diff --git a/20230603_114709.jpg b/20230603_114709.jpg new file mode 100644 index 0000000..29f58f6 Binary files /dev/null and b/20230603_114709.jpg differ diff --git a/20230623_152114.jpg b/20230623_152114.jpg new file mode 100644 index 0000000..c3e00ad Binary files /dev/null and b/20230623_152114.jpg differ diff --git a/20240602_155712.jpg b/20240602_155712.jpg new file mode 100644 index 0000000..817ec60 Binary files /dev/null and b/20240602_155712.jpg differ diff --git a/index.css b/index.css new file mode 100644 index 0000000..a8abb78 --- /dev/null +++ b/index.css @@ -0,0 +1,4 @@ +body { + background: url('20240602_155712.jpg') no-repeat center center fixed; + background-size: cover; /* Stretches the image to cover the entire background */ +} diff --git a/index.html b/index.html index 572888c..8bbbfe3 100644 --- a/index.html +++ b/index.html @@ -1,32 +1,66 @@ -

Jaromir Sant

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Hello! I'm Posdoctoral Research Associate at the University of Oxford working within Pier Francesco Palamara's group. I am primarily interested in stochastic processes arising within the field of mathematical population genetics, and how fields such as probability theory, statistical computation and Bayesian analysis can be combined to provide powerful inferential methods and techniques to answer pertinent questions within genetics. Previously I was a Research Fellow at the University of Warwick, where I also completed my PhD in December 2021 under the supervision of Paul Jenkins, Jere Koskela and Dario Spanò. I previously studied at Cambridge (Part III) and the University of Malta (BSc).

+ + + + Jaromir Sant + + + -

Email: jaromir.sant@stats.ox.ac.uk

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Jaromir Sant

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Hello!

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I'm a posdoct at the Dipartimento di Scienze Economico-Sociali e Matematico-Statistiche (ESOMAS) + at the Università di Torino, working with Prof. Matteo + Ruggiero. I am also affiliated to the Collegio + Carlo Alberto + as part of the "de Castro" Statistics Initiative.

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My main research interests revolve around stochastic processes arising within the field of + mathematical population genetics, and how techniques from probability theory, statistical + computation and Bayesian analysis can be combined to provide powerful inferential methods to + answer pertinent questions within genetics.

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Publications

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P. A. Jenkins, J. Koskela, J. Sant, D. Spanò, I. Valentić (2023). Excursion theory for the Wright–Fisher diffusion.
-[arxiv]

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About Me

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Previously, I was a Posdoctoral Research Associate at the University of Oxford working within Pier Francesco Palamara's group. Prior to that + I was a + Research Fellow at the University of Warwick, where I also completed my PhD in December 2021 + under the supervision of Paul Jenkins, Jere Koskela and Dario Spanò. I previously studied + at Cambridge (Part III) and the University of Malta (BSc). -

A. Ignatieva, M. Favero*, J. Koskela*, J. Sant*, S. R. Myers (2023). The distribution of branch duration and detection of inversions in ancestral recombination graphs.
-[bioarxiv]

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In the summer of 2022 I was one of the organisers of the Stochastic modelling in the + life sciences Junior Trimester Programme held at the Hausdorff Research Institute + for Mathematics (University of Bonn).

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J. Sant, P. A. Jenkins, J. Koskela, D. Spanò (2023). EWF: simulating exact paths of the Wright–Fisher diffusion. Bioinformatics, 39(1): btad017
-[Abstract & pdf][arxiv][Github]

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J. Sant, P. A. Jenkins, J. Koskela, D. Spanò (2022). Convergence of likelihood ratios and estimators for selection in nonneutral Wright–Fisher diffusions. Scandinavian Journal of Statistics, 49 (4): 1728-1760.
-[Abstract & pdf][arxiv]

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Contact

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I can be reached via email on the following address: jaromir.sant@gmail.com

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+ Jaromir Sant +
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Software

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I am also keen on developing and making available reproducible and portable software:

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EWF - exact diffusion and diffusion bridge simulation for the Wright--Fisher diffusion

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In the summer of 2022 I was one of the organisers of the Stochastic modelling in the life sciences Junior Trimester Programme held at the Hausdorff Research Institute for Mathematics (University of Bonn).

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I am a Research Associate at Corpus Christi College, Oxford, and a member of the Senior Common Room.

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Jaromir Sant

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Publications

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    +

    P. A. Jenkins, J. Koskela, J. Sant, D. Spanò, I. Valentić (2023). Excursion theory for the Wright–Fisher diffusion. [arxiv]

    + +

    A. Ignatieva, M. Favero*, J. Koskela*, J. Sant*, S. R. Myers (2023). The length of haplotype blocks and signals of structural variation in reconstructed genealogies. [bioarxiv]

    + +

    J. Sant, P. A. Jenkins, J. Koskela, D. Spanò (2023). EWF: simulating exact paths of the Wright–Fisher diffusion. Bioinformatics, 39(1): btad017 +[Abstract & pdf][arxiv][Github]

    + +

    J. Sant, P. A. Jenkins, J. Koskela, D. Spanò (2022). Convergence of likelihood ratios and estimators for selection in nonneutral Wright–Fisher diffusions. Scandinavian Journal of Statistics, 49 (4): 1728-1760. [Abstract & pdf][arxiv]

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+ + + diff --git a/software.css b/software.css new file mode 100644 index 0000000..0e9b97b --- /dev/null +++ b/software.css @@ -0,0 +1,4 @@ +body { + background: url('20230603_114709.jpg') no-repeat center center fixed; + background-size: cover; /* Stretches the image to cover the entire background */ +} diff --git a/software.html b/software.html new file mode 100644 index 0000000..f0a1e7d --- /dev/null +++ b/software.html @@ -0,0 +1,39 @@ + + + + + + + Software - Jaromir Sant + + + + + +
+

Jaromir Sant

+
+
+ +
+
+

Software

+

I am also keen on developing and making available reproducible and portable software.

+
    +
  • EWF - exact diffusion and diffusion bridge + simulation for the Wright–Fisher diffusion
    • + +
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I have also been involved in the development of the ARG-Needle codebase, extending the + framework to allow for ancient DNA.

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+ + + \ No newline at end of file diff --git a/style.css b/style.css new file mode 100644 index 0000000..395ffe0 --- /dev/null +++ b/style.css @@ -0,0 +1,121 @@ +body { + font-family: Arial, sans-serif; + line-height: 1.6; + margin: 0; + padding: 0; + /*background: url("20240602_155712.jpg"); + background-size: cover; /* Stretches the image to cover the entire background */ + color: #333; + position: relative; +} + +body::before { + content: ''; + position: fixed; + top: 0; + left: 0; + width: 100%; + height: 100%; + background: rgba(255, 255, 255, 0.5); /* White overlay to make the background faint */ + z-index: -1; +} + +header { + background: #4b6b47; /* Dark green */ + color: #fff; + padding: 10px 0; + text-align: center; + position: fixed; + top: 0; + width: 100%; + z-index: 1000; + height: 50px; + display: flex; + align-items: center; + justify-content: center; +} + +header h1 { + margin: 0; + font-size: 24px; + font-family: 'Georgia', serif; +} + +.container { + display: flex; + margin-top: 50px; +} + +nav { + background: #ddd; /* Light grey */ + color: #333; + padding: 20px; + width: 200px; + height: calc(100vh - 50px); + position: fixed; + top: 50px; + left: 0; + border-right: 2px solid #4b6b47; /* Dark green */ + box-shadow: 2px 0 5px rgba(0, 0, 0, 0.1); + text-align: center; +} + +nav a { + color: #4b6b47; /* Dark green */ + text-decoration: none; + text-transform: uppercase; + font-size: 16px; + font-family: 'Georgia', serif; /* Match header font */ + display: block; + margin: 10px 0; + text-align: center; +} + +nav a:not(:first-child) { + margin-top: 0.5cm; +} + +main { + margin-left: 220px; + padding: 20px; + display: flex; + justify-content: space-between; +} + +.content { + flex: 1; + max-width: calc(100% - 12cm); /* Reserve space for the photo */ +} + +section { + padding: 20px; + margin: 20px 0; + background: #e0e0e0; /* Slightly darker grey */ + border-radius: 8px; + box-shadow: 0 0 10px rgba(0, 0, 0, 0.1); + margin-left: 1cm; /* Add space to the left */ +} + +section h2 { + color: #4b6b47; /* Dark green */ + font-family: 'Georgia', serif; + margin-top: 0; +} + +section p { + font-family: 'Arial', sans-serif; +} + +.photo-container { + width: 10cm; + display: flex; + align-items: flex-start; + margin-top: 20px; +} + +.photo-container img { + width: 100%; + height: auto; + border-radius: 8px; + box-shadow: 0 0 10px rgba(0, 0, 0, 0.1); +}