From b79ffb415c916605c2cc01f91632e1cf491a21b6 Mon Sep 17 00:00:00 2001
From: JLSteenwyk <jlsteenwyk@gmail.com>
Date: Tue, 17 Dec 2024 17:22:19 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20=20@=20fea77?=
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---
 .doctrees/environment.pickle | Bin 24732 -> 24732 bytes
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 _sources/index.rst.txt       |   6 +++---
 index.html                   |   2 +-
 searchindex.js               |   2 +-
 5 files changed, 5 insertions(+), 5 deletions(-)

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diff --git a/_sources/index.rst.txt b/_sources/index.rst.txt
index 662ccf4..dfa0e99 100644
--- a/_sources/index.rst.txt
+++ b/_sources/index.rst.txt
@@ -8,10 +8,10 @@
 
 OrthoHMM using high sensitivity and specificity Hidden Markov Models for orthology inference.
 
-If you found OrthoHMM useful, please cite *MANUSCRIPT TITLE*. Steenwyk et al. 2020, JOURNAL. doi: |doiLink|_.
+If you found OrthoHMM useful, please cite *OrthoHMM: Improved Inference of Ortholog Groups using Hidden Markov Models*. Steenwyk et al. 2024, bioRxiv. doi: |doiLink|_.
 
-.. _doiLink: https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3001007
-.. |doiLink| replace:: 10.1371/journal.pbio.3001007
+.. _doiLink: https://www.biorxiv.org/content/10.1101/2024.12.07.627370v1
+.. |doiLink| replace:: 10.1101/2024.12.07.627370
 
 |
 
diff --git a/index.html b/index.html
index b76beee..ab7ee9f 100644
--- a/index.html
+++ b/index.html
@@ -80,7 +80,7 @@
 </a>
 <hr class="docutils" />
 <p>OrthoHMM using high sensitivity and specificity Hidden Markov Models for orthology inference.</p>
-<p>If you found OrthoHMM useful, please cite <em>MANUSCRIPT TITLE</em>. Steenwyk et al. 2020, JOURNAL. doi: <a class="reference external" href="https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3001007">10.1371/journal.pbio.3001007</a>.</p>
+<p>If you found OrthoHMM useful, please cite <em>OrthoHMM: Improved Inference of Ortholog Groups using Hidden Markov Models</em>. Steenwyk et al. 2024, bioRxiv. doi: <a class="reference external" href="https://www.biorxiv.org/content/10.1101/2024.12.07.627370v1">10.1101/2024.12.07.627370</a>.</p>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
diff --git a/searchindex.js b/searchindex.js
index e19826a..3c089b4 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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