From a22515c22675422ed0b593a4e727ed553831297f Mon Sep 17 00:00:00 2001 From: cmungall Date: Thu, 21 Dec 2023 09:57:43 -0800 Subject: [PATCH] reconciled dumper changes between branches --- .../implementations/simpleobo/simple_obo_implementation.py | 2 +- src/oaklib/interfaces/dumper_interface.py | 4 +++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/src/oaklib/implementations/simpleobo/simple_obo_implementation.py b/src/oaklib/implementations/simpleobo/simple_obo_implementation.py index 719295e73..7f9682db8 100644 --- a/src/oaklib/implementations/simpleobo/simple_obo_implementation.py +++ b/src/oaklib/implementations/simpleobo/simple_obo_implementation.py @@ -643,7 +643,7 @@ def dump(self, path: Union[str, TextIO] = None, syntax: str = "obo", **kwargs): else: self.obo_document.dump(path) else: - super().dump(path, syntax) + super().dump(path, syntax=syntax) def save( self, diff --git a/src/oaklib/interfaces/dumper_interface.py b/src/oaklib/interfaces/dumper_interface.py index 6edbad497..40067bb59 100644 --- a/src/oaklib/interfaces/dumper_interface.py +++ b/src/oaklib/interfaces/dumper_interface.py @@ -79,4 +79,6 @@ def dump( logging.info(f"Using {converter}, kwargs={kwargs}") converter.curie_converter = self.converter kwargs = {k: v for k, v in kwargs.items() if v is not None} - converter.dump(ogdoc, target=path, format=syntax, **kwargs) + if "format" not in kwargs: + kwargs["format"] = syntax + converter.dump(ogdoc, target=path, **kwargs)