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Roman Chernyatchik edited this page Dec 17, 2018 · 19 revisions

JBR Genome Browser Documentation

Coming soon...

About

JBR Genome Browser is a general purpose genome browser with integrated semi-supervised peak calling support using SPAN. The browser is optimized to work with large session containing BigWig and BigBed tracks.

Installation

See Installation section at JBR home page.

Basic Features

JBR Main Window Example: alt text

Main browser window areas are:

  • Information about current genome range and chromosome
  • Actions toolbar
  • Tracks panel

alt text

Information about current genome range and chromosome:

alt text

Browser Sessions

This section shows how to create new sessions, save them and load existing ones.

Load Tracks

This section shows how to load tracks of different types into JBR.

Open Genome Location

This section shows how to open desired genome location or gene.

Navigation

This section shows how to scroll, zoom genome data and select regions.

Track Options

This section shows basic tracks operations available in context menu and how to reorder tracks.

Genes Track View

Advanced Features

Span Tuning

Score Filtering

Tracks Overlap

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