Discontinuity', 'Difference in Differences', 'Cross-over', 'Natural Experiment', 'Cohort, prospective', 'Cohort, retrospective', 'Cohort - panel, longitudinal', 'Cohort - cross-sectional, longitudinal', 'Cohort - cross-sectional, single time-point', 'Case control', 'Ecological', 'Monitoring/surveillance', 'Inventory', 'Curation', 'Meta-analysis', 'Review', 'Review, Systematic', 'Review, Simple (narrative)']`. +- **`human_subject_applicability`** *(object)* + - **`gender_applicability`** *(array)*: Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to. + - **Items** *(string)*: Must be one of: `['Female', 'Transgender woman/trans woman/male-to-female (MTF)', 'Male', 'Transgender man/trans man/female-to-male (FTM)', 'Genderqueer/gender nonconforming/neither exclusively male nor female', 'Other']`. + - **`sexual_identity_applicability`** *(array)*: Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to. + - **Items** *(string)*: Must be one of: `['Heterosexual', 'Homosexual (gay/lesbian)', 'Bisexual', 'Asexual', 'Other']`. + - **`biological_sex_applicability`** *(array)*: Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to. + - **Items** *(string)*: Must be one of: `['Ambiguous', 'Female', 'Male']`. + - **`age_applicability`** *(array)*: Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to. + - **Items** *(string)*: Must be one of: `['Fetus', 'Infant, newborn (Birth to 1 month)', 'Infant (1 to 23 months)', 'Child, preschool (2 to 5 years)', 'Child (6 to 12 years)', 'Adolescent (13 to 18 years)', 'Adult (19 to 44 years)', 'Middle aged adult (45 to 64 years)', 'Aged adult (65 to 79 years)', 'Aged, 80 and over (80 years and over)']`. + - **`irb_vulnerability_conditions_applicability`** *(array)*: Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to? + - **Items** *(string)*: Must be one of: `['Pregnant women', 'Human fetuses', 'Neonates', 'Prisoners', 'Children', 'Individuals with physical disabilities', 'Individuals with mental disabilities or cognitive impairments', 'Economically disadvantaged', 'Socially disadvantaged', 'Terminally ill or very sick', 'Racial or ethnic minorities', 'Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)']`. + - **`geographic_applicability`** *(array)*: For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited. + - **Items** *(string)*: Must be one of: `['Non US', 'US - National', 'US - Specific States', 'US - Specific Counties', 'AK', 'AL', 'AR', 'AZ', 'CA', 'CO', 'CT', 'DE', 'FL', 'GA', 'HI', 'IA', 'ID', 'IL', 'IN', 'KS', 'KY', 'LA', 'MA', 'MD', 'ME', 'MI', 'MN', 'MO', 'MS', 'MT', 'NC', 'ND', 'NE', 'NH', 'NJ', 'NM', 'NV', 'NY', 'OH', 'OK', 'OR', 'PA', 'RI', 'SC', 'SD', 'TN', 'TX', 'UT', 'VA', 'VT', 'WA', 'WI', 'WV', 'WY']`. - **`human_treatment_applicability`** *(object)* - **`treatment_investigation_stage_or_type`** *(array)*: If the study is investigating a treatment, intervention, or solution to a human opioid or pain condition, what type of investigation is the study undertaking? at what stage in the treatment investigation process does this study lie? - **Items** *(string)*: Must be one of: `['target discovery', 'target mechanism', 'treatment discovery', 'treatment mechanism', 'treatment efficacy', 'differential treatment efficacy', 'treatment implementation', 'treatment availability or accessibility']`. @@ -63,19 +76,6 @@ - **Items** *(string)* - **`all_other_condition`** *(array)*: If the study is measuring or tracking other human health conditions besides the treatment or study target condition and outcome condition, please indicate the other tracked/measured condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView. - **Items** *(string)* -- **`human_subject_applicability`** *(object)* - - **`gender_applicability`** *(array)*: Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to. - - **Items** *(string)*: Must be one of: `['Female', 'Female-to-male transsexual', 'Intersexed', 'Male', 'Male-to-female transsexual', 'Other']`. - - **`sexual_identity_applicability`** *(array)*: Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to. - - **Items** *(string)*: Must be one of: `['Heterosexual', 'Homosexual (gay/lesbian)', 'Bisexual', 'Asexual', 'Other']`. - - **`biological_sex_applicability`** *(array)*: Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to. - - **Items** *(string)*: Must be one of: `['Ambiguous', 'Female', 'Male']`. - - **`age_applicability`** *(array)*: Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to. - - **Items** *(string)*: Must be one of: `['Fetus', 'Infant, newborn (Birth to 1 month)', 'Infant (1 to 23 months)', 'Child, preschool (2 to 5 years)', 'Child (6 to 12 years)', 'Adolescent (13 to 18 years)', 'Adult (19 to 44 years)', 'Middle aged adult (45 to 64 years)', 'Aged adult (65 to 79 years)', 'Aged, 80 and over (80 years and over)']`. - - **`irb_vulnerability_conditions_applicability`** *(array)*: Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to? - - **Items** *(string)*: Must be one of: `['Pregnant women', 'Human fetuses', 'Neonates', 'Prisoners', 'Children', 'Individuals with physical disabilities', 'Individuals with mental disabilities or cognitive impairments', 'Economically disadvantaged', 'Socially disadvantaged', 'Terminally ill or very sick', 'Racial or ethnic minorities', 'Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)']`. - - **`geographic_applicability`** *(array)*: For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited. - - **Items** *(string)*: Must be one of: `['Non US', 'US - National', 'US - Specific States', 'US - Specific Counties', 'AK', 'AL', 'AR', 'AZ', 'CA', 'CO', 'CT', 'DE', 'FL', 'GA', 'HI', 'IA', 'ID', 'IL', 'IN', 'KS', 'KY', 'LA', 'MA', 'MD', 'ME', 'MI', 'MN', 'MO', 'MS', 'MT', 'NC', 'ND', 'NE', 'NH', 'NJ', 'NM', 'NV', 'NY', 'OH', 'OK', 'OR', 'PA', 'RI', 'SC', 'SD', 'TN', 'TX', 'UT', 'VA', 'VT', 'WA', 'WI', 'WV', 'WY']`. - **`data`** *(object)* - **`data_orientation`** *(array)*: Does the study produce/collect quantitative data?, qualitative data? Choose as many as apply. - **Items** *(string)*: Must be one of: `['Quantitative', 'Qualitative']`. diff --git a/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema-for-humans_cedar_subset.pdf b/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema-for-humans_cedar_subset.pdf index 6e568f9..eb9483b 100644 Binary files a/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema-for-humans_cedar_subset.pdf and b/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema-for-humans_cedar_subset.pdf differ diff --git a/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema_cedar_subset.json b/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema_cedar_subset.json index 56297ff..28d57b2 100644 --- a/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema_cedar_subset.json +++ b/study-level-metadata-schema/schema-clean/cedar_subset/study-metadata-schema_cedar_subset.json @@ -35,7 +35,7 @@ "alternative_study_name": { "description": "Study nickname, alternative title, abbreviation, or acronym (e.g. many people shorten the name of the HEAL Adolescent Brain Cognitive Development study to ABCD)", "type": "string", - "label": "Study Nickname or Alternative Title" + "label": "Alternative Study Title or Name" }, "alternative_study_description": { "description": "An alternative description of or abstract for the study. - Generally, for studies with an NIH appl id, if this field is filled out, the text will be searchable on the Platform, but the NIH appl id abstract text will be the study description displayed for the study in the Platform study table entry.", @@ -54,9 +54,9 @@ "label": "NIH Application ID" }, "other_study_websites": { - "description": "any other websites officially associated with this study that provide additional information about the study", + "description": "Other websites officially associated with this study that provide additional information about the study", "type": "array", - "label": "Other Study Websites", + "label": "Other Study-Associated Websites", "items": { "type": "string", "$ref": "#/definitions/saneUrl" @@ -123,7 +123,8 @@ }, "produce_other": { "description": "Indicate whether or not the study will produce shareable products other than data", - "type": "boolean" + "type": "boolean", + "label":"Will study produce shareable products other than data?" } } }, @@ -266,6 +267,125 @@ } } }, + "human_subject_applicability": { + "type": "object", + "required": [], + "properties": { + "gender_applicability": { + "description": "Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to.", + "type": "array", + "label": "Do the results of your study have special applicability for humans of specific gender identity(s)? If so, mark all gender identity(s) for which the results of your study have special applicability.", + "items": { + "type": "string", + "enum": [ + "Female", + "Transgender woman/trans woman/male-to-female (MTF)", + "Male", + "Transgender man/trans man/female-to-male (FTM)", + "Genderqueer/gender nonconforming/neither exclusively male nor female", + "Other" + ] + } + }, + "sexual_identity_applicability": { + "description": "Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to.", + "type": "array", + "label": "Do the results of your study have special applicability for humans of specific sexual identity(s)? If so, mark all sexual identity(s) for which the results of your study have special applicability.", + "items": { + "type": "string", + "enum": [ + "Heterosexual", + "Homosexual (gay/lesbian)", + "Bisexual", + "Asexual", + "Other" + ] + } + }, + "biological_sex_applicability": { + "description": "Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to.", + "type": "array", + "label": "Do the results of your study have special applicability for humans of specific biological sex(s)? If so, mark all biological sex(s) for which the results of your study have special applicability.", + "items": { + "type": "string", + "enum": [ + "Ambiguous", + "Female", + "Male" + ] + } + }, + "age_applicability": { + "description": "Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to", + "type": "array", + "label": "Do the results of your study have special applicability for humans of specific age/developmental stage(s)? If so, mark all age/developmental stage(s) for which the results of your study have special applicability.", + "items": { + "type": "string", + "enum": [ + "Fetus", + "Infant, newborn (Birth to 1 month)", + "Infant (1 to 23 months)", + "Child, preschool (2 to 5 years)", + "Child (6 to 12 years)", + "Adolescent (13 to 18 years)", + "Adult (19 to 44 years)", + "Middle aged adult (45 to 64 years)", + "Aged adult (65 to 79 years)", + "Aged, 80 and over (80 years and over)" + ] + } + }, + "irb_vulnerability_conditions_applicability": { + "description": "Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to?", + "type": "array", + "label": "Do the results of your study have special applicability for humans of specific vulnerability condition(s)? If so, mark all special vulnerability condition(s) for which the results of your study have special applicability.", + "items": { + "type": "string", + "enum": [ + "Pregnant women", + "Human fetuses", + "Neonates", + "Prisoners", + "Children", + "Individuals with physical disabilities", + "Individuals with mental disabilities or cognitive impairments", + "Economically disadvantaged", + "Socially disadvantaged", + "Terminally ill or very sick", + "Racial or ethnic minorities", + "Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)" + ] + } + }, + "geographic_applicability": { + "description": "For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited", + "type": "array", + "label": "Human Subject Studies: Where do human subjects of the study reside or obtain care during the course of the study - To humans in which geographical locations do the study results apply?", + "items": { + "type": "string", + "enum": [ + "Non US", + "US - National", + "US - Specific States", + "US - Specific Counties", + "AK","AL","AR","AZ", + "CA","CO","CT","DE", + "FL","GA","HI","IA", + "ID","IL","IN","KS", + "KY","LA","MA","MD", + "ME","MI","MN","MO", + "MS","MT","NC","ND", + "NE","NH","NJ","NM", + "NV","NY","OH","OK", + "OR","PA","RI","SC", + "SD","TN","TX","UT", + "VA","VT","WA","WI", + "WV","WY" + ] + } + } + } + }, "human_treatment_applicability": { "type": "object", "required": [], @@ -291,7 +411,7 @@ "treatment_mode": { "description": "Is the treatment, intervention, or solution that my study is relevant to meant to prevent the occurrance of a condition (e.g. development of a non-opioid drug for pain to prevent opioid exposure and addiction, case management and MAT for pregnant women to prevent in utero exposure to opioids, safe needle exchange center to prevent spread of blood borne diseases among people using heroin), treat an occurrance of a condition (e.g. naloxone to treat opioid overdose, physical therapy to treat existing pain from a back injury) , and/or is it a harm reduction mechanism (e.g. safe needle exchange reduces harm associated with heroin addiction/use, decriminalization of heroin possession or use reduces the harm associated with heroin addiction/use)", "type": "array", - "label": "Treatment Mode - Preventive, Therapeutic, Harm Reduction", + "label": "Treatment Mode", "items": { "type": "string", "enum": [ @@ -461,125 +581,6 @@ } }, - "human_subject_applicability": { - "type": "object", - "required": [], - "properties": { - "gender_applicability": { - "description": "Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to", - "type": "array", - "label": "To humans of which gender identity(ies) do study results apply?", - "items": { - "type": "string", - "enum": [ - "Female", - "Female-to-male transsexual", - "Intersexed", - "Male", - "Male-to-female transsexual", - "Other" - ] - } - }, - "sexual_identity_applicability": { - "description": "Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to", - "type": "array", - "label": "To humans of which sexual identity(ies) do study results apply?", - "items": { - "type": "string", - "enum": [ - "Heterosexual", - "Homosexual (gay/lesbian)", - "Bisexual", - "Asexual", - "Other" - ] - } - }, - "biological_sex_applicability": { - "description": "Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to", - "type": "array", - "label": "To humans of which biological sexes do study results apply?", - "items": { - "type": "string", - "enum": [ - "Ambiguous", - "Female", - "Male" - ] - } - }, - "age_applicability": { - "description": "Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to", - "type": "array", - "label": "To humans of which age/developmental stage do study results apply?", - "items": { - "type": "string", - "enum": [ - "Fetus", - "Infant, newborn (Birth to 1 month)", - "Infant (1 to 23 months)", - "Child, preschool (2 to 5 years)", - "Child (6 to 12 years)", - "Adolescent (13 to 18 years)", - "Adult (19 to 44 years)", - "Middle aged adult (45 to 64 years)", - "Aged adult (65 to 79 years)", - "Aged, 80 and over (80 years and over)" - ] - } - }, - "irb_vulnerability_conditions_applicability": { - "description": "Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to?", - "type": "array", - "label": "To humans in which special vulnerability categories do study results apply?", - "items": { - "type": "string", - "enum": [ - "Pregnant women", - "Human fetuses", - "Neonates", - "Prisoners", - "Children", - "Individuals with physical disabilities", - "Individuals with mental disabilities or cognitive impairments", - "Economically disadvantaged", - "Socially disadvantaged", - "Terminally ill or very sick", - "Racial or ethnic minorities", - "Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)" - ] - } - }, - "geographic_applicability": { - "description": "For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited", - "type": "array", - "label": "To humans of which age/developmental stage do study results apply?", - "items": { - "type": "string", - "enum": [ - "Non US", - "US - National", - "US - Specific States", - "US - Specific Counties", - "AK","AL","AR","AZ", - "CA","CO","CT","DE", - "FL","GA","HI","IA", - "ID","IL","IN","KS", - "KY","LA","MA","MD", - "ME","MI","MN","MO", - "MS","MT","NC","ND", - "NE","NH","NJ","NM", - "NV","NY","OH","OK", - "OR","PA","RI","SC", - "SD","TN","TX","UT", - "VA","VT","WA","WI", - "WV","WY" - ] - } - } - } - }, "data": { "type": "object", "required": [], @@ -615,7 +616,7 @@ "data_type": { "description": "What is the type of the data the study will produce/collect. Choose as many as apply", "type": "array", - "label": "Type of Data", + "label": "Data Type", "items": { "type": "string", "enum": [ @@ -678,7 +679,7 @@ "Individual - Unaggregated", "Individual - Aggregated", "Community, Group, Cluster, Population - Unaggregated", - "Community, Group, Cluster, Population - Aggregated", + "Community, Group, Cluster, Population - Aggregated", "Unaggregated", "Aggregated", "Aggregated, across all (population summary statistics)", diff --git a/study-level-metadata-schema/schema-clean/html/schema_doc.css b/study-level-metadata-schema/schema-clean/html/schema_doc.css index 83897d8..e1f3a51 100644 --- a/study-level-metadata-schema/schema-clean/html/schema_doc.css +++ b/study-level-metadata-schema/schema-clean/html/schema_doc.css @@ -7,6 +7,7 @@ body { .btn.btn-link { font-size: 18px; + user-select: text; } .jsfh-animated-property { @@ -177,4 +178,4 @@ body { .highlight .vg { color: #bb60d5 } /* Name.Variable.Global */ .highlight .vi { color: #bb60d5 } /* Name.Variable.Instance */ .highlight .vm { color: #bb60d5 } /* Name.Variable.Magic */ -.highlight .il { color: #40a070 } /* Literal.Number.Integer.Long */ \ No newline at end of file +.highlight .il { color: #40a070 } /* Literal.Number.Integer.Long */ diff --git a/study-level-metadata-schema/schema-clean/html/schema_doc.min.js b/study-level-metadata-schema/schema-clean/html/schema_doc.min.js index 0d9c788..17eceaf 100644 --- a/study-level-metadata-schema/schema-clean/html/schema_doc.min.js +++ b/study-level-metadata-schema/schema-clean/html/schema_doc.min.js @@ -1 +1 @@ -function flashElement(t){myElement=document.getElementById(t),myElement.classList.add("jsfh-animated-property"),setTimeout(function(){myElement.classList.remove("jsfh-animated-property")},1e3)}function setAnchor(t){history.pushState({},"",t)}function anchorOnLoad(){let t=window.location.hash.split("?")[0].split("&")[0];"#"===t[0]&&(t=t.substr(1)),t.length>0&&anchorLink(t)}function anchorLink(t){$("#"+t).parents().addBack().filter(".collapse:not(.show), .tab-pane, [role='tab']").each(function(t){if($(this).hasClass("collapse"))$(this).collapse("show");else if($(this).hasClass("tab-pane")){const t=$("a[href='#"+$(this).attr("id")+"']");t&&t.tab("show")}else"tab"===$(this).attr("role")&&$(this).tab("show")}),setTimeout(function(){let e=document.getElementById(t);e&&(e.scrollIntoView({block:"center",behavior:"smooth"}),setTimeout(function(){flashElement(t)},500))},1e3)}$(document).on("click",'a[href^="#"]',function(t){t.preventDefault(),history.pushState({},"",this.href)}); \ No newline at end of file +$(document).on("click",'a[href^="#"]',function(event){event.preventDefault();history.pushState({},"",this.href)});function flashElement(elementId){myElement=document.getElementById(elementId);myElement.classList.add("jsfh-animated-property");setTimeout(function(){myElement.classList.remove("jsfh-animated-property")},1e3)}function setAnchor(anchorLinkDestination){history.pushState({},"",anchorLinkDestination)}function anchorOnLoad(){let linkTarget=decodeURIComponent(window.location.hash.split("?")[0].split("&")[0]);if(linkTarget[0]==="#"){linkTarget=linkTarget.substr(1)}if(linkTarget.length>0){anchorLink(linkTarget)}}function anchorLink(linkTarget){const target=$("#"+linkTarget);target.parents().addBack().filter(".collapse:not(.show), .tab-pane, [role='tab']").each(function(index){if($(this).hasClass("collapse")){$(this).collapse("show")}else if($(this).hasClass("tab-pane")){const tabToShow=$("a[href='#"+$(this).attr("id")+"']");if(tabToShow){tabToShow.tab("show")}}else if($(this).attr("role")==="tab"){$(this).tab("show")}});setTimeout(function(){let targetElement=document.getElementById(linkTarget);if(targetElement){targetElement.scrollIntoView({block:"center",behavior:"smooth"});setTimeout(function(){flashElement(linkTarget)},500)}},1e3)} \ No newline at end of file diff --git a/study-level-metadata-schema/schema-clean/html/study-metadata-schema-for-humans.html b/study-level-metadata-schema/schema-clean/html/study-metadata-schema-for-humans.html index ddf1eeb..ca7dd81 100644 --- a/study-level-metadata-schema/schema-clean/html/study-metadata-schema-for-humans.html +++ b/study-level-metadata-schema/schema-clean/html/study-metadata-schema-for-humans.html @@ -1 +1 @@ - HEAL Platform Study

HEAL Platform Study

Type: object

A study hosted and indexed on the HEAL Platform. Note that if the study has more than one aim, a single form should be completed and the multi-select answer options should be used to provide information about each of the aims.

Type: object

Type: string

The title or name of the study. For NIH-funded studies, this will generally be equivalent to the NIH application ID title

Type: string

A description of or abstract for the study. For NIH-funded studies , this will generally be equivalent to the NIH application ID abstract text

Type: string

Study nickname, alternative title, abbreviation, or acronym (e.g. many people shorten the name of the HEAL Adolescent Brain Cognitive Development study to ABCD)

Type: string

An alternative description of or abstract for the study. - Generally, for studies with an NIH appl id, if this field is filled out, the text will be searchable on the Platform, but the NIH appl id abstract text will be the study description displayed for the study in the Platform study table entry.

Type: object

Type: string

NIH application ID; only applicable if study is funded by NIH

Type: string

ClinicalTrials.gov study ID; only applicable if study is a reportable clinical trial and registered on ClinicalTrials.gov

Type: array of object

Describe the data repositories to which data or other shareable products produced by the study will be submitted by the study authors and stored for long-term access; one item in this array per repository

Each item of this array must be:

Type: object

The following properties are required:

  • repository_name, repository_study_ID

Type: string

Name of a repository in which data or other shareable research products are submitted for storage by study author

Type: string

Unique identifier assigned to the study at that repository; usually a number or combination of standard letters and numbers (e.g. study identifiers on ClinicalTrials.gov are generally in the format: NCT12345678)

Type: string

Unique persistent identifier assigned to the study at that repository; usually a doi

Type: string

The official citation the repository requests be used to cite the study/data when the study/data is discovered/accessed via the repository; will likely follow the format: Principal Investigator(s). Title. Place-of-Distribution and Distributor, Date-of-Distribution. DOI. version (where distributor will be the repository name)

Type: string

ID of the CEDAR HEAL Study-level Core Metadata Template instance created for this study

Type: array of string

any other websites officially associated with this study that provide additional information about the study

Each item of this array must be:

Type: object

Type: boolean

Whether or not the study is funded by the NIH HEAL initiative

Type: boolean

Whether or not the study is related to a study group or collection(s) by some administrative mechanism, or belongs to a group or collection of studies (e.g. SAMHSA performs a survey called the National Survey of Substance Abuse Treatment Services (N-SSATS) every year; each annual survey may be registered as a separate study that belongs to a collection called the N-SSATS collection)

Type: array of string

If this study belongs to a study group or collection(s), this is the name or identifier of the study group or collection(s) (e.g. SAMHSA performs a survey called the National Survey of Substance Abuse Treatment Services (N-SSATS) every year; each annual survey may be registered as a separate study that belongs to a collection called the N-SSATS collection)

Each item of this array must be:

Type: array of object

Describe the grants and other funding supporting the study; one item in this array per grant/award or funding source

Each item of this array must be:

Type: object

Type: array of string

Name of a the granting agency or organization funding the study; include sub-agency administrative entity as second element in array if applicable (e.g. National Institute of Health, National Institute on Drug Abuse)

Each item of this array must be:

Type: array of string

Abbreviation for the name of the granting agency or organization funding the study; include abbreviation for sub-agency administrative entity as second element in array if applicable (e.g. NIH, NIDA)

Each item of this array must be:

Type: enum (of string)

Type of granting agency or organization funding the study

Must be one of:

  • "governmental"
  • "non-governmental, non-profit, not corporate affiliated"
  • "non-governmental, non-profit, corporate affiliated"
  • "non-governmental, for-profit"

Type: enum (of string)

The geographic reach of the granting agency or organization funding the study

Must be one of:

  • "international"
  • "national - non-US"
  • "national - US"
  • "state - US"
  • "local - US"

Type: string

The grant award ID or number. For NIH-funded studies this will be the project or award number and is distinct from the NIH application ID

Type: string

The grant award name. For NIH-funded studies this will be the project or award name and is distinct from the name or title associated with the NIH application ID

Type: array of object

Describe the primary and co-investigators of the study; one item in this array per investigator

Each item of this array must be:

Type: object

Type: string

First name of study primary or co-investigator

Type: string

Middle initial of study primary or co-investigator

Type: string

Last name of study primary or co-investigator

Type: string

Institutional affiliation of study primary or co-investigator

Type: array of object

Add a structured identifier(s) for the investigator; one item in this array per structured identifier; e.g. one item for providing ORCID, another for providing RAS passport

Each item of this array must be:

Type: object

Type: enum (of string)

Type of identifier that will be provided

Must be one of:

  • "internal NIH RePORTER ID"
  • "doi"
  • "ORCID"
  • "eRA Commons ID"
  • "RAS Passport"

Type: string

Value of the identifier of the type specified by ID_type

Type: string

Persistent identifier assigned to the study on the HEAL Platform; probably a HEAL Platform-branded doi

Type: string

The official citation the HEAL Platform will request be used to cite the study/data when the study/data is discovered/accessed via the Platform; will likely follow the format: Principal Investigator(s). Title. Place-of-Distribution and Distributor, Date-of-Distribution. DOI. version (where distributor will be: Platform via [Repository Name])

Type: object

Type: array of object

Describe the contact person(s) for the study. This is the person(s) who should be contacted for questions about the study; will be auto-set as NIH contact PI(s) if NIH-funded; one item in this array per contact person

Each item of this array must be:

Type: object

Type: string

First name of study contact

Type: string

Middle initial of study contact

Type: string

Last name of study contact

Type: string

Institutional affiliation of study contact

Type: string

Institutional email of study contact

Type: array of object

Describe the person(s) who will register the study on the HEAL Platform. This person(s) must be authorized to access the study registration page/process on the HEAL Platform; will be auto-set as NIH contact PI(s) if NIH-funded; one item in this array per registrant

Each item of this array must be:

Type: object

Type: string

First name of study registrant

Type: string

Middle initial of study registrant

Type: string

Last name of study registrant

Type: string

Institutional affiliation of study registrant

Type: string

Institutional email of study registrant

Type: object

Type: boolean

Indicate whether or not the study will collect/produce (primary or secondary) data

Type: enum (of string)

If study will collect/produce data, indicate whether all, some, or none of the data will be made available

Must be one of:

  • "all"
  • "some"
  • "none"

Type: enum (of string)

If study will collect/produce data, and make at least some of that data available, indicate whether all, some, or none of the data will have restriction(s) on access beyond acknowledgement and signing of a minimal DSA

Must be one of:

  • "all"
  • "some"
  • "none"

Type: enum (of string)

If study will collect/produce data, indicate whether the study has not started, has started, or has finished data collection/production activities

Must be one of:

  • "not started"
  • "started"
  • "finished"

Type: enum (of string)

If the study will collect/produce data and make at least some of the data available, indicate whether the study has not started, has started, or has finished data release activities

Must be one of:

  • "not started"
  • "started"
  • "finished"

Type: string

If the study will collect/produce data, indicate the anticipated date when data collection/production will begin

Type: string

If the study will collect/produce data, indicate the anticipated date when data collection/production will end (data collection/production is complete)

Type: string

If study will collect/produce data and make at least some of the data available, indicate the anticipated date when first data will be released

Type: string

If study will produce data and make at least some of the data available, indicate the anticipated date when last data will be released (data release is complete)

Type: boolean

Indicate whether or not the study will produce shareable products other than data

Type: object

Type: array of string

List of the doi for any/all primary study publications that use the study data; include any papers, books, articles, blog posts, etc. authored by the investigators or team responsible for the study; one item in this array per publication/doi

Each item of this array must be:

Type: array of string

Simple, one-sentence take-away conclusion(s) from study author publications; one item in this array per single-sentence conclusion (e.g. item #1: Provision of MAT rx to men with documented OUD leaving jail reduces overdose risk by 9%; item #2: Provision of MAT rx plus case management support to men with documented OUD leaving jail reduces overdose risk by 30%; item 3: Provision of MAT rx plus case management support to men with documented OUD leaving jail is more effective than provision of MAT rx alone at reducing risk of OUD overdose)

Each item of this array must be:

Type: array of string

List of the doi for any/all secondary study publications that use the study data; include any papers, books, articles, blog posts, etc. authored by persons OTHER THAN the investigators or team responsible for the study; one item in this array per publication/doi

Each item of this array must be:

Type: object

Type: enum (of string)

Whether the study is primarily focused on learning more about a human opioid or pain CONDITION or on discovering, or learning more about a TREATMENT OF A CONDITION, intervention, or solution for a human opioid or pain condition. This may be quite simple to infer for human subject studies. For studies not involving human subjects, please consider how/where the study will most substantially contribute to the HEAL Initiative translational purpose of learning more about human opioid and pain conditions and driving development of solutions to these conditions. Note there are some studies that are not related to a specific condition or the treatment of a condition. An example of a study like this is the National Institute on Drug Abuse (NIDA) study Incarceration Effects on Medicaid Status. If a study like this does not apply to a condition or treatment, this question can be left blank.Choose one.

Must be one of:

  • "Condition"
  • "Treatment of a Condition"

Type: array of enum (of string)

What types of determinants and/or mechanisms related to human opioid use or pain conditions is the study investigating and/or measuring (e.g. A study investigating differential pain/nociception signaling in persons living in neighborhoods with high versus low social cohesion might choose both 'Biology and Health' and 'Social Determinants'). Choose as many as apply.

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Biology and Health"
  • "Mental Health"
  • "Social Determinants"
  • "Public Attitudes or Stigma"

Type: object

Type: array of enum (of string)

The high-level category or type/stage of research being conducted

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Pre-Research/Protocol Development"
  • "Basic Research"
  • "Pre-Clinical Research"
  • "Clinical Research"
  • "Implementation Research"
  • "Post-market Research"
  • "Business Development"
  • "Epidemiologic Research"

Type: enum (of string)

Is the study collecting data itself to analyze and draw conclusions or is it leveraging data collected by other entities to analyze and draw conclusions

Must be one of:

  • "Primary Research"
  • "Secondary Research"

Type: enum (of string)

Whether the study is observational (no explicit intervention) or experimental (some explicit intervention)

Must be one of:

  • "Observational Research"
  • "Experimental Research"

Type: array of enum (of string)

What is the actual species or entity that is experimentally or observationally studied in the research; each HEAL study will have translational relevance to humans, but not all HEAL studies directly study humans

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Human"
  • "Animal"
  • "Human cell/tissue/tissue model"
  • "Animal cell/tissue/tissue model"
  • "Molecule (e.g. chemical/protein engineering, protein crystallization)"

Type: array of enum (of string)

The overarching study type and more granular study design. Choose as many as apply

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Basic Research - Theory/Modeling"
  • "Basic Research - Applied"
  • "Basic Research - Method/Protocol development"
  • "Basic Research - Animal study"
  • "Basic Research - Cell study"
  • "Basic Research - Genetic study"
  • "Basic Research - Biochemistry study"
  • "Basic Research - Biophysical study"
  • "Basic Research - Gene sequencing"
  • "Basic Research - Genetic Engineering"
  • "Basic Research - Material Development"
  • "Basic Research - Device Development"
  • "Basic Research - Small molecule screen"
  • "Basic Research - High throughput screen"
  • "Basic Research - Screen, other"
  • "Clinical Research - Phase I"
  • "Clinical Research - Phase II"
  • "Clinical Research - Phase III"
  • "Clinical Research - Phase IV"
  • "Clinical Research - Therapy/drug study without intervention"
  • "Clinical Research - Case Report or Series"
  • "Preclinical Research"
  • "Randomized Control Trial"
  • "Pre/Post"
  • "Stepped Wedge"
  • "Regression Discontinuity"
  • "Difference in Differences"
  • "Cross-over"
  • "Natural Experiment"
  • "Cohort, prospective"
  • "Cohort, retrospective"
  • "Cohort - panel, longitudinal"
  • "Cohort - cross-sectional, longitudinal"
  • "Cohort - cross-sectional, single time-point"
  • "Case control"
  • "Ecological"
  • "Monitoring/surveillance"
  • "Inventory"
  • "Curation"
  • "Meta-analysis"
  • "Review"
  • "Review, Systematic"
  • "Review, Simple (narrative)"

Type: object

Type: array of enum (of string)

If the study is investigating a treatment, intervention, or solution to a human opioid or pain condition, what type of investigation is the study undertaking? at what stage in the treatment investigation process does this study lie?

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "target discovery"
  • "target mechanism"
  • "treatment discovery"
  • "treatment mechanism"
  • "treatment efficacy"
  • "differential treatment efficacy"
  • "treatment implementation"
  • "treatment availability or accessibility"

Type: array of enum (of string)

Is the treatment, intervention, or solution that my study is relevant to meant to prevent the occurrance of a condition (e.g. development of a non-opioid drug for pain to prevent opioid exposure and addiction, case management and MAT for pregnant women to prevent in utero exposure to opioids, safe needle exchange center to prevent spread of blood borne diseases among people using heroin), treat an occurrance of a condition (e.g. naloxone to treat opioid overdose, physical therapy to treat existing pain from a back injury) , and/or is it a harm reduction mechanism (e.g. safe needle exchange reduces harm associated with heroin addiction/use, decriminalization of heroin possession or use reduces the harm associated with heroin addiction/use)

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Preventive (prevention of an occurrence)"
  • "Therapeutic (treating an occurrence)"
  • "Harm Reduction (preventing more of an occurrence, or preventing harm from an occurrence)"

Type: array of enum (of string)

Is the treatment, intervention, or solution that my study is relevant to totally novel, is it totally established, does it have some element of novelty added to an established intervention (novel added to established, established used in a novel population, setting, or combination)?

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Novel"
  • "Novel, added to established"
  • "Established"
  • "Established, used in novel population, setting, or combination"

Type: array of enum (of string)

Is the treatment, intervention, or solution that my study is relevant to applied at the individual level (e.g. a doctor prescribes a drug or physical therapy regimen to a patient) or at the population/community/group level (e.g. a city changes good samaritan naloxone laws, or implements a safe needle exchange center, or adds park maintenance resources to the budget to provide more access to outside places to exercise)?

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Individual"
  • "Population"

Type: array of enum (of string)

Classify the treatment, intervention, or solution the study is relevant to by broad type of intervention. Choose as many as apply

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "drug"
  • "non-opioid drug"
  • "opioid drug"
  • "non-biologic drug"
  • "biologic drug"
  • "non-drug"
  • "device"
  • "behavioral"
  • "psychotherapy"
  • "group therapy"
  • "physical therapy"
  • "exercise"
  • "education"
  • "community resources/supports"
  • "economic supports"
  • "housing supports"
  • "case management"
  • "environmental (indoors)"
  • "environmental (outdoors)"
  • "law/policy"
  • "surgical procedure"
  • "nutritional"
  • "nutritional supplement"
  • "gene therapy"
  • "immunotherapy"
  • "electrotherapy"

Type: object

Type: array of enum (of string)

Considering the study in a translational context, to humans with which broad category(ies) of opioid use or pain conditions are the study results intended to apply. Choose as many as apply

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Opioid use and opioid use disorder"
  • "Opioid use and opioid use disorder, primary occurrence"
  • "Opioid use and opioid use disorder, relapse"
  • "Opioid use and opioid use disorder, chronic"
  • "Opioid overdose"
  • "Opioid exposure"
  • "(Non-opioid) Substance use"
  • "Co-occurring (Opioid or Non-opioid) Substance use and Mental Health disorder"
  • "Pain"
  • "Pain, acute"
  • "Pain, chronic"
  • "Pain, acute to chronic transition"
  • "Pain, resulting from injury"
  • "Pain, resulting from surgery"
  • "Pain, resulting from chronic illness"
  • "Pain, idiopathic (unknown origin)"

Type: array of enum (of string)

Each HEAL study will be doing work that is relevant to a human opioid and/or pain condition. What does this study intend to learn about the condition? If the study is investigating a treatment, intervention, or solution, please choose 'Treatment of Condition'. Choose as many as apply

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Incidence of condition"
  • "Risk for condition"
  • "Differential risk for condition"
  • "Mechanism of condition"
  • "Impact of condition"
  • "Public attitudes towards or perception of condition"
  • "Treatment of condition"

Type: array of string

If the study will be doing work that is relevant to a human PAIN condition category, is the study focusing on pain caused by a specific condition? e.g. Cancer, fibromyalgia, arthritis, occupational injury, sports injury, car accident, surgical procedure. If yes, please indicate the causal condition(s) here - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView

Each item of this array must be:

Type: array of enum (of string)

If the study will be doing work that is relevant to a human PAIN condition category, and the pain condition has a causal condition (specified above), is the study focusing its investigation on the causal condition, or on the pain resulting from the causal condition? e.g. In a study of effective treatments for fibromyalgia/fibromyalgia pain, is the study focused on fibromyalgia disease-modifying treatments, or on treatments that address the symptomology of pain? Choose as many as apply

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Causal Condition"
  • "Pain"
  • "Pain, acute"
  • "Pain, chronic"

Type: array of string

Considering the study in a translational context, to humans with which detailed type of opioid use or pain conditions are the study results intended to apply? Each HEAL study will be doing work that is relevant to a human opioid and/or pain condition; You indicated the broad category of condition(s) the study is focusing on or relevant to above. Here, please indicate the study focus condition(s) in detail. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView

Each item of this array must be:

Type: array of string

If the outcome condition(s) the study hopes to impact or measure is different than the treatment or study target condition (e.g. testing a disease-modifying fibromyaligia treatment but measuring depression, physical and social function, and neurologic pain such as headaches as the main outcomes). Please indicate the study outcome condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView

Each item of this array must be:

Type: array of string

If the study is measuring or tracking other human health conditions besides the treatment or study target condition and outcome condition, please indicate the other tracked/measured condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView

Each item of this array must be:

Type: object

Type: array of enum (of string)

Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to.

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Female"
  • "Female-to-male transsexual"
  • "Intersexed"
  • "Male"
  • "Male-to-female transsexual"
  • "Other"

Type: array of enum (of string)

Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to.

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Heterosexual"
  • "Homosexual (gay/lesbian)"
  • "Bisexual"
  • "Asexual"
  • "Other"

Type: array of enum (of string)

Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to.

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Ambiguous"
  • "Female"
  • "Male"

Type: array of enum (of string)

Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Fetus"
  • "Infant, newborn (Birth to 1 month)"
  • "Infant (1 to 23 months)"
  • "Child, preschool (2 to 5 years)"
  • "Child (6 to 12 years)"
  • "Adolescent (13 to 18 years)"
  • "Adult (19 to 44 years)"
  • "Middle aged adult (45 to 64 years)"
  • "Aged adult (65 to 79 years)"
  • "Aged, 80 and over (80 years and over)"

Type: array of enum (of string)

Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to?

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Pregnant women"
  • "Human fetuses"
  • "Neonates"
  • "Prisoners"
  • "Children"
  • "Individuals with physical disabilities"
  • "Individuals with mental disabilities or cognitive impairments"
  • "Economically disadvantaged"
  • "Socially disadvantaged"
  • "Terminally ill or very sick"
  • "Racial or ethnic minorities"
  • "Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)"

Type: array of enum (of string)

For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Non US"
  • "US - National"
  • "US - Specific States"
  • "US - Specific Counties"
  • "AK"
  • "AL"
  • "AR"
  • "AZ"
  • "CA"
  • "CO"
  • "CT"
  • "DE"
  • "FL"
  • "GA"
  • "HI"
  • "IA"
  • "ID"
  • "IL"
  • "IN"
  • "KS"
  • "KY"
  • "LA"
  • "MA"
  • "MD"
  • "ME"
  • "MI"
  • "MN"
  • "MO"
  • "MS"
  • "MT"
  • "NC"
  • "ND"
  • "NE"
  • "NH"
  • "NJ"
  • "NM"
  • "NV"
  • "NY"
  • "OH"
  • "OK"
  • "OR"
  • "PA"
  • "RI"
  • "SC"
  • "SD"
  • "TN"
  • "TX"
  • "UT"
  • "VA"
  • "VT"
  • "WA"
  • "WI"
  • "WV"
  • "WY"

Type: object

Type: array of enum (of string)

Does the study produce/collect quantitative data?, qualitative data? Choose as many as apply

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Quantitative"
  • "Qualitative"

Type: array of enum (of string)

What is the source of the data the study will produce/collect. Choose as many as apply

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Administrative"
  • "Government Collected/Measured"
  • "Clinical/EHR"
  • "Laboratory"
  • "Researcher Collected/Measured"
  • "Patient-Reported"

Type: array of enum (of string)

What is the type of the data the study will produce/collect. Choose as many as apply

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Genomic"
  • "Proteomic"
  • "Biochemical"
  • "Biophysical"
  • "Imaging"
  • "Interview/Focus Group"
  • "Interview/Focus Group - structured"
  • "Interview/Focus Group - semi-structured"
  • "Interview/Focus Group - unstructured"
  • "Questionnaire/Survey/Assessment"
  • "Questionnaire/Survey/Assessment - validated instrument"
  • "Questionnaire/Survey/Assessment - unvalidated instrument"

Type: array of enum (of string)

For studies with human subjects, is the data collected at the individual or population level?

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Individual"
  • "Community, Group, Cluster, Population"

Type: integer

For studies with human subjects, what is the expected number of subjects for which data will be collected? If unit of data collection is individuals this is the expected number of individuals, and if the unit of data collection is populations/clusters this is the expected number of populations/clusters

Type: array of enum (of string)

For studies with human subjects, is the data analyzed at the individual or population level?

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Individual"
  • "Community, Group, Cluster, Population"

Type: integer

For studies with human subjects, what is the expected number of subjects at the level at which data will be analyzed? If unit of data analysis is individuals this is the expected number of individuals, and if the unit of data analysis is populations/clusters this is the expected number of populations/clusters

Type: array of enum (of string)

For studies with human subjects that will make at least some data available, will data be made available at the individual subject level or some level of aggregation?

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Individual - Unaggregated"
  • "Individual - Aggregated"
  • "Community, Group, Cluster, Population - Unaggregated"
  • "Community, Group, Cluster, Population - Aggregated"
  • "Unaggregated"
  • "Aggregated"
  • "Aggregated, across all (population summary statistics)"
  • "Aggregated, by treatment/exposure group"
  • "Aggregated, by demographic variable(s)"
  • "Aggregated, by geographic variable(s)"

Type: array of enum (of string)

For studies with human subjects, will geographic data be collected? if so, what level of geographic detail will be collected?

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Exact location"
  • "Census block"
  • "Census tract"
  • "Zip code"
  • "County"
  • "Sub-state region"
  • "State"
  • "Multi-state region"
  • "Nation"
  • "No geographic data will be collected"

Type: array of enum (of string)

For studies with human subjects that collect geographic data and will make at least some data available, will geographic data be made available? if so, what level of geographic detail will be made available?

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Exact location"
  • "Census block"
  • "Census tract"
  • "Zip code"
  • "County"
  • "Sub-state region"
  • "State"
  • "Multi-state region"
  • "Nation"
  • "No geographic data will be made available"
\ No newline at end of file + HEAL Platform Study

HEAL Platform Study

Type: object

A study hosted and indexed on the HEAL Platform. Note that if the study has more than one aim, a single form should be completed and the multi-select answer options should be used to provide information about each of the aims.

Type: object

Type: string

The title or name of the study. For NIH-funded studies, this will generally be equivalent to the NIH application ID title

Type: string

A description of or abstract for the study. For NIH-funded studies , this will generally be equivalent to the NIH application ID abstract text

Type: string

Study nickname, alternative title, abbreviation, or acronym (e.g. many people shorten the name of the HEAL Adolescent Brain Cognitive Development study to ABCD)

Type: string

An alternative description of or abstract for the study. - Generally, for studies with an NIH appl id, if this field is filled out, the text will be searchable on the Platform, but the NIH appl id abstract text will be the study description displayed for the study in the Platform study table entry.

Type: object

Type: string

NIH application ID; only applicable if study is funded by NIH

Type: string

ClinicalTrials.gov study ID; only applicable if study is a reportable clinical trial and registered on ClinicalTrials.gov

Type: array of object

Describe the data repositories to which data or other shareable products produced by the study will be submitted by the study authors and stored for long-term access; one item in this array per repository

No Additional Items

Each item of this array must be:

Type: object

Type: string

Name of a repository in which data or other shareable research products are submitted for storage by study author

Type: string

Unique identifier assigned to the study at that repository; usually a number or combination of standard letters and numbers (e.g. study identifiers on ClinicalTrials.gov are generally in the format: NCT12345678)

Type: string

Unique persistent identifier assigned to the study at that repository; usually a doi

Type: string

The official citation the repository requests be used to cite the study/data when the study/data is discovered/accessed via the repository; will likely follow the format: Principal Investigator(s). Title. Place-of-Distribution and Distributor, Date-of-Distribution. DOI. version (where distributor will be the repository name)

Type: string

ID of the CEDAR HEAL Study-level Core Metadata Template instance created for this study

Type: array of string

Other websites officially associated with this study that provide additional information about the study

No Additional Items

Each item of this array must be:

Type: object

Type: boolean

Whether or not the study is funded by the NIH HEAL initiative

Type: boolean

Whether or not the study is related to a study group or collection(s) by some administrative mechanism, or belongs to a group or collection of studies (e.g. SAMHSA performs a survey called the National Survey of Substance Abuse Treatment Services (N-SSATS) every year; each annual survey may be registered as a separate study that belongs to a collection called the N-SSATS collection)

Type: array of string

If this study belongs to a study group or collection(s), this is the name or identifier of the study group or collection(s) (e.g. SAMHSA performs a survey called the National Survey of Substance Abuse Treatment Services (N-SSATS) every year; each annual survey may be registered as a separate study that belongs to a collection called the N-SSATS collection)

No Additional Items

Each item of this array must be:

Type: array of object

Describe the grants and other funding supporting the study; one item in this array per grant/award or funding source

No Additional Items

Each item of this array must be:

Type: object

Type: array of string

Name of a the granting agency or organization funding the study; include sub-agency administrative entity as second element in array if applicable (e.g. National Institute of Health, National Institute on Drug Abuse)

No Additional Items

Each item of this array must be:

Type: array of string

Abbreviation for the name of the granting agency or organization funding the study; include abbreviation for sub-agency administrative entity as second element in array if applicable (e.g. NIH, NIDA)

No Additional Items

Each item of this array must be:

Type: enum (of string)

Type of granting agency or organization funding the study

Must be one of:

  • "governmental"
  • "non-governmental, non-profit, not corporate affiliated"
  • "non-governmental, non-profit, corporate affiliated"
  • "non-governmental, for-profit"

Type: enum (of string)

The geographic reach of the granting agency or organization funding the study

Must be one of:

  • "international"
  • "national - non-US"
  • "national - US"
  • "state - US"
  • "local - US"

Type: string

The grant award ID or number. For NIH-funded studies this will be the project or award number and is distinct from the NIH application ID

Type: string

The grant award name. For NIH-funded studies this will be the project or award name and is distinct from the name or title associated with the NIH application ID

Type: array of object

Describe the primary and co-investigators of the study; one item in this array per investigator

No Additional Items

Each item of this array must be:

Type: object

Type: string

First name of study primary or co-investigator

Type: string

Middle initial of study primary or co-investigator

Type: string

Last name of study primary or co-investigator

Type: string

Institutional affiliation of study primary or co-investigator

Type: array of object

Add a structured identifier(s) for the investigator; one item in this array per structured identifier; e.g. one item for providing ORCID, another for providing RAS passport

No Additional Items

Each item of this array must be:

Type: object

Type: enum (of string)

Type of identifier that will be provided

Must be one of:

  • "internal NIH RePORTER ID"
  • "doi"
  • "ORCID"
  • "eRA Commons ID"
  • "RAS Passport"

Type: string

Value of the identifier of the type specified by ID_type

Type: string

Persistent identifier assigned to the study on the HEAL Platform; probably a HEAL Platform-branded doi

Type: string

The official citation the HEAL Platform will request be used to cite the study/data when the study/data is discovered/accessed via the Platform; will likely follow the format: Principal Investigator(s). Title. Place-of-Distribution and Distributor, Date-of-Distribution. DOI. version (where distributor will be: Platform via [Repository Name])

Type: object

Type: array of object

Describe the contact person(s) for the study. This is the person(s) who should be contacted for questions about the study; will be auto-set as NIH contact PI(s) if NIH-funded; one item in this array per contact person

No Additional Items

Each item of this array must be:

Type: object

Type: string

First name of study contact

Type: string

Middle initial of study contact

Type: string

Last name of study contact

Type: string

Institutional affiliation of study contact

Type: stringFormat: email

Institutional email of study contact

Type: array of object

Describe the person(s) who will register the study on the HEAL Platform. This person(s) must be authorized to access the study registration page/process on the HEAL Platform; will be auto-set as NIH contact PI(s) if NIH-funded; one item in this array per registrant

No Additional Items

Each item of this array must be:

Type: object

Type: string

First name of study registrant

Type: string

Middle initial of study registrant

Type: string

Last name of study registrant

Type: string

Institutional affiliation of study registrant

Type: stringFormat: email

Institutional email of study registrant

Type: object

Type: boolean

Indicate whether or not the study will collect/produce (primary or secondary) data

Type: enum (of string)

If study will collect/produce data, indicate whether all, some, or none of the data will be made available

Must be one of:

  • "all"
  • "some"
  • "none"

Type: enum (of string)

If study will collect/produce data, and make at least some of that data available, indicate whether all, some, or none of the data will have restriction(s) on access beyond acknowledgement and signing of a minimal DSA

Must be one of:

  • "all"
  • "some"
  • "none"

Type: enum (of string)

If study will collect/produce data, indicate whether the study has not started, has started, or has finished data collection/production activities

Must be one of:

  • "not started"
  • "started"
  • "finished"

Type: enum (of string)

If the study will collect/produce data and make at least some of the data available, indicate whether the study has not started, has started, or has finished data release activities

Must be one of:

  • "not started"
  • "started"
  • "finished"

Type: stringFormat: date

If the study will collect/produce data, indicate the anticipated date when data collection/production will begin

Type: stringFormat: date

If the study will collect/produce data, indicate the anticipated date when data collection/production will end (data collection/production is complete)

Type: stringFormat: date

If study will collect/produce data and make at least some of the data available, indicate the anticipated date when first data will be released

Type: stringFormat: date

If study will produce data and make at least some of the data available, indicate the anticipated date when last data will be released (data release is complete)

Type: boolean

Indicate whether or not the study will produce shareable products other than data

Type: object

Type: array of string

List of the doi for any/all primary study publications that use the study data; include any papers, books, articles, blog posts, etc. authored by the investigators or team responsible for the study; one item in this array per publication/doi

No Additional Items

Each item of this array must be:

Type: array of string

Simple, one-sentence take-away conclusion(s) from study author publications; one item in this array per single-sentence conclusion (e.g. item #1: Provision of MAT rx to men with documented OUD leaving jail reduces overdose risk by 9%; item #2: Provision of MAT rx plus case management support to men with documented OUD leaving jail reduces overdose risk by 30%; item 3: Provision of MAT rx plus case management support to men with documented OUD leaving jail is more effective than provision of MAT rx alone at reducing risk of OUD overdose)

No Additional Items

Each item of this array must be:

Type: array of string

List of the doi for any/all secondary study publications that use the study data; include any papers, books, articles, blog posts, etc. authored by persons OTHER THAN the investigators or team responsible for the study; one item in this array per publication/doi

No Additional Items

Each item of this array must be:

Type: object

Type: enum (of string)

Whether the study is primarily focused on learning more about a human opioid or pain CONDITION or on discovering, or learning more about a TREATMENT OF A CONDITION, intervention, or solution for a human opioid or pain condition. This may be quite simple to infer for human subject studies. For studies not involving human subjects, please consider how/where the study will most substantially contribute to the HEAL Initiative translational purpose of learning more about human opioid and pain conditions and driving development of solutions to these conditions. Note there are some studies that are not related to a specific condition or the treatment of a condition. An example of a study like this is the National Institute on Drug Abuse (NIDA) study Incarceration Effects on Medicaid Status. If a study like this does not apply to a condition or treatment, this question can be left blank.Choose one.

Must be one of:

  • "Condition"
  • "Treatment of a Condition"

Type: array of enum (of string)

What types of determinants and/or mechanisms related to human opioid use or pain conditions is the study investigating and/or measuring (e.g. A study investigating differential pain/nociception signaling in persons living in neighborhoods with high versus low social cohesion might choose both 'Biology and Health' and 'Social Determinants'). Choose as many as apply.

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Biology and Health"
  • "Mental Health"
  • "Social Determinants"
  • "Public Attitudes or Stigma"

Type: object

Type: array of enum (of string)

The high-level category or type/stage of research being conducted

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Pre-Research/Protocol Development"
  • "Basic Research"
  • "Pre-Clinical Research"
  • "Clinical Research"
  • "Implementation Research"
  • "Post-market Research"
  • "Business Development"
  • "Epidemiologic Research"

Type: enum (of string)

Is the study collecting data itself to analyze and draw conclusions or is it leveraging data collected by other entities to analyze and draw conclusions

Must be one of:

  • "Primary Research"
  • "Secondary Research"

Type: enum (of string)

Whether the study is observational (no explicit intervention) or experimental (some explicit intervention)

Must be one of:

  • "Observational Research"
  • "Experimental Research"

Type: array of enum (of string)

What is the actual species or entity that is experimentally or observationally studied in the research; each HEAL study will have translational relevance to humans, but not all HEAL studies directly study humans

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Human"
  • "Animal"
  • "Human cell/tissue/tissue model"
  • "Animal cell/tissue/tissue model"
  • "Molecule (e.g. chemical/protein engineering, protein crystallization)"

Type: array of enum (of string)

The overarching study type and more granular study design. Choose as many as apply

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Basic Research - Theory/Modeling"
  • "Basic Research - Applied"
  • "Basic Research - Method/Protocol development"
  • "Basic Research - Animal study"
  • "Basic Research - Cell study"
  • "Basic Research - Genetic study"
  • "Basic Research - Biochemistry study"
  • "Basic Research - Biophysical study"
  • "Basic Research - Gene sequencing"
  • "Basic Research - Genetic Engineering"
  • "Basic Research - Material Development"
  • "Basic Research - Device Development"
  • "Basic Research - Small molecule screen"
  • "Basic Research - High throughput screen"
  • "Basic Research - Screen, other"
  • "Clinical Research - Phase I"
  • "Clinical Research - Phase II"
  • "Clinical Research - Phase III"
  • "Clinical Research - Phase IV"
  • "Clinical Research - Therapy/drug study without intervention"
  • "Clinical Research - Case Report or Series"
  • "Preclinical Research"
  • "Randomized Control Trial"
  • "Pre/Post"
  • "Stepped Wedge"
  • "Regression Discontinuity"
  • "Difference in Differences"
  • "Cross-over"
  • "Natural Experiment"
  • "Cohort, prospective"
  • "Cohort, retrospective"
  • "Cohort - panel, longitudinal"
  • "Cohort - cross-sectional, longitudinal"
  • "Cohort - cross-sectional, single time-point"
  • "Case control"
  • "Ecological"
  • "Monitoring/surveillance"
  • "Inventory"
  • "Curation"
  • "Meta-analysis"
  • "Review"
  • "Review, Systematic"
  • "Review, Simple (narrative)"

Type: object

Type: array of enum (of string)

Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to.

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Female"
  • "Transgender woman/trans woman/male-to-female (MTF)"
  • "Male"
  • "Transgender man/trans man/female-to-male (FTM)"
  • "Genderqueer/gender nonconforming/neither exclusively male nor female"
  • "Other"

Type: array of enum (of string)

Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to.

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Heterosexual"
  • "Homosexual (gay/lesbian)"
  • "Bisexual"
  • "Asexual"
  • "Other"

Type: array of enum (of string)

Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to.

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Ambiguous"
  • "Female"
  • "Male"

Type: array of enum (of string)

Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Fetus"
  • "Infant, newborn (Birth to 1 month)"
  • "Infant (1 to 23 months)"
  • "Child, preschool (2 to 5 years)"
  • "Child (6 to 12 years)"
  • "Adolescent (13 to 18 years)"
  • "Adult (19 to 44 years)"
  • "Middle aged adult (45 to 64 years)"
  • "Aged adult (65 to 79 years)"
  • "Aged, 80 and over (80 years and over)"

Type: array of enum (of string)

Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to?

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Pregnant women"
  • "Human fetuses"
  • "Neonates"
  • "Prisoners"
  • "Children"
  • "Individuals with physical disabilities"
  • "Individuals with mental disabilities or cognitive impairments"
  • "Economically disadvantaged"
  • "Socially disadvantaged"
  • "Terminally ill or very sick"
  • "Racial or ethnic minorities"
  • "Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)"

Type: array of enum (of string)

For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Non US"
  • "US - National"
  • "US - Specific States"
  • "US - Specific Counties"
  • "AK"
  • "AL"
  • "AR"
  • "AZ"
  • "CA"
  • "CO"
  • "CT"
  • "DE"
  • "FL"
  • "GA"
  • "HI"
  • "IA"
  • "ID"
  • "IL"
  • "IN"
  • "KS"
  • "KY"
  • "LA"
  • "MA"
  • "MD"
  • "ME"
  • "MI"
  • "MN"
  • "MO"
  • "MS"
  • "MT"
  • "NC"
  • "ND"
  • "NE"
  • "NH"
  • "NJ"
  • "NM"
  • "NV"
  • "NY"
  • "OH"
  • "OK"
  • "OR"
  • "PA"
  • "RI"
  • "SC"
  • "SD"
  • "TN"
  • "TX"
  • "UT"
  • "VA"
  • "VT"
  • "WA"
  • "WI"
  • "WV"
  • "WY"

Type: object

Type: array of enum (of string)

If the study is investigating a treatment, intervention, or solution to a human opioid or pain condition, what type of investigation is the study undertaking? at what stage in the treatment investigation process does this study lie?

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "target discovery"
  • "target mechanism"
  • "treatment discovery"
  • "treatment mechanism"
  • "treatment efficacy"
  • "differential treatment efficacy"
  • "treatment implementation"
  • "treatment availability or accessibility"

Type: array of enum (of string)

Is the treatment, intervention, or solution that my study is relevant to meant to prevent the occurrance of a condition (e.g. development of a non-opioid drug for pain to prevent opioid exposure and addiction, case management and MAT for pregnant women to prevent in utero exposure to opioids, safe needle exchange center to prevent spread of blood borne diseases among people using heroin), treat an occurrance of a condition (e.g. naloxone to treat opioid overdose, physical therapy to treat existing pain from a back injury) , and/or is it a harm reduction mechanism (e.g. safe needle exchange reduces harm associated with heroin addiction/use, decriminalization of heroin possession or use reduces the harm associated with heroin addiction/use)

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Preventive (prevention of an occurrence)"
  • "Therapeutic (treating an occurrence)"
  • "Harm Reduction (preventing more of an occurrence, or preventing harm from an occurrence)"

Type: array of enum (of string)

Is the treatment, intervention, or solution that my study is relevant to totally novel, is it totally established, does it have some element of novelty added to an established intervention (novel added to established, established used in a novel population, setting, or combination)?

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Novel"
  • "Novel, added to established"
  • "Established"
  • "Established, used in novel population, setting, or combination"

Type: array of enum (of string)

Is the treatment, intervention, or solution that my study is relevant to applied at the individual level (e.g. a doctor prescribes a drug or physical therapy regimen to a patient) or at the population/community/group level (e.g. a city changes good samaritan naloxone laws, or implements a safe needle exchange center, or adds park maintenance resources to the budget to provide more access to outside places to exercise)?

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Individual"
  • "Population"

Type: array of enum (of string)

Classify the treatment, intervention, or solution the study is relevant to by broad type of intervention. Choose as many as apply

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "drug"
  • "non-opioid drug"
  • "opioid drug"
  • "non-biologic drug"
  • "biologic drug"
  • "non-drug"
  • "device"
  • "behavioral"
  • "psychotherapy"
  • "group therapy"
  • "physical therapy"
  • "exercise"
  • "education"
  • "community resources/supports"
  • "economic supports"
  • "housing supports"
  • "case management"
  • "environmental (indoors)"
  • "environmental (outdoors)"
  • "law/policy"
  • "surgical procedure"
  • "nutritional"
  • "nutritional supplement"
  • "gene therapy"
  • "immunotherapy"
  • "electrotherapy"

Type: object

Type: array of enum (of string)

Considering the study in a translational context, to humans with which broad category(ies) of opioid use or pain conditions are the study results intended to apply. Choose as many as apply

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Opioid use and opioid use disorder"
  • "Opioid use and opioid use disorder, primary occurrence"
  • "Opioid use and opioid use disorder, relapse"
  • "Opioid use and opioid use disorder, chronic"
  • "Opioid overdose"
  • "Opioid exposure"
  • "(Non-opioid) Substance use"
  • "Co-occurring (Opioid or Non-opioid) Substance use and Mental Health disorder"
  • "Pain"
  • "Pain, acute"
  • "Pain, chronic"
  • "Pain, acute to chronic transition"
  • "Pain, resulting from injury"
  • "Pain, resulting from surgery"
  • "Pain, resulting from chronic illness"
  • "Pain, idiopathic (unknown origin)"

Type: array of enum (of string)

Each HEAL study will be doing work that is relevant to a human opioid and/or pain condition. What does this study intend to learn about the condition? If the study is investigating a treatment, intervention, or solution, please choose 'Treatment of Condition'. Choose as many as apply

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Incidence of condition"
  • "Risk for condition"
  • "Differential risk for condition"
  • "Mechanism of condition"
  • "Impact of condition"
  • "Public attitudes towards or perception of condition"
  • "Treatment of condition"

Type: array of string

If the study will be doing work that is relevant to a human PAIN condition category, is the study focusing on pain caused by a specific condition? e.g. Cancer, fibromyalgia, arthritis, occupational injury, sports injury, car accident, surgical procedure. If yes, please indicate the causal condition(s) here - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView

No Additional Items

Each item of this array must be:

Type: array of enum (of string)

If the study will be doing work that is relevant to a human PAIN condition category, and the pain condition has a causal condition (specified above), is the study focusing its investigation on the causal condition, or on the pain resulting from the causal condition? e.g. In a study of effective treatments for fibromyalgia/fibromyalgia pain, is the study focused on fibromyalgia disease-modifying treatments, or on treatments that address the symptomology of pain? Choose as many as apply

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Causal Condition"
  • "Pain"
  • "Pain, acute"
  • "Pain, chronic"

Type: array of string

Considering the study in a translational context, to humans with which detailed type of opioid use or pain conditions are the study results intended to apply? Each HEAL study will be doing work that is relevant to a human opioid and/or pain condition; You indicated the broad category of condition(s) the study is focusing on or relevant to above. Here, please indicate the study focus condition(s) in detail. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView

No Additional Items

Each item of this array must be:

Type: array of string

If the outcome condition(s) the study hopes to impact or measure is different than the treatment or study target condition (e.g. testing a disease-modifying fibromyaligia treatment but measuring depression, physical and social function, and neurologic pain such as headaches as the main outcomes). Please indicate the study outcome condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView

No Additional Items

Each item of this array must be:

Type: array of string

If the study is measuring or tracking other human health conditions besides the treatment or study target condition and outcome condition, please indicate the other tracked/measured condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView

No Additional Items

Each item of this array must be:

Type: object

Type: array of enum (of string)

Does the study produce/collect quantitative data?, qualitative data? Choose as many as apply

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Quantitative"
  • "Qualitative"

Type: array of enum (of string)

What is the source of the data the study will produce/collect. Choose as many as apply

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Administrative"
  • "Government Collected/Measured"
  • "Clinical/EHR"
  • "Laboratory"
  • "Researcher Collected/Measured"
  • "Patient-Reported"

Type: array of enum (of string)

What is the type of the data the study will produce/collect. Choose as many as apply

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Genomic"
  • "Proteomic"
  • "Biochemical"
  • "Biophysical"
  • "Imaging"
  • "Interview/Focus Group"
  • "Interview/Focus Group - structured"
  • "Interview/Focus Group - semi-structured"
  • "Interview/Focus Group - unstructured"
  • "Questionnaire/Survey/Assessment"
  • "Questionnaire/Survey/Assessment - validated instrument"
  • "Questionnaire/Survey/Assessment - unvalidated instrument"

Type: array of enum (of string)

For studies with human subjects, is the data collected at the individual or population level?

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Individual"
  • "Community, Group, Cluster, Population"

Type: integer

For studies with human subjects, what is the expected number of subjects for which data will be collected? If unit of data collection is individuals this is the expected number of individuals, and if the unit of data collection is populations/clusters this is the expected number of populations/clusters

Type: array of enum (of string)

For studies with human subjects, is the data analyzed at the individual or population level?

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Individual"
  • "Community, Group, Cluster, Population"

Type: integer

For studies with human subjects, what is the expected number of subjects at the level at which data will be analyzed? If unit of data analysis is individuals this is the expected number of individuals, and if the unit of data analysis is populations/clusters this is the expected number of populations/clusters

Type: array of enum (of string)

For studies with human subjects that will make at least some data available, will data be made available at the individual subject level or some level of aggregation?

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Individual - Unaggregated"
  • "Individual - Aggregated"
  • "Community, Group, Cluster, Population - Unaggregated"
  • "Community, Group, Cluster, Population - Aggregated"
  • "Unaggregated"
  • "Aggregated"
  • "Aggregated, across all (population summary statistics)"
  • "Aggregated, by treatment/exposure group"
  • "Aggregated, by demographic variable(s)"
  • "Aggregated, by geographic variable(s)"

Type: array of enum (of string)

For studies with human subjects, will geographic data be collected? if so, what level of geographic detail will be collected?

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Exact location"
  • "Census block"
  • "Census tract"
  • "Zip code"
  • "County"
  • "Sub-state region"
  • "State"
  • "Multi-state region"
  • "Nation"
  • "No geographic data will be collected"

Type: array of enum (of string)

For studies with human subjects that collect geographic data and will make at least some data available, will geographic data be made available? if so, what level of geographic detail will be made available?

No Additional Items

Each item of this array must be:

Type: enum (of string)

Must be one of:

  • "Exact location"
  • "Census block"
  • "Census tract"
  • "Zip code"
  • "County"
  • "Sub-state region"
  • "State"
  • "Multi-state region"
  • "Nation"
  • "No geographic data will be made available"
\ No newline at end of file diff --git a/study-level-metadata-schema/schema-clean/json/study-metadata-schema.json b/study-level-metadata-schema/schema-clean/json/study-metadata-schema.json index db322eb..a858c59 100644 --- a/study-level-metadata-schema/schema-clean/json/study-metadata-schema.json +++ b/study-level-metadata-schema/schema-clean/json/study-metadata-schema.json @@ -35,7 +35,7 @@ "alternative_study_name": { "description": "Study nickname, alternative title, abbreviation, or acronym (e.g. many people shorten the name of the HEAL Adolescent Brain Cognitive Development study to ABCD)", "type": "string", - "label": "Study Nickname or Alternative Title" + "label": "Alternative Study Title or Name" }, "alternative_study_description": { "description": "An alternative description of or abstract for the study. - Generally, for studies with an NIH appl id, if this field is filled out, the text will be searchable on the Platform, but the NIH appl id abstract text will be the study description displayed for the study in the Platform study table entry.", @@ -101,9 +101,9 @@ "label": "CEDAR Study-level Metadata Template Instance ID" }, "other_study_websites": { - "description": "any other websites officially associated with this study that provide additional information about the study", + "description": "Other websites officially associated with this study that provide additional information about the study", "type": "array", - "label": "Other Study Websites", + "label": "Other Study-Associated Websites", "items": { "type": "string", "$ref": "#/definitions/saneUrl" @@ -390,7 +390,8 @@ }, "produce_other": { "description": "Indicate whether or not the study will produce shareable products other than data", - "type": "boolean" + "type": "boolean", + "label": "Will study produce shareable products other than data?" } } }, @@ -563,6 +564,125 @@ } } }, + "human_subject_applicability": { + "type": "object", + "required": [], + "properties": { + "gender_applicability": { + "description": "Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to.", + "type": "array", + "label": "Do the results of your study have special applicability for humans of specific gender identity(s)? If so, mark all gender identity(s) for which the results of your study have special applicability.", + "items": { + "type": "string", + "enum": [ + "Female", + "Transgender woman/trans woman/male-to-female (MTF)", + "Male", + "Transgender man/trans man/female-to-male (FTM)", + "Genderqueer/gender nonconforming/neither exclusively male nor female", + "Other" + ] + } + }, + "sexual_identity_applicability": { + "description": "Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to.", + "type": "array", + "label": "Do the results of your study have special applicability for humans of specific sexual identity(s)? If so, mark all sexual identity(s) for which the results of your study have special applicability.", + "items": { + "type": "string", + "enum": [ + "Heterosexual", + "Homosexual (gay/lesbian)", + "Bisexual", + "Asexual", + "Other" + ] + } + }, + "biological_sex_applicability": { + "description": "Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to.", + "type": "array", + "label": "Do the results of your study have special applicability for humans of specific biological sex(s)? If so, mark all biological sex(s) for which the results of your study have special applicability.", + "items": { + "type": "string", + "enum": [ + "Ambiguous", + "Female", + "Male" + ] + } + }, + "age_applicability": { + "description": "Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to", + "type": "array", + "label": "Do the results of your study have special applicability for humans of specific age/developmental stage(s)? If so, mark all age/developmental stage(s) for which the results of your study have special applicability.", + "items": { + "type": "string", + "enum": [ + "Fetus", + "Infant, newborn (Birth to 1 month)", + "Infant (1 to 23 months)", + "Child, preschool (2 to 5 years)", + "Child (6 to 12 years)", + "Adolescent (13 to 18 years)", + "Adult (19 to 44 years)", + "Middle aged adult (45 to 64 years)", + "Aged adult (65 to 79 years)", + "Aged, 80 and over (80 years and over)" + ] + } + }, + "irb_vulnerability_conditions_applicability": { + "description": "Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to?", + "type": "array", + "label": "Do the results of your study have special applicability for humans of specific vulnerability condition(s)? If so, mark all special vulnerability condition(s) for which the results of your study have special applicability.", + "items": { + "type": "string", + "enum": [ + "Pregnant women", + "Human fetuses", + "Neonates", + "Prisoners", + "Children", + "Individuals with physical disabilities", + "Individuals with mental disabilities or cognitive impairments", + "Economically disadvantaged", + "Socially disadvantaged", + "Terminally ill or very sick", + "Racial or ethnic minorities", + "Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)" + ] + } + }, + "geographic_applicability": { + "description": "For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited", + "type": "array", + "label": "Human Subject Studies: Where do human subjects of the study reside or obtain care during the course of the study - To humans in which geographical locations do the study results apply?", + "items": { + "type": "string", + "enum": [ + "Non US", + "US - National", + "US - Specific States", + "US - Specific Counties", + "AK","AL","AR","AZ", + "CA","CO","CT","DE", + "FL","GA","HI","IA", + "ID","IL","IN","KS", + "KY","LA","MA","MD", + "ME","MI","MN","MO", + "MS","MT","NC","ND", + "NE","NH","NJ","NM", + "NV","NY","OH","OK", + "OR","PA","RI","SC", + "SD","TN","TX","UT", + "VA","VT","WA","WI", + "WV","WY" + ] + } + } + } + }, "human_treatment_applicability": { "type": "object", "required": [], @@ -588,7 +708,7 @@ "treatment_mode": { "description": "Is the treatment, intervention, or solution that my study is relevant to meant to prevent the occurrance of a condition (e.g. development of a non-opioid drug for pain to prevent opioid exposure and addiction, case management and MAT for pregnant women to prevent in utero exposure to opioids, safe needle exchange center to prevent spread of blood borne diseases among people using heroin), treat an occurrance of a condition (e.g. naloxone to treat opioid overdose, physical therapy to treat existing pain from a back injury) , and/or is it a harm reduction mechanism (e.g. safe needle exchange reduces harm associated with heroin addiction/use, decriminalization of heroin possession or use reduces the harm associated with heroin addiction/use)", "type": "array", - "label": "Treatment Mode - Preventive, Therapeutic, Harm Reduction", + "label": "Treatment Mode", "items": { "type": "string", "enum": [ @@ -758,125 +878,6 @@ } }, - "human_subject_applicability": { - "type": "object", - "required": [], - "properties": { - "gender_applicability": { - "description": "Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to.", - "type": "array", - "label": "To humans of which gender identity(ies) do study results apply?", - "items": { - "type": "string", - "enum": [ - "Female", - "Female-to-male transsexual", - "Intersexed", - "Male", - "Male-to-female transsexual", - "Other" - ] - } - }, - "sexual_identity_applicability": { - "description": "Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to.", - "type": "array", - "label": "To humans of which sexual identity(ies) do study results apply?", - "items": { - "type": "string", - "enum": [ - "Heterosexual", - "Homosexual (gay/lesbian)", - "Bisexual", - "Asexual", - "Other" - ] - } - }, - "biological_sex_applicability": { - "description": "Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to.", - "type": "array", - "label": "To humans of which biological sexes do study results apply?", - "items": { - "type": "string", - "enum": [ - "Ambiguous", - "Female", - "Male" - ] - } - }, - "age_applicability": { - "description": "Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to", - "type": "array", - "label": "To humans of which age/developmental stage do study results apply?", - "items": { - "type": "string", - "enum": [ - "Fetus", - "Infant, newborn (Birth to 1 month)", - "Infant (1 to 23 months)", - "Child, preschool (2 to 5 years)", - "Child (6 to 12 years)", - "Adolescent (13 to 18 years)", - "Adult (19 to 44 years)", - "Middle aged adult (45 to 64 years)", - "Aged adult (65 to 79 years)", - "Aged, 80 and over (80 years and over)" - ] - } - }, - "irb_vulnerability_conditions_applicability": { - "description": "Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to?", - "type": "array", - "label": "To humans in which special vulnerability categories do study results apply?", - "items": { - "type": "string", - "enum": [ - "Pregnant women", - "Human fetuses", - "Neonates", - "Prisoners", - "Children", - "Individuals with physical disabilities", - "Individuals with mental disabilities or cognitive impairments", - "Economically disadvantaged", - "Socially disadvantaged", - "Terminally ill or very sick", - "Racial or ethnic minorities", - "Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)" - ] - } - }, - "geographic_applicability": { - "description": "For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited", - "type": "array", - "label": "To humans of which age/developmental stage do study results apply?", - "items": { - "type": "string", - "enum": [ - "Non US", - "US - National", - "US - Specific States", - "US - Specific Counties", - "AK","AL","AR","AZ", - "CA","CO","CT","DE", - "FL","GA","HI","IA", - "ID","IL","IN","KS", - "KY","LA","MA","MD", - "ME","MI","MN","MO", - "MS","MT","NC","ND", - "NE","NH","NJ","NM", - "NV","NY","OH","OK", - "OR","PA","RI","SC", - "SD","TN","TX","UT", - "VA","VT","WA","WI", - "WV","WY" - ] - } - } - } - }, "data": { "type": "object", "required": [], @@ -912,7 +913,7 @@ "data_type": { "description": "What is the type of the data the study will produce/collect. Choose as many as apply", "type": "array", - "label": "Type of Data", + "label": "Data Type", "items": { "type": "string", "enum": [ diff --git a/study-level-metadata-schema/schema-clean/md/study-metadata-schema-for-humans.md b/study-level-metadata-schema/schema-clean/md/study-metadata-schema-for-humans.md index 2342aba..2822b08 100644 --- a/study-level-metadata-schema/schema-clean/md/study-metadata-schema-for-humans.md +++ b/study-level-metadata-schema/schema-clean/md/study-metadata-schema-for-humans.md @@ -20,7 +20,7 @@ - **`repository_persistent_ID`** *(string)*: Unique persistent identifier assigned to the study at that repository; usually a doi. - **`repository_citation`** *(string)*: The official citation the repository requests be used to cite the study/data when the study/data is discovered/accessed via the repository; will likely follow the format: Principal Investigator(s). Title. Place-of-Distribution and Distributor, Date-of-Distribution. DOI. version (where distributor will be the repository name). - **`cedar_study_level_metadata_template_instance_ID`** *(string)*: ID of the CEDAR HEAL Study-level Core Metadata Template instance created for this study. - - **`other_study_websites`** *(array)*: any other websites officially associated with this study that provide additional information about the study. + - **`other_study_websites`** *(array)*: Other websites officially associated with this study that provide additional information about the study. - **Items** *(string)*: Refer to *#/definitions/saneUrl*. - **`citation`** *(object)* - **`heal_funded_status`** *(boolean)*: Whether or not the study is funded by the NIH HEAL initiative. @@ -95,6 +95,19 @@ - **Items** *(string)*: Must be one of: `['Human', 'Animal', 'Human cell/tissue/tissue model', 'Animal cell/tissue/tissue model', 'Molecule (e.g. chemical/protein engineering, protein crystallization)']`. - **`study_type_design`** *(array)*: The overarching study type and more granular study design. Choose as many as apply. - **Items** *(string)*: Must be one of: `['Basic Research - Theory/Modeling', 'Basic Research - Applied', 'Basic Research - Method/Protocol development', 'Basic Research - Animal study', 'Basic Research - Cell study', 'Basic Research - Genetic study', 'Basic Research - Biochemistry study', 'Basic Research - Biophysical study', 'Basic Research - Gene sequencing', 'Basic Research - Genetic Engineering', 'Basic Research - Material Development', 'Basic Research - Device Development', 'Basic Research - Small molecule screen', 'Basic Research - High throughput screen', 'Basic Research - Screen, other', 'Clinical Research - Phase I', 'Clinical Research - Phase II', 'Clinical Research - Phase III', 'Clinical Research - Phase IV', 'Clinical Research - Therapy/drug study without intervention', 'Clinical Research - Case Report or Series', 'Preclinical Research', 'Randomized Control Trial', 'Pre/Post', 'Stepped Wedge', 'Regression Discontinuity', 'Difference in Differences', 'Cross-over', 'Natural Experiment', 'Cohort, prospective', 'Cohort, retrospective', 'Cohort - panel, longitudinal', 'Cohort - cross-sectional, longitudinal', 'Cohort - cross-sectional, single time-point', 'Case control', 'Ecological', 'Monitoring/surveillance', 'Inventory', 'Curation', 'Meta-analysis', 'Review', 'Review, Systematic', 'Review, Simple (narrative)']`. +- **`human_subject_applicability`** *(object)* + - **`gender_applicability`** *(array)*: Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to. + - **Items** *(string)*: Must be one of: `['Female', 'Transgender woman/trans woman/male-to-female (MTF)', 'Male', 'Transgender man/trans man/female-to-male (FTM)', 'Genderqueer/gender nonconforming/neither exclusively male nor female', 'Other']`. + - **`sexual_identity_applicability`** *(array)*: Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to. + - **Items** *(string)*: Must be one of: `['Heterosexual', 'Homosexual (gay/lesbian)', 'Bisexual', 'Asexual', 'Other']`. + - **`biological_sex_applicability`** *(array)*: Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to. + - **Items** *(string)*: Must be one of: `['Ambiguous', 'Female', 'Male']`. + - **`age_applicability`** *(array)*: Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to. + - **Items** *(string)*: Must be one of: `['Fetus', 'Infant, newborn (Birth to 1 month)', 'Infant (1 to 23 months)', 'Child, preschool (2 to 5 years)', 'Child (6 to 12 years)', 'Adolescent (13 to 18 years)', 'Adult (19 to 44 years)', 'Middle aged adult (45 to 64 years)', 'Aged adult (65 to 79 years)', 'Aged, 80 and over (80 years and over)']`. + - **`irb_vulnerability_conditions_applicability`** *(array)*: Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to? + - **Items** *(string)*: Must be one of: `['Pregnant women', 'Human fetuses', 'Neonates', 'Prisoners', 'Children', 'Individuals with physical disabilities', 'Individuals with mental disabilities or cognitive impairments', 'Economically disadvantaged', 'Socially disadvantaged', 'Terminally ill or very sick', 'Racial or ethnic minorities', 'Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)']`. + - **`geographic_applicability`** *(array)*: For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited. + - **Items** *(string)*: Must be one of: `['Non US', 'US - National', 'US - Specific States', 'US - Specific Counties', 'AK', 'AL', 'AR', 'AZ', 'CA', 'CO', 'CT', 'DE', 'FL', 'GA', 'HI', 'IA', 'ID', 'IL', 'IN', 'KS', 'KY', 'LA', 'MA', 'MD', 'ME', 'MI', 'MN', 'MO', 'MS', 'MT', 'NC', 'ND', 'NE', 'NH', 'NJ', 'NM', 'NV', 'NY', 'OH', 'OK', 'OR', 'PA', 'RI', 'SC', 'SD', 'TN', 'TX', 'UT', 'VA', 'VT', 'WA', 'WI', 'WV', 'WY']`. - **`human_treatment_applicability`** *(object)* - **`treatment_investigation_stage_or_type`** *(array)*: If the study is investigating a treatment, intervention, or solution to a human opioid or pain condition, what type of investigation is the study undertaking? at what stage in the treatment investigation process does this study lie? - **Items** *(string)*: Must be one of: `['target discovery', 'target mechanism', 'treatment discovery', 'treatment mechanism', 'treatment efficacy', 'differential treatment efficacy', 'treatment implementation', 'treatment availability or accessibility']`. @@ -121,19 +134,6 @@ - **Items** *(string)* - **`all_other_condition`** *(array)*: If the study is measuring or tracking other human health conditions besides the treatment or study target condition and outcome condition, please indicate the other tracked/measured condition(s) here. Choose as many as apply - Values will be restricted to NLM MeSH Diseases - see Branch 'C' here: https://meshb-prev.nlm.nih.gov/treeView. - **Items** *(string)* -- **`human_subject_applicability`** *(object)* - - **`gender_applicability`** *(array)*: Considering the study in a translational context, to humans of which gender identity(ies) are the study results intended to apply and/or likely to generalize to. - - **Items** *(string)*: Must be one of: `['Female', 'Female-to-male transsexual', 'Intersexed', 'Male', 'Male-to-female transsexual', 'Other']`. - - **`sexual_identity_applicability`** *(array)*: Considering the study in a translational context, to humans of which sexual identity(ies) are the study results intended to apply and/or likely to generalize to. - - **Items** *(string)*: Must be one of: `['Heterosexual', 'Homosexual (gay/lesbian)', 'Bisexual', 'Asexual', 'Other']`. - - **`biological_sex_applicability`** *(array)*: Considering the study in a translational context, to humans of which biological sexes are the study results intended to apply and/or likely to generalize to. - - **Items** *(string)*: Must be one of: `['Ambiguous', 'Female', 'Male']`. - - **`age_applicability`** *(array)*: Considering the study in a translational context, to humans of which age or developmental stage are the study results intended to apply and/or likely to generalize to. - - **Items** *(string)*: Must be one of: `['Fetus', 'Infant, newborn (Birth to 1 month)', 'Infant (1 to 23 months)', 'Child, preschool (2 to 5 years)', 'Child (6 to 12 years)', 'Adolescent (13 to 18 years)', 'Adult (19 to 44 years)', 'Middle aged adult (45 to 64 years)', 'Aged adult (65 to 79 years)', 'Aged, 80 and over (80 years and over)']`. - - **`irb_vulnerability_conditions_applicability`** *(array)*: Considering the study in a translational context, which special IRB human vulnerability conditions are the study results intended to address or apply to? - - **Items** *(string)*: Must be one of: `['Pregnant women', 'Human fetuses', 'Neonates', 'Prisoners', 'Children', 'Individuals with physical disabilities', 'Individuals with mental disabilities or cognitive impairments', 'Economically disadvantaged', 'Socially disadvantaged', 'Terminally ill or very sick', 'Racial or ethnic minorities', 'Institutionalized persons (for example, persons in correctional facilities, nursing homes or mental health facilities)']`. - - **`geographic_applicability`** *(array)*: For studies with human subjects, from which geographic location(s) are subjects recruited. If subjects are recruited in the US nationally, choose only US - national. If subject are recruited in the US only in specific state(s), choose US - Specific States, then please also select the abbreviation of each of the specific states from which subjects are recruited. If subjects are recruited in the US from specific county(ies) within specific state(s), please choose US - Specific States and US - Specific Counties, and choose the abbreviation of each specific state from which subjects are recruited. - - **Items** *(string)*: Must be one of: `['Non US', 'US - National', 'US - Specific States', 'US - Specific Counties', 'AK', 'AL', 'AR', 'AZ', 'CA', 'CO', 'CT', 'DE', 'FL', 'GA', 'HI', 'IA', 'ID', 'IL', 'IN', 'KS', 'KY', 'LA', 'MA', 'MD', 'ME', 'MI', 'MN', 'MO', 'MS', 'MT', 'NC', 'ND', 'NE', 'NH', 'NJ', 'NM', 'NV', 'NY', 'OH', 'OK', 'OR', 'PA', 'RI', 'SC', 'SD', 'TN', 'TX', 'UT', 'VA', 'VT', 'WA', 'WI', 'WV', 'WY']`. - **`data`** *(object)* - **`data_orientation`** *(array)*: Does the study produce/collect quantitative data?, qualitative data? Choose as many as apply. - **Items** *(string)*: Must be one of: `['Quantitative', 'Qualitative']`. diff --git a/study-level-metadata-schema/schema-linked/mesh/desc2020.json.gz b/study-level-metadata-schema/schema-linked/mesh/desc2020.json.gz deleted file mode 100644 index eb85845..0000000 Binary files a/study-level-metadata-schema/schema-linked/mesh/desc2020.json.gz and /dev/null differ diff --git a/study-level-metadata-schema/schema-linked/mesh/mesh-converted.json b/study-level-metadata-schema/schema-linked/mesh/mesh-converted.json deleted file mode 100644 index e6d481b..0000000 --- a/study-level-metadata-schema/schema-linked/mesh/mesh-converted.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "$id": "https://healdata.org/schemas/mesh-2020" -} \ No newline at end of file diff --git a/study-level-metadata-schema/schema-linked/mesh/mesh.json.gz b/study-level-metadata-schema/schema-linked/mesh/mesh.json.gz deleted file mode 100644 index 8876fe6..0000000 Binary files a/study-level-metadata-schema/schema-linked/mesh/mesh.json.gz and /dev/null differ diff --git a/study-level-metadata-schema/schema-linked/mesh/supp2020.json.gz b/study-level-metadata-schema/schema-linked/mesh/supp2020.json.gz deleted file mode 100644 index e2f24cf..0000000 Binary files a/study-level-metadata-schema/schema-linked/mesh/supp2020.json.gz and /dev/null differ