diff --git a/_sources/change_log/index.rst.txt b/_sources/change_log/index.rst.txt
index 6c892b93..3cb29487 100644
--- a/_sources/change_log/index.rst.txt
+++ b/_sources/change_log/index.rst.txt
@@ -9,4 +9,7 @@ Change log
Major changes to OrthoSNAP are summarized here.
**0.1.0**
-Added -r/\-\-rooted, -st/\-\-snap_trees, and -ip/\-\-inparalog_to_keep functions
\ No newline at end of file
+Added -r/\-\-rooted, -st/\-\-snap_trees, and -ip/\-\-inparalog_to_keep functions
+
+**1.0.0**
+Improved species inparalog pruning
diff --git a/_sources/index.rst.txt b/_sources/index.rst.txt
index 8268f4bd..439ae7f8 100644
--- a/_sources/index.rst.txt
+++ b/_sources/index.rst.txt
@@ -10,10 +10,10 @@ can then be used for diverse studies including phylogenomics and genome-wide sur
selection.
If you found OrthoSNAP useful, please cite *OrthoSNAP: a tree splitting and pruning algorithm
-for retrieving single-copy orthologs from gene family trees*. bioRxiv. doi: |doiLink|_.
+for retrieving single-copy orthologs from gene family trees*. PLOS Biology. doi: |doiLink|_.
-.. _doiLink: https://www.biorxiv.org/content/10.1101/2021.10.30.466607v1
-.. |doiLink| replace:: 10.1101/2021.10.30.466607
+.. _doiLink: https://jlsteenwyk.com/publication_pdfs/2022_Steenwyk_etal_PLoS_Biology.pdf
+.. |doiLink| replace:: 10.1371/journal.pbio.3001827
|
diff --git a/change_log/index.html b/change_log/index.html
index b4853228..a43dd142 100644
--- a/change_log/index.html
+++ b/change_log/index.html
@@ -162,6 +162,8 @@
Major changes to OrthoSNAP are summarized here.
0.1.0
Added -r/--rooted, -st/--snap_trees, and -ip/--inparalog_to_keep functions
+1.0.0
+Improved species inparalog pruning
diff --git a/index.html b/index.html
index 9f1f9a09..270ebee4 100644
--- a/index.html
+++ b/index.html
@@ -161,7 +161,7 @@
can then be used for diverse studies including phylogenomics and genome-wide surveys of positive
selection.
If you found OrthoSNAP useful, please cite OrthoSNAP: a tree splitting and pruning algorithm
-for retrieving single-copy orthologs from gene family trees. bioRxiv. doi: 10.1101/2021.10.30.466607.
+for retrieving single-copy orthologs from gene family trees. PLOS Biology. doi: 10.1371/journal.pbio.3001827.
diff --git a/searchindex.js b/searchindex.js
index 3eb4d8f8..2275ef20 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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