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Commits on Jan 31, 2025

• Adding crawl and chain commands (#826)

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  cmungall

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  22ebc5c

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Commits on Oct 22, 2024

• Adding more docs on how to use LLMs with OAK (#819)

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  cmungall

  authored
  7c2dc22

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Commits on Oct 18, 2024

• installing pandoc (#818)

  cmungall

  authored
  64fd0cf

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• Adding step to build pandoc for sphinx docs (#817)

  cmungall

  authored
  65ce452

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• pandoc

  cmungall

  committed
  0a8c608

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• Moved Jupter notebooks to be part of sphinx docs (#816)

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  cmungall

  authored
  cec9d19

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Commits on Oct 16, 2024

• Remove outdated warning, fix minor typos (#814)

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  ialarmedalien

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  5152b39

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Commits on Oct 1, 2024

• update docs (#808)

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  cmungall

  authored
  16e4beb

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• Update cli.rst (fixed very minor documentation error) (#804)

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  DnlRKorn

  authored
  adb26c6

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• graph projections and subset validation (#806)

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  cmungall

  authored
  8f6ed0c

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Commits on Aug 30, 2024

• Adding a .sample operator (#797)

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  cmungall

  authored
  8746e90

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Commits on Aug 29, 2024

• Enhanced heatmap functionality (#798)

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  cmungall

  authored
  d58eede

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Commits on Aug 22, 2024

• Add cache management features (#799)

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  gouttegd

  authored
  ecfa132

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Commits on Aug 21, 2024

• Add test for all_by_all_pairwise_similarity() in semsimian using custom IC map (#801)

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  justaddcoffee

  and

  Justin Reese

  authored
  c93a9dc

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Commits on Aug 20, 2024

• Bug in calculating all_by_all_pairwise_similarity (#800)

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  hrshdhgd

  authored
  7602658

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Commits on Aug 17, 2024

• Fix test suite (#796)

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  gouttegd

  authored
  ed29c27

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Commits on Aug 15, 2024

• Implementing NodeDeletion which was earlier a comment. (#791)

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  hrshdhgd

  authored
  a0bf7ae

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Commits on Aug 1, 2024

• set_label will INSERT if label not already presented. Fixes #788 (#789)

  cmungall

  authored
  2458242

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Commits on Jul 31, 2024

• Update sql_implementation.py to include sqlachemy output in debug logging. (#782)

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  DnlRKorn

  authored
  a112885

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• structured_format.pattern-style permissible value creation eg for MIxS (#785)

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  turbomam

  authored
  8d3d2db

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Commits on Jul 26, 2024

• Supporting skos mappings for simpleobo and pronto. (#766)

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  cmungall

  authored
  97f9047

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Commits on Jul 23, 2024

• Added change handler for kgcl.RemoveNodeFromSubset (#783)

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  hrshdhgd

  authored
  5bec328

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Commits on Jul 6, 2024

• information content enhancements (#781)

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  cmungall

  authored
  7774d90

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Commits on Jul 3, 2024

• Solves ClassCreation duplication & formats Mappings md table properly (#780)

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  hrshdhgd

  authored
  b32706b

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Commits on Jun 20, 2024

• rename edge to mapping (#775)

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  3 peopleauthored
  2baba34

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Commits on Jun 5, 2024

• Making prefix mapping less strict, fixes #702 (#761)

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  cmungall

  authored
  8b25588

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• New functionality: term usages (#776)

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  cmungall

  authored
  84bd709

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Commits on Jun 1, 2024

• Python level access to query expression language (#769)

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  cmungall

  authored
  d56db0e

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Commits on May 31, 2024

• Adding link to ontogenesis chapter on annotations. (#771)

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  cmungall

  authored
  19ae9d8

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Commits on May 30, 2024

• Adding MRCA example to expression docs (#768)

  cmungall

  authored
  e1d29b5

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Commits on May 16, 2024

• Pass custom IC map to Semsimian through CLI (#759)

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  caufieldjh

  and

  cmungall

  authored
  55c2709

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• More efficient association-based IC calculation. (#764)

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  cmungall

  authored
  377f5ac

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Commits on May 15, 2024

• Adding has-part glyph to config. (#765)

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  cmungall

  authored
  3daf347

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• removing unneccessary quotes in expression language guide (#762)

  cmungall

  authored
  11a74ab

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Commits on May 9, 2024

• Update to support new semsimian IC map functionality (#755)

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  caufieldjh

  authored
  aef24c8

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