[U26C] Pipeline reproduction (SPM deriv)

[cmaumet]

Softwares

SPM

Input data

derivatives (fMRIprep)

Additional context

Link to shared analysis code : https://github.com/gladomat/narps

List of tasks

Please tick the boxes below once the corresponding task is finished. 👍

• 👌 A maintainer of the project approved the issue, by assigning a 🏁status: ready for dev label to it.
• 🌳 Create a branch on your fork to start the reproduction.
• 🌅 Create a file team_{team_id}.py inside the narps_open/pipelines/ directory. You can use a file inside narps_open/pipelines/templates as a template if needed.
• 📥 Create a pull request as soon as you completed the previous task.
• 🧠 Write the code for the pipeline, using Nipype and the file architecture described in docs/pipelines.md.
• 📘 Make sure your code is documented enough.
• 🐍 Make sure your code is explicit and conforms with PEP8.
• 🔬 Create tests for your pipeline. You can use files in tests/pipelines/test_team_* as examples.
• 🔬 Make sure your code passes all the tests you created (see docs/testing.md).

[cmaumet]

@bclenet - checking the original code from the authors at https://github.com/gladomat/narps it looks like they are already using nipype 🎉 Can I leave this one to you then to refactor into narps_open?

[bclenet]

Correlation values :

Team	Number of subjects	Test status	Correlation values
U26C	20 subjects	failure	[0.67, 0.61, 0.67, 0.61, -0.53, -0.49, 0.53, 0.49, 0.4]

These looks promising, but the sign issue for hypothese 5 and 6 must be solved.

[bclenet]

Issue with H5 and H6 resolved.

Team	Number of subjects	Test status	Correlation values
U26C	20 subjects	success	[0.67, 0.61, 0.67, 0.61, 0.53, 0.49, 0.53, 0.49, 0.4]
U26C	40 subjects	success	[0.84, 0.79, 0.84, 0.79, 0.8, 0.71, 0.8, 0.71, 0.75]
U26C	60 subjects	failure	[0.9, 0.85, 0.9, 0.85, 0.93, 0.78, 0.93, 0.78, 0.86]

[bclenet]

Final correlation values

Team	Number of subjects	Test status	Correlation values
U26C	20 subjects	success	[0.67, 0.61, 0.67, 0.61, 0.53, 0.49, 0.53, 0.49, 0.4]
U26C	40 subjects	success	[0.84, 0.79, 0.84, 0.79, 0.8, 0.71, 0.8, 0.71, 0.75]
U26C	60 subjects	success	[0.9, 0.85, 0.9, 0.85, 0.93, 0.78, 0.93, 0.78, 0.86]
U26C	80 subjects	success	[0.95, 0.96, 0.95, 0.96, 0.96, 0.91, 0.96, 0.91, 0.94]
U26C	108 subjects	success	[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0]