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JBR Genome Browser Documentation

Coming soon...

About

JBR Genome Browser is a general purpose genome browser with integrated visual peak calling support.

Installation

See Installation section at JBR home page.

Basic Features

Main browser window parts are:

• Information about current genome range and chromosome
• Actions tool bar
• Tracks panel

Browser Sessions

New Session

Open Existing Session

• local
• from URL

Save Session

Open Files

• supported files
• open files + windows file type mask notes
• open from URL
• recommended formats BigWig, BigBed, BED-like

Go to Location

• chr location
• gene
• auto-completion

Navigation

• Zoom In/Out
• Zoom to Selection
• Scroll Left
• Scroll Right
• Move pointer

Track Options

• rename
• change color
• change height
• auto scale
• scale max, min
• Remove
• About
• Show source file

BED-like tracks

• region color
• region label
• region score column
• score as transparency label

BIGWIG tracks

• Scale - log, ..

Genes Track View

Advanced Features

Span Tuning

• annotations
• tune (menu, context menu)
• save (menu, context menu)
• annotate tutorial

Score filtering

'bed tuning'

Tracks Overlap