New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Provide documentation on extracting synonym types #385

Closed

cmungall opened this issue Dec 6, 2022 · 1 comment

Collaborator

cmungall commented Dec 6, 2022

A common use case is being able to query for a table of synonyms, including full metadata, e.g

the entity-literal tuple
the predicate (scope)
any optional types (orthogonal to scope), e.g layperson
provenance

a challenge here is what ID to use for the synonym type, that are encoded as URIs/CURIEs like:

obo:chebi#BRAND_NAME
obo:hp#layperson

these are generally referred to by the codes / local parts of the ID, e.g BRAND_NAME, layperson

information-artifact-ontology/ontology-metadata#122

Collaborator Author

cmungall commented Dec 9, 2022

Added to the guide: https://incatools.github.io/ontology-access-kit/guide/aliases.html

cmungall closed this as completed

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment