precompute notebooks

Author: lucaferranti

.github/workflows/PrecomputeNotebooks.yaml

@@ -0,0 +1,66 @@
+name: Export Pluto notebooks
+on:
+    push:
+        branches:
+            - main
+    workflow_dispatch:
+
+# When two jobs run in parallel, cancel the older ones, to make sure that the website is generated from the most recent commit.
+concurrency:
+    group: pluto-export
+    cancel-in-progress: true
+
+# This action needs permission to write the exported HTML file to the gh-pages branch.
+permissions:
+    contents: write
+    # (all other permission fields default to "none")
+
+jobs:
+    build-and-deploy:
+        runs-on: ubuntu-latest
+        steps:
+            - name: Checkout this repository
+              uses: actions/checkout@v3
+
+            - name: Install Julia
+              uses: julia-actions/setup-julia@v1
+              with:
+                  version: "1" # This will automatically pick the latest Julia version
+
+            - name: Cache Julia artifacts & such
+              uses: julia-actions/cache@v1
+              with:
+                cache-registries: "true"
+
+            # We set up a folder that Pluto can use to cache exported notebooks. If the notebook file did not change, then Pluto can take the exported file from cache instead of running the notebook.
+            - name: Set up notebook state cache
+              uses: actions/cache@v3
+              with:
+                  path: pluto_state_cache
+                  key: ${{ runner.os }}-pluto_state_cache-v2-${{ hashFiles('**/Project.toml', '**/Manifest.toml', '.github/workflows/*' ) }}-${{ hashFiles('**/*jl') }}
+                  restore-keys: |
+                      ${{ runner.os }}-pluto_state_cache-v2-${{ hashFiles('**/Project.toml', '**/Manifest.toml', '.github/workflows/*' ) }}
+
+
+            - name: Run & export Pluto notebooks
+              run: |
+                julia -e 'using Pkg
+                  Pkg.activate("pluto-deployment-environment")
+
+                  import PlutoSliderServer
+
+                  PlutoSliderServer.github_action("src";
+                    Export_output_dir="_statequest"
+                    Precompute_enabled=true,
+                    Precompute_max_filesize_per_group=2e9
+                    # more parameters can go here
+                  )'
+
+
+            - name: Deploy to gh-pages
+              uses: JamesIves/github-pages-deploy-action@releases/v4
+              with:
+                  token: ${{ secrets.GITHUB_TOKEN }}
+                  branch: precomputed-staterequests
+                  folder: "_staterequest"
+                  single-commit: true

.gitignore

@@ -1,10 +1,7 @@
 
 .DS_Store
 
-reduced_phil.png
-notebooks/week9/testCSVwrite.csv
-
 _cache
 _site
+_tmpo
 generation_report.html
-src/week9/testCSVwrite.csv

pluto-deployment-environment/Manifest.toml

@@ -58,6 +58,24 @@ git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d"
 uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
 version = "0.1.7"
 
+[[deps.Calculus]]
+deps = ["LinearAlgebra"]
+git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad"
+uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9"
+version = "0.5.1"
+
+[[deps.ChainRulesCore]]
+deps = ["Compat", "LinearAlgebra", "SparseArrays"]
+git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644"
+uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+version = "1.16.0"
+
+[[deps.ChangesOfVariables]]
+deps = ["LinearAlgebra", "Test"]
+git-tree-sha1 = "f84967c4497e0e1955f9a582c232b02847c5f589"
+uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
+version = "0.1.7"
+
 [[deps.CodeTracking]]
 deps = ["InteractiveUtils", "UUIDs"]
 git-tree-sha1 = "d730914ef30a06732bdd9f763f6cc32e92ffbff1"
@@ -126,6 +144,12 @@ git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
 version = "1.15.0"
 
+[[deps.DataStructures]]
+deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
+git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0"
+uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
+version = "0.18.13"
+
 [[deps.DataValueInterfaces]]
 git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
 uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464"
@@ -146,15 +170,39 @@ git-tree-sha1 = "cd6756e833c377e0ce9cd63fb97689a255f12323"
 uuid = "04572ae6-984a-583e-9378-9577a1c2574d"
 version = "1.33.4+0"
 
+[[deps.DensityInterface]]
+deps = ["InverseFunctions", "Test"]
+git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b"
+uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
+version = "0.4.0"
+
 [[deps.Distributed]]
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
+[[deps.Distributions]]
+deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
+git-tree-sha1 = "4ed4a6df2548a72f66e03f3a285cd1f3b573035d"
+uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
+version = "0.25.96"
+
+[[deps.DocStringExtensions]]
+deps = ["LibGit2"]
+git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
+uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
+version = "0.9.3"
+
 [[deps.Downloads]]
 deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
 uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 version = "1.6.0"
 
+[[deps.DualNumbers]]
+deps = ["Calculus", "NaNMath", "SpecialFunctions"]
+git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566"
+uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74"
+version = "0.6.8"
+
 [[deps.Expat_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d"
@@ -170,6 +218,12 @@ version = "0.7.11"
 [[deps.FileWatching]]
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
+[[deps.FillArrays]]
+deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
+git-tree-sha1 = "e17cc4dc2d0b0b568e80d937de8ed8341822de67"
+uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
+version = "1.2.0"
+
 [[deps.FixedPointNumbers]]
 deps = ["Statistics"]
 git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc"
@@ -233,6 +287,12 @@ git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
 version = "1.9.6"
 
+[[deps.HypergeometricFunctions]]
+deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
+git-tree-sha1 = "0ec02c648befc2f94156eaef13b0f38106212f3f"
+uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
+version = "0.3.17"
+
 [[deps.Hyperscript]]
 deps = ["Test"]
 git-tree-sha1 = "8d511d5b81240fc8e6802386302675bdf47737b9"
@@ -260,6 +320,17 @@ version = "0.3.1"
 deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
+[[deps.InverseFunctions]]
+deps = ["Test"]
+git-tree-sha1 = "6667aadd1cdee2c6cd068128b3d226ebc4fb0c67"
+uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
+version = "0.1.9"
+
+[[deps.IrrationalConstants]]
+git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
+uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
+version = "0.2.2"
+
 [[deps.IteratorInterfaceExtensions]]
 git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
 uuid = "82899510-4779-5014-852e-03e436cf321d"
@@ -331,6 +402,12 @@ version = "1.16.1+2"
 deps = ["Libdl", "libblastrampoline_jll"]
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
+[[deps.LogExpFunctions]]
+deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
+git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f"
+uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
+version = "0.3.24"
+
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
@@ -390,6 +467,12 @@ git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e"
 uuid = "128add7d-3638-4c79-886c-908ea0c25c34"
 version = "0.1.4"
 
+[[deps.Missings]]
+deps = ["DataAPI"]
+git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272"
+uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
+version = "1.1.0"
+
 [[deps.Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
@@ -403,6 +486,12 @@ git-tree-sha1 = "fc8c15ca848b902015bd4a745d350f02cf791c2a"
 uuid = "99f44e22-a591-53d1-9472-aa23ef4bd671"
 version = "1.2.0"
 
+[[deps.NaNMath]]
+deps = ["OpenLibm_jll"]
+git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4"
+uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
+version = "1.0.2"
+
 [[deps.NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
@@ -412,6 +501,11 @@ deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
 uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
 version = "0.3.20+0"
 
+[[deps.OpenLibm_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
+version = "0.8.1+0"
+
 [[deps.OpenSSL]]
 deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
 git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2"
@@ -424,6 +518,12 @@ git-tree-sha1 = "1aa4b74f80b01c6bc2b89992b861b5f210e665b5"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
 version = "1.1.21+0"
 
+[[deps.OpenSpecFun_jll]]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
+uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
+version = "0.5.5+0"
+
 [[deps.OrderedCollections]]
 git-tree-sha1 = "d321bf2de576bf25ec4d3e4360faca399afca282"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
@@ -434,6 +534,12 @@ deps = ["Artifacts", "Libdl"]
 uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15"
 version = "10.40.0+0"
 
+[[deps.PDMats]]
+deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
+git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1"
+uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
+version = "0.11.17"
+
 [[deps.Parsers]]
 deps = ["Dates", "PrecompileTools", "UUIDs"]
 git-tree-sha1 = "a5aef8d4a6e8d81f171b2bd4be5265b01384c74c"
@@ -464,8 +570,10 @@ uuid = "0ff47ea0-7a50-410d-8455-4348d5de0420"
 version = "0.1.6"
 
 [[deps.PlutoSliderServer]]
-deps = ["AbstractPlutoDingetjes", "Base64", "BetterFileWatching", "Configurations", "Distributed", "FromFile", "Git", "GitHubActions", "Glob", "HTTP", "JSON", "Logging", "Pkg", "Pluto", "SHA", "Sockets", "TOML", "TerminalLoggers", "UUIDs"]
-git-tree-sha1 = "2bca19d5d90959f6ffda8ec4bcfaa25ebf09b6b7"
+deps = ["AbstractPlutoDingetjes", "Base64", "BetterFileWatching", "Configurations", "Distributed", "Distributions", "FromFile", "Git", "GitHubActions", "Glob", "HTTP", "JSON", "Logging", "Markdown", "OrderedCollections", "Pkg", "Pluto", "Random", "SHA", "Sockets", "Statistics", "TOML", "TerminalLoggers", "UUIDs"]
+git-tree-sha1 = "aa63b32af7e564c16ea6426213cf6bf74ab36bf1"
+repo-rev = "static-export-1"
+repo-url = "https://github.com/JuliaPluto/PlutoSliderServer.jl.git"
 uuid = "2fc8631c-6f24-4c5b-bca7-cbb509c42db4"
 version = "0.3.25"
 
@@ -502,6 +610,12 @@ git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539"
 uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c"
 version = "0.1.4"
 
+[[deps.QuadGK]]
+deps = ["DataStructures", "LinearAlgebra"]
+git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee"
+uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
+version = "2.8.2"
+
 [[deps.REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
@@ -545,6 +659,18 @@ git-tree-sha1 = "feafdc70b2e6684314e188d95fe66d116de834a7"
 uuid = "295af30f-e4ad-537b-8983-00126c2a3abe"
 version = "3.5.2"
 
+[[deps.Rmath]]
+deps = ["Random", "Rmath_jll"]
+git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b"
+uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
+version = "0.7.1"
+
+[[deps.Rmath_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da"
+uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
+version = "0.4.0+0"
+
 [[deps.SHA]]
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
 version = "0.7.0"
@@ -578,10 +704,22 @@ version = "1.0.3"
 [[deps.Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
+[[deps.SortingAlgorithms]]
+deps = ["DataStructures"]
+git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee"
+uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
+version = "1.1.1"
+
 [[deps.SparseArrays]]
 deps = ["LinearAlgebra", "Random"]
 uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
+[[deps.SpecialFunctions]]
+deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
+git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3"
+uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
+version = "2.3.0"
+
 [[deps.SplittablesBase]]
 deps = ["Setfield", "Test"]
 git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5"
@@ -597,12 +735,34 @@ version = "1.4.0"
 deps = ["LinearAlgebra", "SparseArrays"]
 uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 
+[[deps.StatsAPI]]
+deps = ["LinearAlgebra"]
+git-tree-sha1 = "45a7769a04a3cf80da1c1c7c60caf932e6f4c9f7"
+uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
+version = "1.6.0"
+
+[[deps.StatsBase]]
+deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
+git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4"
+uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
+version = "0.34.0"
+
+[[deps.StatsFuns]]
+deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
+git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a"
+uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
+version = "1.3.0"
+
 [[deps.StringEncodings]]
 deps = ["Libiconv_jll"]
 git-tree-sha1 = "33c0da881af3248dafefb939a21694b97cfece76"
 uuid = "69024149-9ee7-55f6-a4c4-859efe599b68"
 version = "0.3.6"
 
+[[deps.SuiteSparse]]
+deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
+uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
+
 [[deps.TOML]]
 deps = ["Dates"]
 uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"

pluto-deployment-environment/PlutoDeployment.toml

@@ -21,7 +21,4 @@ exclude=[
     "PlutoPages.jl",
 
     # notebooks not interactive
-
-    # don't run homeworks
-    "*/hw*.jl",
 ]