{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":725653485,"defaultBranch":"main","name":"bioclip","ownerLogin":"Imageomics","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-11-30T15:40:33.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/77468321?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1724734310.0","currentOid":""},"activityList":{"items":[{"before":"8ce9b893f3572727382de5b0b626b3eff74243dd","after":"277ce9caec32f26eebb82726894e9c51dc82cc71","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-08-27T13:47:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Remove requirement for 'bioclip' project root directory name\n\nRunning from the repo root is in the docs, so this guardrail can be removed since it is overly restrictive","shortMessageHtmlLink":"Remove requirement for 'bioclip' project root directory name"}},{"before":"adf57dcc07f69d6cb7fe0489fc42f470be97ccc8","after":null,"ref":"refs/heads/website-update","pushedAt":"2024-08-27T04:51:50.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"work4cs","name":"Lisa","path":"/work4cs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47147576?s=80&v=4"}},{"before":"5b36a0377b16bdfabc798b493be23701fb63f1a4","after":"e12cc65357afb2d5abfae5b5c578cf4e4c5fb70b","ref":"refs/heads/gh-pages","pushedAt":"2024-08-27T04:51:47.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"work4cs","name":"Lisa","path":"/work4cs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47147576?s=80&v=4"},"commit":{"message":"update citation by adding pages (#24)","shortMessageHtmlLink":"update citation by adding pages (#24)"}},{"before":null,"after":"adf57dcc07f69d6cb7fe0489fc42f470be97ccc8","ref":"refs/heads/website-update","pushedAt":"2024-08-26T21:24:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"work4cs","name":"Lisa","path":"/work4cs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47147576?s=80&v=4"},"commit":{"message":"update citation by adding pages","shortMessageHtmlLink":"update citation by adding pages"}},{"before":"050b0b2c60ec1560205c2d59ef150ed9004d7208","after":null,"ref":"refs/heads/citation","pushedAt":"2024-08-26T21:17:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"work4cs","name":"Lisa","path":"/work4cs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47147576?s=80&v=4"}},{"before":"eb92d13d014ebfced42178b8504476ae0ac38814","after":"37d301fdbbf3aed0694a2a361b8080c1ae1d02b2","ref":"refs/heads/main","pushedAt":"2024-08-26T21:17:09.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"work4cs","name":"Lisa","path":"/work4cs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47147576?s=80&v=4"},"commit":{"message":"update pages in citation (#23)","shortMessageHtmlLink":"update pages in citation (#23)"}},{"before":null,"after":"050b0b2c60ec1560205c2d59ef150ed9004d7208","ref":"refs/heads/citation","pushedAt":"2024-08-26T21:05:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"work4cs","name":"Lisa","path":"/work4cs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47147576?s=80&v=4"},"commit":{"message":"update pages in citation","shortMessageHtmlLink":"update pages in citation"}},{"before":"536fccf52ed3442c77d4246ed080321e5d7c6fec","after":"8ce9b893f3572727382de5b0b626b3eff74243dd","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-08-22T21:10:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Reproduce and check catalog","shortMessageHtmlLink":"Reproduce and check catalog"}},{"before":"d7c8c609bb1c2916079fea4c1f1c7fa995a1bcd9","after":"64fdbca1148be57014a6910b47156e2a08b36fe2","ref":"refs/heads/docs/reconstruct","pushedAt":"2024-08-02T21:30:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"egrace479","name":"Elizabeth Campolongo","path":"/egrace479","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38985481?s=80&v=4"},"commit":{"message":"Update treeoflife10m.md\n\nmake_catalog_reproduce now slurm launch since it is long and resource intensive (update from commit 536fccf)","shortMessageHtmlLink":"Update treeoflife10m.md"}},{"before":"99a9933a5909c622ae9c4d1d302b0cd6bfc3dec2","after":"536fccf52ed3442c77d4246ed080321e5d7c6fec","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-08-01T16:49:12.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Run make_catalog_reproduce.py as slurm job","shortMessageHtmlLink":"Run make_catalog_reproduce.py as slurm job"}},{"before":"3eb360c981663b5a8189ac64b7d356d9984c7950","after":"99a9933a5909c622ae9c4d1d302b0cd6bfc3dec2","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-08-01T16:48:18.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Run make_catalog_reproduce.py as slurm job","shortMessageHtmlLink":"Run make_catalog_reproduce.py as slurm job"}},{"before":"c256b2dffacd092c057686a4e413900e2e077678","after":"3eb360c981663b5a8189ac64b7d356d9984c7950","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-08-01T16:47:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Run make_catalog_reproduce.py as slurm job","shortMessageHtmlLink":"Run make_catalog_reproduce.py as slurm job"}},{"before":"dfaf7f020b4ae48645036a660474214ce20e4e5e","after":"d7c8c609bb1c2916079fea4c1f1c7fa995a1bcd9","ref":"refs/heads/docs/reconstruct","pushedAt":"2024-07-24T20:46:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"egrace479","name":"Elizabeth Campolongo","path":"/egrace479","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38985481?s=80&v=4"},"commit":{"message":"Update treeoflife10m.md\n\nupdate data folder tags in checks to match CVPR-2024 as version (change in commit 39f9126)","shortMessageHtmlLink":"Update treeoflife10m.md"}},{"before":"1ffc6ca87a435c7a51cc0ba77315f86a0381ac24","after":"dfaf7f020b4ae48645036a660474214ce20e4e5e","ref":"refs/heads/docs/reconstruct","pushedAt":"2024-07-24T15:05:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"egrace479","name":"Elizabeth Campolongo","path":"/egrace479","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38985481?s=80&v=4"},"commit":{"message":"Update treeoflife10m.md\n\ncheck_wds now slurm launch since it is long and resource intensive (update from commit c256b2d)","shortMessageHtmlLink":"Update treeoflife10m.md"}},{"before":"5b2ddaee1a4abe2f4eae6847e51c6524d004f239","after":"c256b2dffacd092c057686a4e413900e2e077678","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-07-24T13:22:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Run check_wds.py as slurm job","shortMessageHtmlLink":"Run check_wds.py as slurm job"}},{"before":"6b0b47ea49ceae9768bd01dff441af165bbb0889","after":"1ffc6ca87a435c7a51cc0ba77315f86a0381ac24","ref":"refs/heads/docs/reconstruct","pushedAt":"2024-07-22T14:39:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"egrace479","name":"Elizabeth Campolongo","path":"/egrace479","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38985481?s=80&v=4"},"commit":{"message":"Update treeoflife10m.md\n\nAdd clarification for check webdataset step","shortMessageHtmlLink":"Update treeoflife10m.md"}},{"before":"75461dd90826763acb753b2034b997768ba597ed","after":"6b0b47ea49ceae9768bd01dff441af165bbb0889","ref":"refs/heads/docs/reconstruct","pushedAt":"2024-07-18T17:44:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"egrace479","name":"Elizabeth Campolongo","path":"/egrace479","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38985481?s=80&v=4"},"commit":{"message":"Add activation step for conda env in reproduction instructions","shortMessageHtmlLink":"Add activation step for conda env in reproduction instructions"}},{"before":"503bcdc733e84eec5c6e9833dd6c78a7a362c14f","after":"75461dd90826763acb753b2034b997768ba597ed","ref":"refs/heads/docs/reconstruct","pushedAt":"2024-07-18T15:15:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"egrace479","name":"Elizabeth Campolongo","path":"/egrace479","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38985481?s=80&v=4"},"commit":{"message":"Update ToL reproduce instructions with conda and HPC account settings","shortMessageHtmlLink":"Update ToL reproduce instructions with conda and HPC account settings"}},{"before":"39f912669833cb8d4bfa6aeb26841b62221ec0fc","after":"5b2ddaee1a4abe2f4eae6847e51c6524d004f239","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-07-18T14:54:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Remove unnecessary prefixes","shortMessageHtmlLink":"Remove unnecessary prefixes"}},{"before":"7e39078adf9686540faf5334924898d276c3b0b8","after":"39f912669833cb8d4bfa6aeb26841b62221ec0fc","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-07-18T14:48:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Change dataset tag for CVPR release\n\nCo-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>","shortMessageHtmlLink":"Change dataset tag for CVPR release"}},{"before":"330573404d8818d16433bf168ce021a53d3101c9","after":"7e39078adf9686540faf5334924898d276c3b0b8","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-07-16T14:24:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Fix race during unzip temp parent directory creation","shortMessageHtmlLink":"Fix race during unzip temp parent directory creation"}},{"before":"90a019d6a517c56e5c6f1172424e5a1a348e6b1a","after":"330573404d8818d16433bf168ce021a53d3101c9","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-07-15T19:41:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Fix temp change","shortMessageHtmlLink":"Fix temp change"}},{"before":"1d3417de53907f626590b768f5ff41eec3592a46","after":"90a019d6a517c56e5c6f1172424e5a1a348e6b1a","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-07-15T19:31:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Change to require download run from repo root","shortMessageHtmlLink":"Change to require download run from repo root"}},{"before":"2a05901cb483e2fae992c23b82275eede34f7293","after":"1d3417de53907f626590b768f5ff41eec3592a46","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-07-12T20:55:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Set SLurm account specification for download to command line argument","shortMessageHtmlLink":"Set SLurm account specification for download to command line argument"}},{"before":"45ba49296c94c00dadaa9608ec244f1779440b46","after":"2a05901cb483e2fae992c23b82275eede34f7293","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-07-12T19:36:45.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Fix bioscan download race conditions","shortMessageHtmlLink":"Fix bioscan download race conditions"}},{"before":"b7fc203a77434efbf6f595f85ef156dbf92012c3","after":"503bcdc733e84eec5c6e9833dd6c78a7a362c14f","ref":"refs/heads/docs/reconstruct","pushedAt":"2024-07-03T23:07:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"egrace479","name":"Elizabeth Campolongo","path":"/egrace479","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38985481?s=80&v=4"},"commit":{"message":"improve step 1 of reproduce tol-10m instructions\nfix file links and naming, add exact code to run to start process","shortMessageHtmlLink":"improve step 1 of reproduce tol-10m instructions"}},{"before":"f551454a2fe52ff85099203d13a1f3d136e5ad8d","after":"45ba49296c94c00dadaa9608ec244f1779440b46","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-07-03T19:47:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Increase iNat21 component walltime","shortMessageHtmlLink":"Increase iNat21 component walltime"}},{"before":"5728a8c93a02c9aefb2cb8d900b095caa3f6beb7","after":"b7fc203a77434efbf6f595f85ef156dbf92012c3","ref":"refs/heads/docs/reconstruct","pushedAt":"2024-07-03T17:47:09.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"egrace479","name":"Elizabeth Campolongo","path":"/egrace479","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38985481?s=80&v=4"},"commit":{"message":"Improve initial setup instruction clarity\n\nCo-authored-by: Matt Thompson \n\nCo-authored-by: Hilmar Lapp ","shortMessageHtmlLink":"Improve initial setup instruction clarity"}},{"before":"7555b4e00583687b128a12df2e0b70e6a7bc1522","after":"5728a8c93a02c9aefb2cb8d900b095caa3f6beb7","ref":"refs/heads/docs/reconstruct","pushedAt":"2024-07-03T17:45:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"egrace479","name":"Elizabeth Campolongo","path":"/egrace479","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/38985481?s=80&v=4"},"commit":{"message":"Improve initial setup instruction clarity\r\n\r\nCo-authored-by: Matt Thompson \r\n\r\nCo-authored-by: Hilmar Lapp ","shortMessageHtmlLink":"Improve initial setup instruction clarity"}},{"before":"55ad7bbea3547eaf53c217043513972ecb5db481","after":"f551454a2fe52ff85099203d13a1f3d136e5ad8d","ref":"refs/heads/reproduce_tol10m","pushedAt":"2024-07-03T17:34:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thompsonmj","name":"Matt Thompson","path":"/thompsonmj","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31709066?s=80&v=4"},"commit":{"message":"Update slurm/download_bioscan.slurm\n\nCo-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>","shortMessageHtmlLink":"Update slurm/download_bioscan.slurm"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEpW1SxgA","startCursor":null,"endCursor":null}},"title":"Activity ยท Imageomics/bioclip"}