Files

 master

/

src

/

Copy path

Directory actions

More options

Directory actions

More options

Latest commit

che85

ENH: Update VTKMeshHalfEdgeWrapper to work with VTK9

Feb 23, 2022

b6a509d · Feb 23, 2022

History

History

This branch is 1 commit ahead of, 87 commits behind pyushkevich/cmrep:master.

/

src

/

Top

Folders and files

Name		Name	Last commit message	Last commit date
parent directory ..
dijkstra		dijkstra	ENH: Update VTKMeshHalfEdgeWrapper to work with VTK9	Feb 23, 2022
util		util	fixed crash in meshdiff	Dec 3, 2021
AffineTransformDescriptor.h		AffineTransformDescriptor.h	Added a term for iterative closest point computation.	May 29, 2014
BasisFunctions2D.cxx		BasisFunctions2D.cxx	Initial checkin	Apr 3, 2008
BasisFunctions2D.h		BasisFunctions2D.h	Bug fixes and TAUCS support	Dec 1, 2009
BasisFunctions2D.txx		BasisFunctions2D.txx	Minor compilation support changes	Jan 7, 2009
BranchingSubdivisionSurface.cxx		BranchingSubdivisionSurface.cxx	Initial checkin of geodesic shooting code, works quite well	Nov 22, 2016
BranchingSubdivisionSurface.h		BranchingSubdivisionSurface.h	Minor compilation support changes	Jan 7, 2009
BruteForceSubdivisionMedialModel.cxx		BruteForceSubdivisionMedialModel.cxx	Got to compile with PARDISO 5 and GCC 4.7	Apr 30, 2015
BruteForceSubdivisionMedialModel.h		BruteForceSubdivisionMedialModel.h	Made changes to the affine parameter mapping, to better take care of …	Aug 29, 2011
CMRepMeanModel.cxx		CMRepMeanModel.cxx	some warning fixes	Jun 4, 2011
CMRepMeshToImage.cxx		CMRepMeshToImage.cxx	Initial checkin of geodesic shooting code, works quite well	Nov 22, 2016
CMRepRemesh.cxx		CMRepRemesh.cxx	cleaned up the code on unix	Apr 24, 2008
CMRepSubdivide.cxx		CMRepSubdivide.cxx	some warning fixes	Jun 4, 2011
CMRepToAffineTransform.cxx		CMRepToAffineTransform.cxx	Bug fixes and TAUCS support	Dec 1, 2009
CMRepToMesh.cxx		CMRepToMesh.cxx	cleaned up the code on unix	Apr 24, 2008
CMRepToWarp.cxx		CMRepToWarp.cxx	Initial checkin of geodesic shooting code, works quite well	Nov 22, 2016
CMRepWarpImage.cxx		CMRepWarpImage.cxx	Initial checkin of geodesic shooting code, works quite well	Nov 22, 2016
CartesianGridMedialIterationContext.h		CartesianGridMedialIterationContext.h	Changed subdivision surface PDE code to use biharmonic PDE	Jul 4, 2008
CartesianMedialAtomGrid.cxx		CartesianMedialAtomGrid.cxx	Initial checkin	Apr 3, 2008
CartesianMedialAtomGrid.h		CartesianMedialAtomGrid.h	Initial checkin	Apr 3, 2008
CartesianMedialModel.cxx		CartesianMedialModel.cxx	Got to compile with ITK5	Apr 15, 2021
CartesianMedialModel.h		CartesianMedialModel.h	Bug fixes and TAUCS support	Dec 1, 2009
CoarseToFineMappingDescriptor.h		CoarseToFineMappingDescriptor.h	some warning fixes	Jun 4, 2011
CodeTimer.h		CodeTimer.h	Initial checkin	Apr 3, 2008
CoefficientMapping.cxx		CoefficientMapping.cxx	Bug fixes and TAUCS support	Dec 1, 2009
CoefficientMapping.h		CoefficientMapping.h	Made changes to the affine parameter mapping, to better take care of …	Aug 29, 2011
CoefficientMask.cxx		CoefficientMask.cxx	Initial checkin	Apr 3, 2008
CoefficientMask.h		CoefficientMask.h	Initial checkin	Apr 3, 2008
ComputePCA.cxx		ComputePCA.cxx	some warning fixes	Jun 4, 2011
ConstrainedCMRepObjectives.cxx		ConstrainedCMRepObjectives.cxx	Migrated to VTK 6.0	Mar 12, 2015
ConstrainedCMRepObjectives.h		ConstrainedCMRepObjectives.h	fixing cmrep-vskel and other fixes I forgot to check in	Jul 31, 2013
ConstrainedCMRepTest.cxx		ConstrainedCMRepTest.cxx	fixed bug with cmrep import in contest	Dec 20, 2019
ConstrainedOptimization.cxx		ConstrainedOptimization.cxx	Initial checkin	Apr 3, 2008
DiffeomorphicEnergyTerm.cxx		DiffeomorphicEnergyTerm.cxx	Bug fixes and TAUCS support	Dec 1, 2009
DiffeomorphicEnergyTerm.h		DiffeomorphicEnergyTerm.h	Bug fixes and TAUCS support	Dec 1, 2009
EigenSolverInterface.cxx		EigenSolverInterface.cxx	Enabled use of MKL through Eigen	Apr 21, 2021
EigenSolverInterface.h		EigenSolverInterface.h	Enabled use of MKL through Eigen	Apr 21, 2021
FastLinearInterpolator.h		FastLinearInterpolator.h	Added image sampling and model/image Dice computation. Derivatives ar…	Aug 22, 2018
Fit.cxx		Fit.cxx	Migrated to VTK 6.0	Mar 12, 2015
GenericMedialModel.h		GenericMedialModel.h	Bug fixes and TAUCS support	Dec 1, 2009
GentleNLP.cxx		GentleNLP.cxx	Added rigid/similarity mode to ml_affine	Nov 18, 2021
GentleNLP.h		GentleNLP.h	Added rigid/similarity mode to ml_affine	Nov 18, 2021
GeodesicShootingNLPInterface.cxx		GeodesicShootingNLPInterface.cxx	Working changes to bcmrep, intermediate, not ready	Dec 4, 2017
GeometryDescriptor.cxx		GeometryDescriptor.cxx	Initial checkin	Apr 3, 2008
GeometryDescriptor.h		GeometryDescriptor.h	Initial checkin	Apr 3, 2008
IPOptProblemInterface.cxx		IPOptProblemInterface.cxx	reorgnized triangle shape constraints and added medial versions thereof	Nov 9, 2017
IPOptProblemInterface.h		IPOptProblemInterface.h	reorgnized triangle shape constraints and added medial versions thereof	Nov 9, 2017
IPOptTest.cxx		IPOptTest.cxx	Added export of spoke arrays	Aug 8, 2013
ITKImageWrapper.cxx		ITKImageWrapper.cxx	some warning fixes	Jun 4, 2011
ITKImageWrapper.h		ITKImageWrapper.h	Added oriented image support, with RAS physical space	Sep 23, 2008
JacobianDistortionPenaltyTerm.cxx		JacobianDistortionPenaltyTerm.cxx	cleaned up the code on unix	Apr 24, 2008
JacobianDistortionPenaltyTerm.h		JacobianDistortionPenaltyTerm.h	cleaned up the code on unix	Apr 24, 2008
MKLSolverInterface.cxx		MKLSolverInterface.cxx	small compile fix	Dec 4, 2018
MKLSolverInterface.h		MKLSolverInterface.h	Added MKL support	Jul 6, 2010
MedialAtom.cxx		MedialAtom.cxx	Fixed bug with complaints about non-positive tau	Jun 11, 2011
MedialAtom.h		MedialAtom.h	Fixed problem with negative tau being allowed; augm. GradR term to pe…	Jun 11, 2011
MedialAtomGrid.cxx		MedialAtomGrid.cxx	some warning fixes	Jun 4, 2011
MedialAtomGrid.h		MedialAtomGrid.h	Bug fixes and TAUCS support	Dec 1, 2009
MedialAtomIterators.h		MedialAtomIterators.h	ipopt-based cm-rep seems to be finally working, QCQP	Dec 7, 2012
MedialException.h		MedialException.h	Initial checkin	Apr 3, 2008
MedialIterationContext.h		MedialIterationContext.h	Bug fixes and TAUCS support	Dec 1, 2009
MedialModelIO.cxx		MedialModelIO.cxx	Migrated to VTK 6.0	Mar 12, 2015
MedialModelIO.h		MedialModelIO.h	Initial checkin	Apr 3, 2008
MedialPDEMasks.cxx		MedialPDEMasks.cxx	some warning fixes	Jun 4, 2011
MedialPDEMasks.h		MedialPDEMasks.h	Initial checkin	Apr 3, 2008
MedialPDERenderer.cxx		MedialPDERenderer.cxx	Initial checkin	Apr 3, 2008
MedialPDERenderer.h		MedialPDERenderer.h	Initial checkin	Apr 3, 2008
MedialPDESites.cxx		MedialPDESites.cxx	some warning fixes	Jun 4, 2011
MedialPDESites.h		MedialPDESites.h	Bug fixes and TAUCS support	Dec 1, 2009
MedialPDESolver.cxx		MedialPDESolver.cxx	Bug fixes and TAUCS support	Dec 1, 2009
MedialPDESolver.h		MedialPDESolver.h	Bug fixes and TAUCS support	Dec 1, 2009
MedialPDETest.cxx		MedialPDETest.cxx	Initial checkin	Apr 3, 2008
MeshMedialPDESolver.cxx		MeshMedialPDESolver.cxx	Got to compile with ITK5	Apr 15, 2021
MeshMedialPDESolver.h		MeshMedialPDESolver.h	Bug fixes and TAUCS support	Dec 1, 2009
MeshTraversal.cxx		MeshTraversal.cxx	compiler fix	Apr 15, 2021
MeshTraversal.h		MeshTraversal.h	Added support for labeled triangles; Added Dockerfile for automated D…	Dec 3, 2018
NonparametricSubdivisionMedialModel.h		NonparametricSubdivisionMedialModel.h	Initial checkin	Apr 3, 2008
OptimizationParameters.cxx		OptimizationParameters.cxx	Undid last stupid commit	Dec 8, 2014
OptimizationParameters.h		OptimizationParameters.h	Undid last stupid commit	Dec 8, 2014
OptimizationTerms.cxx		OptimizationTerms.cxx	Got to compile with ITK5	Apr 15, 2021
OptimizationTerms.h		OptimizationTerms.h	Added a term for iterative closest point computation.	May 29, 2014
PDESubdivisionMedialModel.cxx		PDESubdivisionMedialModel.cxx	Fixed bug with complaints about non-positive tau	Jun 11, 2011
PDESubdivisionMedialModel.h		PDESubdivisionMedialModel.h	Made changes to the affine parameter mapping, to better take care of …	Aug 29, 2011
ParameterFile.h		ParameterFile.h	Initial checkin	Apr 3, 2008
PardisoInterface.cxx		PardisoInterface.cxx	Got to compile with PARDISO 5 and GCC 4.7	Apr 30, 2015
PardisoInterface.h		PardisoInterface.h	Got to compile with PARDISO 5 and GCC 4.7	Apr 30, 2015
PointSetGeodesicFlowUtil.cxx		PointSetGeodesicFlowUtil.cxx	Added support for labeled triangles; Added Dockerfile for automated D…	Dec 3, 2018
PointSetGeodesicShooting.cxx		PointSetGeodesicShooting.cxx	Some tweaks to lmshoot, added ml_affine to cmrep tree	Nov 9, 2021
PointSetGeodesicShooting.h		PointSetGeodesicShooting.h	Initial checkin of geodesic shooting code, works quite well	Nov 22, 2016
PointSetGeodesicToWarp.cxx		PointSetGeodesicToWarp.cxx	More changes to lmshoot, not sure that changing to Eigen from BLAS wa…	Apr 15, 2021
PointSetHamiltonianSystem.cxx		PointSetHamiltonianSystem.cxx	Currents energy term seems to be working and it's quite fast too	Jul 21, 2021
PointSetHamiltonianSystem.h		PointSetHamiltonianSystem.h	Currents energy term seems to be working and it's quite fast too	Jul 21, 2021
PointSetOptimalControlSystem.cxx		PointSetOptimalControlSystem.cxx	Added option to pre-rotate input model and lots of cmake fixing	Dec 4, 2018
PointSetOptimalControlSystem.h		PointSetOptimalControlSystem.h	Added computation of limit surface	Aug 28, 2018
PrincipalComponents.cxx		PrincipalComponents.cxx	Got to compile with PARDISO 5 and GCC 4.7	Apr 30, 2015
PrincipalComponents.h		PrincipalComponents.h	Initial checkin	Apr 3, 2008
PrincipalComponentsPenaltyTerm.cxx		PrincipalComponentsPenaltyTerm.cxx	PCA penalty???	Jun 22, 2008
PrincipalComponentsPenaltyTerm.h		PrincipalComponentsPenaltyTerm.h	PCA penalty???	Jun 22, 2008
Procrustes.cxx		Procrustes.cxx	Fixed for ubuntu	Mar 12, 2010
Procrustes.h		Procrustes.h	Initial checkin	Apr 3, 2008
ProfilerDriver.cxx		ProfilerDriver.cxx	Initial checkin	Apr 3, 2008
ProgramFitBinary.cxx		ProgramFitBinary.cxx	Initial checkin	Apr 3, 2008
Registry.cxx		Registry.cxx	Initial checkin	Apr 3, 2008
Registry.h		Registry.h	Initial checkin	Apr 3, 2008
SampleImage.cxx		SampleImage.cxx	Initial checkin	Apr 3, 2008
ScriptImaging.cxx		ScriptImaging.cxx	Migrated to VTK 6.0	Mar 12, 2015
ScriptInterface.cxx		ScriptInterface.cxx	Intermediate: working on propagation with 'riding-along' points'	Aug 2, 2018
ScriptInterface.h		ScriptInterface.h	Added a term for iterative closest point computation.	May 29, 2014
ScriptTest.cxx		ScriptTest.cxx	Enabled compilation on c++11 and added warpmesh	Sep 27, 2017
SmoothedImageSampler.cxx		SmoothedImageSampler.cxx	some warning fixes	Jun 4, 2011
SmoothedImageSampler.h		SmoothedImageSampler.h	Minor compilation support changes	Jan 7, 2009
SparseMatrix.cxx		SparseMatrix.cxx	Enabled compilation on c++11 and added warpmesh	Sep 27, 2017
SparseMatrix.h		SparseMatrix.h	Implemented computation of constraints and objective using sparse mat…	Aug 17, 2018
SparseMatrix.txx		SparseMatrix.txx	Implemented computation of constraints and objective using sparse mat…	Aug 17, 2018
SparseSolver.cxx		SparseSolver.cxx	Enabled use of MKL through Eigen	Apr 21, 2021
SparseSolver.h		SparseSolver.h	Bug fixes and TAUCS support	Dec 1, 2009
SparseSystemSolver.cxx		SparseSystemSolver.cxx	Initial checkin	Apr 3, 2008
SubdivisionMedialModel.cxx		SubdivisionMedialModel.cxx	Made changes to the affine parameter mapping, to better take care of …	Aug 29, 2011
SubdivisionMedialModel.h		SubdivisionMedialModel.h	Made changes to the affine parameter mapping, to better take care of …	Aug 29, 2011
SubdivisionSurface.cxx		SubdivisionSurface.cxx	Added support for labeled triangles; Added Dockerfile for automated D…	Dec 3, 2018
SubdivisionSurface.h		SubdivisionSurface.h	Added support for labeled triangles; Added Dockerfile for automated D…	Dec 3, 2018
SubdivisionSurfaceMedialIterationContext.h		SubdivisionSurfaceMedialIterationContext.h	Commit for Hui to use	Apr 14, 2008
System.cxx		System.cxx	Got to compile with PARDISO 5 and GCC 4.7	Apr 30, 2015
System.h		System.h	added system.cxx	Jun 18, 2010
TaucsInterface.cxx		TaucsInterface.cxx	Bug fixes and TAUCS support	Dec 1, 2009
TaucsInterface.h		TaucsInterface.h	Bug fixes and TAUCS support	Dec 1, 2009
TestAugLagCMRep.cxx		TestAugLagCMRep.cxx	Fixed search/replace error and added barebone docs	Nov 21, 2019
TestGeodesicShooting.cxx		TestGeodesicShooting.cxx	Completed and tested rider forward and backward propagation and also …	Jul 16, 2021
TestSolver.cxx		TestSolver.cxx	Enabled compilation on c++11 and added warpmesh	Sep 27, 2017
TestSolver.h		TestSolver.h	Initial checkin	Apr 3, 2008
TestSubdivision.cxx		TestSubdivision.cxx	Initial checkin	Apr 3, 2008
VTKMedialMesh.cxx		VTKMedialMesh.cxx	Migrated to VTK 6.0	Mar 12, 2015
VTKMeshBuilder.cxx		VTKMeshBuilder.cxx	Added code to save and restore models, save affine transform; Also ma…	Dec 6, 2018
VTKMeshBuilder.h		VTKMeshBuilder.h	Added code to save and restore models, save affine transform; Also ma…	Dec 6, 2018
VTKSubdivision.cxx		VTKSubdivision.cxx	Migrated to VTK 6.0	Mar 12, 2015
VoronoiSkeletonTool.cxx		VoronoiSkeletonTool.cxx	Modified cmrep_vskel to use common mesh IO code	Apr 28, 2021
ctpl_stl.h		ctpl_stl.h	Added thread pool and made optimal control system multi-threaded; add…	Aug 26, 2018
exp_approx.h		exp_approx.h	Added support for labeled triangles; Added Dockerfile for automated D…	Dec 3, 2018
itkOrientedRASImage.h		itkOrientedRASImage.h	Added IPOPT interoperability	Oct 21, 2012
itk_to_nifti_xform.h		itk_to_nifti_xform.h	fixed code for target mesh generation in cmrep_fit (world coords)	Jun 3, 2011
medialpde.i		medialpde.i	Initial checkin	Apr 3, 2008
smlmath.h		smlmath.h	Initial checkin	Apr 3, 2008
View all files