From 3e9198cf71587136d10fdd19533ad6b0468d68df Mon Sep 17 00:00:00 2001
From: Arsenios Chatzigeorgiou <49944135+arschat@users.noreply.github.com>
Date: Wed, 9 Oct 2024 12:37:13 +0100
Subject: [PATCH] Extend atlas names

---
 docs/jsonBrowser/module.md                    |  2 +-
 .../module/project/hca_bionetwork.json        | 27 ++++++++++++++-----
 json_schema/update_log.csv                    |  1 +
 3 files changed, 23 insertions(+), 7 deletions(-)

diff --git a/docs/jsonBrowser/module.md b/docs/jsonBrowser/module.md
index 8eefbf26f..4a75f09d9 100644
--- a/docs/jsonBrowser/module.md
+++ b/docs/jsonBrowser/module.md
@@ -365,7 +365,7 @@ Location: module/project/hca_bionetwork.json
 Property name | Description | Type | Required? | Object reference? | User friendly name | Allowed values | Example 
 --- | --- | --- | --- | --- | --- | --- | --- 
 name | HCA Bionetwork the project is a part of (e.g. Kidney).  | string | no |  | Official HCA Bionetwork | Adipose, Breast, Development, Eye, Genetic Diversity, Gut, Heart, Immune, Kidney, Liver, Lung, Musculoskeletal, Nervous System, Oral & Craniofacial, Organoid, Pancreas, Reproduction, Skin | Kidney; Lung
-hca_tissue_atlas | A field describing if the project is part of a HCA Tissue Atlas (e.g. Brain Alzheimer Atlas).  | string | no |  | HCA Tissue Atlas | Blood, Retina, Lung, Kidney, Gut, Eye, Brain | Blood Atlas
+hca_tissue_atlas | A field describing if the project is part of a HCA Tissue Atlas (e.g. Brain Alzheimer Atlas).  | string | no |  | HCA Tissue Atlas | Adipose, Blood, Brain, Breast, Development, Eye, Eye - Other, GDN, Gut, Heart, Immune, Kidney, Liver, Lung, MSK, ORCF, Organoid-Endoderm, Organoid-Neural, Pancreas Retina, Reproduction, Skin | Blood Atlas
 hca_tissue_atlas_version | A field describing which version of the HCA Tissue Atlas is associated with the project (e.g. v1.0; v2.0) | string | no |  | Official HCA Tissue Atlas Version |  | v1.0; v2.0
 atlas_project | A field describing if this project is the HCA Tissue Atlas project which integrates data from other datasets. | boolean | no |  | Project Tissue Atlas Status |  | Yes; No
 
diff --git a/json_schema/module/project/hca_bionetwork.json b/json_schema/module/project/hca_bionetwork.json
index 3eb42058c..992f2e720 100644
--- a/json_schema/module/project/hca_bionetwork.json
+++ b/json_schema/module/project/hca_bionetwork.json
@@ -48,14 +48,29 @@
             "description": "A field describing if the project is part of a HCA Tissue Atlas (e.g. Brain Alzheimer Atlas). ",
             "type": "string",
             "enum": [
+                "Adipose",
                 "Blood",
-                "Retina",
-                "Lung",
-                "Kidney",
-                "Gut",
+                "Brain",
+                "Breast",
+                "Development",
                 "Eye",
-                "Brain"
-            ],
+                "Eye - Other",
+                "GDN",
+                "Gut",
+                "Heart",
+                "Immune",
+                "Kidney",
+                "Liver",
+                "Lung",
+                "MSK",
+                "ORCF",
+                "Organoid-Endoderm",
+                "Organoid-Neural",
+                "Pancreas",
+                "Retina",
+                "Reproduction",
+                "Skin"
+                ],
             "user_friendly": "HCA Tissue Atlas",
             "guidelines": "For example: Blood Atlas",
             "example": "Blood Atlas"
diff --git a/json_schema/update_log.csv b/json_schema/update_log.csv
index 3231ff199..268d80bd3 100644
--- a/json_schema/update_log.csv
+++ b/json_schema/update_log.csv
@@ -1 +1,2 @@
 Schema,Change type,Change message,Version,Date
+module/project/hca_bionetwork,patch,Extend atlas names in hca_bionetwork,,
\ No newline at end of file