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<!DOCTYPE html>
<html>
<head>
<meta name="description" content="HRMAn - Host Response to Microbe Analysis" />
<title>HRMAn - Host Response to Microbe Analysis</title>
<link rel="shortcut icon" href="favicon.ico">
<!--<script src="ga.js"></script>-->
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<script async src="https://www.googletagmanager.com/gtag/js?id=UA-111014695-1"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'UA-111014695-1');
</script>
</head>
<body>
<!--<textarea theme="spacelab">-->
<xmp theme="cerulean" style="display:none;">
###[__Home__](index.html) : [__News__](news.html) : [__HRMAn2.0__](hrman2.html) : [__Sample data__](sample_data.html) : [__Downloads__](downloads.html) : [__Tutorials__](tutorials.html) : [__About us__](About_us.html)
####12.02.2019 - HRMAn published by elife
The article first describing the HRMAn analysis pipeline and its application has now officially been published by elife.
["Defining host–pathogen interactions employing an artificial intelligence workflow"](https://elifesciences.org/articles/40560)
A summary and press release can also be found on the [Crick Institute](https://www.crick.ac.uk/news/2019-02-12_new-ai-toolkit-is-the-scientist-that-never-sleeps) homepage.
####07.02.2019 - Sample datasets on Dryad
We have deposited more example datasets on [Dryad Digital Repository](https://datadryad.org). You can access the dataset there (doi:10.5061/dryad.6vq2mp0). It includes four subsets: Protein localisation analysis, GBP1 recruitment to *Toxoplasma* vacuoles, Interferon-gamma titration in A549 cells and *Salmonella* ubiquitination. You can use these datasets to test HRMAn for yourself.
Have fun!
####02.02.2019 - HRMAn 1.1
We have uploaded a new improved version of HRMAn ([HRMAn 1.1](https://github.com/HRMAn-Org/HRMAn)) to Github. It includes some new analyses features like fluorescence analysis for the cytotol and nuclei of infected host cells and more. HRMAn can now also analyse cells that have been infected with *Chlamydia*. We also made some changes to the workflow itself which will greatly enhance performance and stability.
####05.09.2018 - HRMAn on Biorxiv
We have uploaded the pre-print of the HRMAn publication to Biorxiv. Check it out!
["An Artificial Intelligence Workflow for Defining Host-Pathogen Interactions"](https://www.biorxiv.org/content/10.1101/408450v1)
More to follow soon.
</xmp>
<br><br>
<h5 style="color: #317eac; line-height: 28px; font-size: 18pt; font-family: 'Telex',sans-serif; text-align: center"> Copyright © 2017 - <script type="text/javascript">var year = new Date(); document.write(year.getFullYear());</script> <a href="https://frickellab.com/" style="color: #2fa4e7">HRMAn team</a>,<br><a href="https://www.crick.ac.uk/" style="color: #2fa4e7">The Francis Crick Institute,<br>London</a></h5>
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