[R9K3] Pipeline reproduction (SPM, deriv)

[Remi-Gau]

Softwares

SPM

Input data

derivatives (fMRIprep)

Additional context

This pipeline already exist but is incomplete and its structure does not conform to the update code architecture.

Opening an issue to track the refactoring and extension of its code.

List of tasks

Please tick the boxes below once the corresponding task is finished. 👍

• 👌 A maintainer of the project approved the issue, by assigning a 🏁status: ready for dev label to it.
• 🌳 Create a branch on your fork to start the reproduction.
• 🌅 Create a file team_{team_id}.py inside the narps_open/pipelines/ directory. You can use a file inside narps_open/pipelines/templates as a template if needed.
• 📥 Create a pull request as soon as you completed the previous task.
• 🧠 Write the code for the pipeline, using Nipype and the file architecture described in docs/pipelines.md.
• 📘 Make sure your code is documented enough.
• 🐍 Make sure your code is explicit and conforms with PEP8.
• 🔬 Create tests for your pipeline. You can use files in tests/pipelines/test_team_* as examples.
• 🔬 Make sure your code passes all the tests you created (see docs/testing.md).

[bclenet]

I am currently working on this pipeline.

[bclenet]

Looks promising !
Current correlation values :

Team	Number of subjects	Test status	Correlation values
R9K3	20	success	[0.60, 0.38, 0.60, 0.38, 0.50, 0.42, 0.50, 0.42, 0.37]
R9K3	40	failure	[0.76, 0.66, 0.76, 0.66, 0.76, 0.57, 0.76, 0.57, 0.65]
R9K3	60	failure	[0.83, 0.77, 0.83, 0.77, 0.85, 0.68, 0.85, 0.68, 0.77]
R9K3	80	failure	[0.87, 0.81, 0.87, 0.81, 0.88, 0.71, 0.88, 0.71, 0.79]
R9K3	108	failure	[0.91, 0.88, 0.91, 0.88, 0.92, 0.82, 0.92, 0.82, 0.89]

Tested with 102 subject (6 subject excluded by the team)

Team	Number of subjects	Correlation values
R9K3	102	[0.92, 0.93, 0.92, 0.93, 0.92, 0.89, 0.92, 0.89, 0.92]