NOTE: This is work in progress.
An ontology to represent genomics cohort attributes. The GECKO is maintained by the CINECA project, https://www.cineca-project.eu, and standardises attributes commonly used for genomics cohort description as well as individual-level data items. A series of tools is being developed to enable automated generation of harmonised data files based on a JSON schema mapping file. For more information please contact [email protected]
GECKO currently has two products:
gecko.owl: the OBO version of GECKOviews/ihcc-gecko.owl: a view developed for International HundredK+ Cohorts Consortium
While the OBO view of GECKO conforms to OBO priniciples and reuses classes from upper-level ontologies such as BFO, the IHCC view rearranges the core GECKO terms (including some imported, lower-level terms) and groups them into 5 categories. The labels in the IHCC view are not the rdfs:label from the OBO version, but come from the "IHCC browser label" annotation property.
Distributed under the Creative Commons Attribution 4.0 International (CC BY 4.0) License. The GECKO logo was designed by Spencer Phillips - EMBL-EBI, 2021.