From a752b34d882e9e90b976aef5d2c186948582b37e Mon Sep 17 00:00:00 2001
From: Grahame Grieve <grahameg@gmail.ccom>
Date: Wed, 13 Dec 2023 14:09:33 -0500
Subject: [PATCH] more QA work

---
 .../generators/specification/ProfileGenerator.java | 14 ++++----------
 .../org/hl7/fhir/tools/publisher/Publisher.java    | 11 ++++++-----
 2 files changed, 10 insertions(+), 15 deletions(-)

diff --git a/src/main/java/org/hl7/fhir/definitions/generators/specification/ProfileGenerator.java b/src/main/java/org/hl7/fhir/definitions/generators/specification/ProfileGenerator.java
index 1f1b1c5..6ccbc7a 100644
--- a/src/main/java/org/hl7/fhir/definitions/generators/specification/ProfileGenerator.java
+++ b/src/main/java/org/hl7/fhir/definitions/generators/specification/ProfileGenerator.java
@@ -1121,10 +1121,7 @@ public StructureDefinition generate(Profile pack, ResourceDefn r, String usage,
     ToolResourceUtilities.updateUsage(p, usage);
     p.setName(r.getRoot().getName());
     if (r.getWg() != null) {
-      p.setPublisher("HL7 International"+(r.getWg() == null ? "" : " / "+r.getWg().getName()));
-      p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
-      p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, r.getWg().getUrl()));
-      ToolingExtensions.setCodeExtension(p, ToolingExtensions.EXT_WORKGROUP, r.getWg().getCode());
+      CanonicalResourceUtilities.setHl7WG(p, r.getWg().getCode());
     } else {
       CanonicalResourceUtilities.setHl7WG(p, "fhir");
     }
@@ -1451,11 +1448,9 @@ public SearchParameter makeSearchParam(StructureDefinition p, String id, String
       if (VersionIndependentResourceTypesAll.isValidCode(p.getType())) {
         sp.addBase(VersionIndependentResourceTypesAll.fromCode(p.getType()));
       } else {
-        // TODO: This is a problem with R5 enum at this point. For now,
-        // we leave it blank, but we have to figure this out before getting 
-        // serious r=with R6 QA
-        // sp.addBaseElement().setValueAsString(p.getType());
-        
+        Enumeration<VersionIndependentResourceTypesAll> t = sp.addBaseElement();
+        t.setValueAsString("Resource");
+        t.addExtension(ToolingExtensions.EXT_SEARCH_PARAMETER_BASE, new CodeType(p.getType()));
       }
     } else {
       if (sp.getType() != getSearchParamType(spd.getType()))
@@ -2731,7 +2726,6 @@ public StructureDefinition generateLogicalModel(ImplementationGuideDefn igd, Res
       CanonicalResourceUtilities.setHl7WG(p, "fhir");
     }
 
-    
     p.setDescription("Logical Model: "+r.getDefinition());
     p.setPurpose(r.getRoot().getRequirements());
     if (!p.hasPurpose())
diff --git a/src/main/java/org/hl7/fhir/tools/publisher/Publisher.java b/src/main/java/org/hl7/fhir/tools/publisher/Publisher.java
index 48a78ef..46ff07d 100644
--- a/src/main/java/org/hl7/fhir/tools/publisher/Publisher.java
+++ b/src/main/java/org/hl7/fhir/tools/publisher/Publisher.java
@@ -82,6 +82,7 @@ WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWIS
 import org.apache.commons.io.IOUtils;
 import org.apache.commons.lang3.StringUtils;
 import org.apache.tools.ant.DirectoryScanner;
+import org.apache.tools.ant.filters.StringInputStream;
 import org.eclipse.jgit.api.Git;
 import org.eclipse.jgit.api.errors.GitAPIException;
 import org.eclipse.jgit.lib.Ref;
@@ -5263,13 +5264,14 @@ private void processExample(Example e, ResourceDefn resn, StructureDefinition pr
         }
       }
       if (e.getResource() == null && e.getElement() == null) {
-        String xml = XMLUtil.elementToString(e.getXml().getDocumentElement());
+        String xml = XMLUtil.elementToString(e.getXml().getDocumentElement()).replace("<?xml version=\"1.0\" encoding=\"UTF-16\"?>", "").trim();
+        e.setElement(new Manager().parseSingle(page.getWorkerContext(), new StringInputStream(xml), FhirFormat.XML));
         e.setResource(new XmlParser().parse(xml));
       }
     } catch (Throwable ex) {
       StringWriter errors = new StringWriter();
       System.out.println("Error generating narrative for example "+e.getName()+": "+ex.getMessage());
-      ex.printStackTrace();
+//      ex.printStackTrace();
       XhtmlNode xhtml = new XhtmlNode(NodeType.Element, "div");
       xhtml.addTag("p").setAttribute("style", "color: maroon").addText("Error processing narrative: " + ex.getMessage());
       xhtml.addTag("p").setAttribute("style", "color: maroon").addText(errors.toString());
@@ -6871,13 +6873,12 @@ private void checkShareableValueSet(ValueSet vs) {
   private void generateValueSetsPart2() throws Exception {
 
     for (ValueSet vs : page.getDefinitions().getBoundValueSets().values()) {
-
-      page.log(" ...value set: "+vs.getId(), LogMessageType.Process);
+//      page.log(" ...value set: "+vs.getId(), LogMessageType.Process);
       generateValueSetPart2(vs);
     }
     for (String s : page.getDefinitions().getExtraValuesets().keySet()) {
       if (!s.startsWith("http:")) {
-        page.log(" ...value set: "+s, LogMessageType.Process);
+//        page.log(" ...value set: "+s, LogMessageType.Process);
         ValueSet vs = page.getDefinitions().getExtraValuesets().get(s);
         if (!page.getDefinitions().getBoundValueSets().containsKey(vs.getUrl())) {
           generateValueSetPart2(vs);