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Updated BIDS convention #9

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agahkarakuzu opened this issue Dec 8, 2020 · 5 comments
Open

Updated BIDS convention #9

agahkarakuzu opened this issue Dec 8, 2020 · 5 comments

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@agahkarakuzu
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@marcelzwiers I saw that you wrote some BIDS wrappers for MP2RAGE data. Unfortunately the convention you described has undergone some changes as the extension proposal evolved.

Data would look like:

└── sub-01/
     └── anat/
         ├── sub-01_inv-1_part-mag_MP2RAGE.nii.gz
         ├── sub-01_inv-1_part-phase_MP2RAGE.nii.gz
         ├── sub-01_inv-1_MP2RAGE.json
         ├── sub-01_inv-2_part-mag_MP2RAGE.nii.gz
         ├── sub-01_inv-2_part-phase_MP2RAGE.nii.gz
         ├── sub-01_UNIT1.nii.gz
         ├── sub-01_UNIT1.json
         └── sub-01_inv-2_MP2RAGE.json

The B1+ maps are going to have suffix TB1map and going to be accessible from the derivatives folder.

@marcelzwiers
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True, I noticed that too and even started to adapt the wrappers. But I paused that because the BEP001 proposal was retracted by you :-). I am happy to update my code if you can assure me a bit that the above structure is here to stay...

@agahkarakuzu
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@marcelzwiers majority of the proposal has been merged, will be a part of the release 1.5.0, so they are here to stay :)

@marcelzwiers
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The B1+ maps are going to have suffix TB1map and going to be accessible from the derivatives folder.

Thanks, I will make the changes, but TB1map?

@agahkarakuzu
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@marcelzwiers TB1map for transmit and RB1map for receive fields.

@marcelzwiers
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I finally came to update my BIDS wrappers to BIDS v1.5 (see #10)

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