Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[CV request] spike in sample metrics #257

Open
julianu opened this issue Dec 4, 2024 · 1 comment
Open

[CV request] spike in sample metrics #257

julianu opened this issue Dec 4, 2024 · 1 comment
Labels

Comments

@julianu
Copy link
Contributor

julianu commented Dec 4, 2024

What is the QC term's name?

spike in sample table

Briefly describe the QC term.

This table should hold several information about spike in measurements. It is basically an extension of the "QC2 sample intensities" (MS:4000079), but allowing any peptides, not only the ones in the QC2 sample.

The first column should be the spike in peptide, followed by metrics. For us, these are right now:

  • MS:1001843 ! MS1 feature maximum intensity
  • retention time (of this maximum intensity)
  • delta to expected retention time
  • number of identifications / PSMs

What is the QC term's unit?

No response

Value type

MS:4000005 ! table

Describe any additional information.

No response

@bittremieux
Copy link
Collaborator

Include column for mass accuracy as well.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

2 participants