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LBioProject

LBioProject (Learn Bioinformatics Project) is a project for learning the basics of bioinformatics.

How to run / perform test

Note:

  1. Make sure that perl version 5 is installed on the system.
  2. Change the permission of "LBioProject.sh" by using chmod +x ./LBioProject.sh or chmod 755 ./LBioProject.sh
# 1. Show help / available commands
./LBioProject.sh help

# 2. Run the project
./LBioProject.sh run

# 3. Perform test
./LBioProject.sh test

# 4. Clean the project (optional)
./LBioProject.sh clean

Available commands

1. set module (module name)

2. help

3. set report [basic / list / hash]

3. set input (function / subroutine from the specified module) (input)

4. run (function / subroutine from the specified module)

5. show_report

Note: help command is intended for showing the description of a module. So, make sure to set the module first, then run help command. set report is intended for using a specified template.

Example

set module Genomics::CentralDogma
set report basic
set input transcription tacgtgatt
run transcription
show_report

set module Genomics::CentralDogma
set report list
set input transcription augcacuaa
set input transcription true
run transcription
show_report

Every time show_report is executed, the project will terminate and create a report file inside /report folder

Features

  • Bioinformatics modules
  • Report
  • Web Display
  • Web Server / API