From f353227217edadad407cf15a86dd15841a829043 Mon Sep 17 00:00:00 2001
From: JeeH-K <jeehyeong91@gmail.com>
Date: Wed, 15 May 2024 19:15:08 +0200
Subject: [PATCH] fixing error in postprocessing

---
 pages/FileUpload.py | 2 +-
 src/Workflow.py     | 6 ++++--
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/pages/FileUpload.py b/pages/FileUpload.py
index 2549a806..2a5443eb 100644
--- a/pages/FileUpload.py
+++ b/pages/FileUpload.py
@@ -168,7 +168,7 @@ def showUploadedFilesTable() -> bool:
 def postprocessingAfterUpload_FD(uploaded_files: list) -> None:
     initializeWorkspace(input_file_types, parsed_df_types)
     handleInputFiles(uploaded_files)
-    parseUploadedFiles(reparse=True)
+    parseUploadedFiles()
     showUploadedFilesTable()
 
 
diff --git a/src/Workflow.py b/src/Workflow.py
index f1be25d2..64bfe69a 100644
--- a/src/Workflow.py
+++ b/src/Workflow.py
@@ -7,6 +7,7 @@
 from os.path import join, splitext, basename, exists, dirname
 from os import makedirs
 from shutil import copyfile, rmtree
+from pathlib import Path
 
 class Workflow(WorkflowManager):
     # Setup pages for upload, parameter, execution and results.
@@ -357,14 +358,15 @@ def pp(self) -> None:
             out_anno = join(base_path, 'anno-mzMLs', f'{current_base}_{current_time}_annotated.mzML')
             out_deconv = join(base_path, 'deconv-mzMLs', f'{current_base}_{current_time}_deconv.mzML')
 
-            #uploaded_files.append(out_db)
             uploaded_files.append(out_anno)
             uploaded_files.append(out_deconv)
 
+            st.session_state['deconv-mzMLs'].append(Path(out_deconv).name)
+            st.session_state['anno-mzMLs'].append(Path(out_anno).name)
+
         # make directory to store deconv and anno mzML files & initialize data storage
         postprocessingAfterUpload_FD(uploaded_files)
 
-
     def execution(self) -> None:
         # Get mzML input files from self.params.
         # Can be done without file manager, however, it ensures everything is correct.