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[10 Aug 2023 16:01:34] Session /Users/Oleg.Shpynov/data/2023_GSE26320/2023_gse26320_hg38_k36me3_Nhek_rep2.yaml loaded 2023-08-10 16:01:52.313 java[27792:14695709] +[CATransaction synchronize] called within transaction [10 Aug 2023 16:02:07] DEBUG ProgressDialog Init progress log appender [10 Aug 2023 16:02:07] [1/2] Loading file:/Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_minus_ENCFF602ENH.bigWig as BIGWIG [10 Aug 2023 16:02:07] DEBUG TrackViewLoader [1/2] Loading file:/Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_minus_ENCFF602ENH.bigWig as BIGWIG { } [10 Aug 2023 16:02:07] [2/2] Loading file:/Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_plus_ENCFF506SFB.bigWig as BIGWIG [10 Aug 2023 16:02:07] DEBUG TrackViewLoader [2/2] Loading file:/Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_plus_ENCFF506SFB.bigWig as BIGWIG { } [10 Aug 2023 16:02:07] 'Loading files': Preprocessing 2 tracks [10 Aug 2023 16:02:07] Preprocessing: 50% (1/2), Elapsed time: 5 ms [10 Aug 2023 16:02:07] Preprocessing: 100% (2/2), Elapsed time: 6 ms, Throughput: 3 ms/item, ETA: 0 ns [done] [10 Aug 2023 16:02:07] DEBUG ProgressDialog Detach progress log appender 2023-08-10 16:02:20.989 java[27792:14695709] +[CATransaction synchronize] called within transaction [10 Aug 2023 16:02:48] DEBUG ProgressDialog Init progress log appender [10 Aug 2023 16:02:48] 'Adding arithmetic tracks': Preprocessing 1 tracks [10 Aug 2023 16:02:48] DEBUG PathExtensions NHEK_rep2_hg38_ENCFF602ENH.bigWig [Sum]: File is missing: /Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_ENCFF602ENH.bigWig.bw [10 Aug 2023 16:02:48] NHEK_rep2_hg38_ENCFF602ENH.bigWig [Sum]: processing /Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_ENCFF602ENH.bigWig.bw... [10 Aug 2023 16:02:48] NHEK_rep2_hg38_ENCFF602ENH.bigWig [Sum]: [sum] load bigwig data: 0% (1/910), Elapsed time: 21 ms [10 Aug 2023 16:02:48] NHEK_rep2_hg38_ENCFF602ENH.bigWig [Sum]: [sum] calc values: 0% (1/455), Elapsed time: 22 ms [10 Aug 2023 16:02:49] NHEK_rep2_hg38_ENCFF602ENH.bigWig [Sum]: [sum] calc values: 100% (455/455), Elapsed time: 81 ms, Throughput: 5 items/ms, ETA: 0 ns [done] [10 Aug 2023 16:02:49] NHEK_rep2_hg38_ENCFF602ENH.bigWig [Sum]: [sum] load bigwig data: 100% (910/910), Elapsed time: 80 ms, Throughput: 88 μs/item, ETA: 0 ns [done] [10 Aug 2023 16:02:49] ERROR PathExtensions NHEK_rep2_hg38_ENCFF602ENH.bigWig [Sum]: processing /Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_ENCFF602ENH.bigWig.bw: [FAILED] after 86.24 ms Caused by: ERROR IllegalStateException java.lang.IllegalStateException: Files '/Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_minus_ENCFF602ENH.bigWig' and '/Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_plus_ENCFF506SFB.bigWig' expected to have same. BedGraph structure, but it isn't true for chromosome: hg38:chr9_KI270720v1_random java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:77) java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:499) java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:480) java.base/java.util.concurrent.ForkJoinTask.getThrowableException(ForkJoinTask.java:562) java.base/java.util.concurrent.ForkJoinTask.reportException(ForkJoinTask.java:591) java.base/java.util.concurrent.ForkJoinTask.invoke(ForkJoinTask.java:689) java.base/java.util.stream.ReduceOps$ReduceOp.evaluateParallel(ReduceOps.java:927) java.base/java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:233) java.base/java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:682) org.jetbrains.bio.browser.tracks.arithmetics.ArithmeticTrackView$createBigWigArithmeticTrack$2.invoke(ArithmeticTrackView.kt:212) org.jetbrains.bio.browser.tracks.arithmetics.ArithmeticTrackView$createBigWigArithmeticTrack$2.invoke(ArithmeticTrackView.kt:192) org.jetbrains.bio.util.PathExtensionsKt$checkOrRecalculate$1$1$block$1.invoke(PathExtensions.kt:348) org.jetbrains.bio.util.PathExtensionsKt$checkOrRecalculate$1$1$block$1.invoke(PathExtensions.kt:347) org.jetbrains.bio.util.PathExtensionsKt$checkOrRecalculate$1$1.invoke(PathExtensions.kt:490) org.jetbrains.bio.util.PathExtensionsKt$checkOrRecalculate$1$1.invoke(PathExtensions.kt:345) org.jetbrains.bio.util.LoggerExtensionsKt.time(LoggerExtensions.kt:20) org.jetbrains.bio.util.PathExtensionsKt.checkOrRecalculate(PathExtensions.kt:345) org.jetbrains.bio.util.PathExtensionsKt.checkOrRecalculate$default(PathExtensions.kt:320) org.jetbrains.bio.browser.tracks.arithmetics.ArithmeticTrackView.createBigWigArithmeticTrack(ArithmeticTrackView.kt:192) org.jetbrains.bio.browser.tracks.arithmetics.ArithmeticTrackView$newTrack$2.preprocessSrc(ArithmeticTrackView.kt:279) org.jetbrains.bio.browser.tracks.big.BigWigTrackView.preprocess(BigWigTrackView.kt:141) org.jetbrains.bio.browser.GenomeBrowser$preprocess$2.invoke(GenomeBrowser.kt:279) org.jetbrains.bio.browser.GenomeBrowser$preprocess$2.invoke(GenomeBrowser.kt:277) org.jetbrains.bio.util.LoggerExtensionsKt.time(LoggerExtensions.kt:20) org.jetbrains.bio.browser.GenomeBrowser.preprocess(GenomeBrowser.kt:277) org.jetbrains.bio.browser.GenomeBrowser.access$preprocess(GenomeBrowser.kt:32) org.jetbrains.bio.browser.GenomeBrowser$preprocess$asTasks$1.invoke$lambda-1$lambda-0(GenomeBrowser.kt:232) org.jetbrains.bio.browser.GenomeBrowser.preprocess(GenomeBrowser.kt:268) org.jetbrains.bio.browser.desktop.DesktopGenomeBrowser$addAndProcessNewTracks$1.invoke(DesktopGenomeBrowser.kt:351) org.jetbrains.bio.browser.desktop.DesktopGenomeBrowser$addAndProcessNewTracks$1.invoke(DesktopGenomeBrowser.kt:347) org.jetbrains.bio.browser.desktop.dialogs.ProgressDialog$display$block$1.invoke$lambda-1(ProgressDialog.kt:173) java.base/java.lang.Thread.run(Thread.java:833) [10 Aug 2023 16:02:49] ERROR GenomeBrowser Failed to preprocess track NHEK_rep2_hg38_ENCFF602ENH.bigWig [Sum] Caused by: ERROR IllegalStateException java.lang.IllegalStateException: Files '/Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_minus_ENCFF602ENH.bigWig' and '/Users/Oleg.Shpynov/data/2023_GSE26320_rnaseq/NHEK_rep2_hg38_plus_ENCFF506SFB.bigWig' expected to have same. BedGraph structure, but it isn't true for chromosome: hg38:chr9_KI270720v1_random java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:77) java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:499) java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:480) java.base/java.util.concurrent.ForkJoinTask.getThrowableException(ForkJoinTask.java:562) java.base/java.util.concurrent.ForkJoinTask.reportException(ForkJoinTask.java:591) java.base/java.util.concurrent.ForkJoinTask.invoke(ForkJoinTask.java:689) java.base/java.util.stream.ReduceOps$ReduceOp.evaluateParallel(ReduceOps.java:927) java.base/java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:233) java.base/java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:682) org.jetbrains.bio.browser.tracks.arithmetics.ArithmeticTrackView$createBigWigArithmeticTrack$2.invoke(ArithmeticTrackView.kt:212) org.jetbrains.bio.browser.tracks.arithmetics.ArithmeticTrackView$createBigWigArithmeticTrack$2.invoke(ArithmeticTrackView.kt:192) org.jetbrains.bio.util.PathExtensionsKt$checkOrRecalculate$1$1$block$1.invoke(PathExtensions.kt:348) org.jetbrains.bio.util.PathExtensionsKt$checkOrRecalculate$1$1$block$1.invoke(PathExtensions.kt:347) org.jetbrains.bio.util.PathExtensionsKt$checkOrRecalculate$1$1.invoke(PathExtensions.kt:490) org.jetbrains.bio.util.PathExtensionsKt$checkOrRecalculate$1$1.invoke(PathExtensions.kt:345) org.jetbrains.bio.util.LoggerExtensionsKt.time(LoggerExtensions.kt:20) org.jetbrains.bio.util.PathExtensionsKt.checkOrRecalculate(PathExtensions.kt:345) org.jetbrains.bio.util.PathExtensionsKt.checkOrRecalculate$default(PathExtensions.kt:320) org.jetbrains.bio.browser.tracks.arithmetics.ArithmeticTrackView.createBigWigArithmeticTrack(ArithmeticTrackView.kt:192) org.jetbrains.bio.browser.tracks.arithmetics.ArithmeticTrackView$newTrack$2.preprocessSrc(ArithmeticTrackView.kt:279) org.jetbrains.bio.browser.tracks.big.BigWigTrackView.preprocess(BigWigTrackView.kt:141) org.jetbrains.bio.browser.GenomeBrowser$preprocess$2.invoke(GenomeBrowser.kt:279) org.jetbrains.bio.browser.GenomeBrowser$preprocess$2.invoke(GenomeBrowser.kt:277) org.jetbrains.bio.util.LoggerExtensionsKt.time(LoggerExtensions.kt:20) org.jetbrains.bio.browser.GenomeBrowser.preprocess(GenomeBrowser.kt:277) org.jetbrains.bio.browser.GenomeBrowser.access$preprocess(GenomeBrowser.kt:32) org.jetbrains.bio.browser.GenomeBrowser$preprocess$asTasks$1.invoke$lambda-1$lambda-0(GenomeBrowser.kt:232) org.jetbrains.bio.browser.GenomeBrowser.preprocess(GenomeBrowser.kt:268) org.jetbrains.bio.browser.desktop.DesktopGenomeBrowser$addAndProcessNewTracks$1.invoke(DesktopGenomeBrowser.kt:351) org.jetbrains.bio.browser.desktop.DesktopGenomeBrowser$addAndProcessNewTracks$1.invoke(DesktopGenomeBrowser.kt:347) org.jetbrains.bio.browser.desktop.dialogs.ProgressDialog$display$block$1.invoke$lambda-1(ProgressDialog.kt:173) java.base/java.lang.Thread.run(Thread.java:833) [10 Aug 2023 16:02:49] Preprocessing: 100% (1/1), Elapsed time: 139 ms [done] [10 Aug 2023 16:02:49] DEBUG ProgressDialog Detach progress log appender
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Important to check option 'Input tracks are BedGraph based *.bw tracks with same intervals structure'!
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