From a296dcc3b7b95e8700e5efbe8d557a9c6e4eac14 Mon Sep 17 00:00:00 2001 From: Michael Goerz Date: Sat, 27 Apr 2024 23:25:13 -0400 Subject: [PATCH] Improve documentation of result object --- docs/make.jl | 15 + docs/src/inventories/ComponentArrays.toml | 193 + docs/src/inventories/Julia.toml | 10953 ++++++++++++++++ docs/src/inventories/RecursiveArrayTools.toml | 76 + docs/src/inventories/TimerOutputs.toml | 88 +- src/result.jl | 25 +- 6 files changed, 11305 insertions(+), 45 deletions(-) create mode 100644 docs/src/inventories/ComponentArrays.toml create mode 100644 docs/src/inventories/Julia.toml create mode 100644 docs/src/inventories/RecursiveArrayTools.toml diff --git a/docs/make.jl b/docs/make.jl index 0f94055..dcb1bda 100644 --- a/docs/make.jl +++ b/docs/make.jl @@ -23,6 +23,11 @@ if endswith(VERSION, "dev") end links = InterLinks( + "Julia" => ( + "https://docs.julialang.org/en/v1/", + "https://docs.julialang.org/en/v1/objects.inv", + joinpath(@__DIR__, "src", "inventories", "Julia.toml"), + ), "TimerOutputs" => ( "https://github.com/KristofferC/TimerOutputs.jl", joinpath(@__DIR__, "src", "inventories", "TimerOutputs.toml") @@ -31,6 +36,16 @@ links = InterLinks( "QuantumControl" => "https://juliaquantumcontrol.github.io/QuantumControl.jl/$DEV_OR_STABLE", "GRAPE" => "https://juliaquantumcontrol.github.io/GRAPE.jl/$DEV_OR_STABLE", "Examples" => "https://juliaquantumcontrol.github.io/QuantumControlExamples.jl/$DEV_OR_STABLE", + "ComponentArrays" => ( + "https://jonniedie.github.io/ComponentArrays.jl/stable/", + "https://jonniedie.github.io/ComponentArrays.jl/stable/objects.inv", + joinpath(@__DIR__, "src", "inventories", "ComponentArrays.toml") + ), + "RecursiveArrayTools" => ( + "https://docs.sciml.ai/RecursiveArrayTools/stable/", + "https://docs.sciml.ai/RecursiveArrayTools/stable/objects.inv", + joinpath(@__DIR__, "src", "inventories", "RecursiveArrayTools.toml") + ), ) println("Starting makedocs") diff --git a/docs/src/inventories/ComponentArrays.toml b/docs/src/inventories/ComponentArrays.toml new file mode 100644 index 0000000..6fc20ae --- /dev/null +++ b/docs/src/inventories/ComponentArrays.toml @@ -0,0 +1,193 @@ +# DocInventory version 1 +project = "ComponentArrays.jl" +version = "0.15.11" + +[[jl.method]] +name = "ComponentArrays.getaxes-Tuple{ComponentArray}" +uri = "api/#ComponentArrays.getaxes-Tuple%7BComponentArray%7D" +[[jl.method]] +name = "ComponentArrays.getdata-Tuple{ComponentArray}" +uri = "api/#ComponentArrays.getdata-Tuple%7BComponentArray%7D" +[[jl.method]] +name = "ComponentArrays.label2index-Tuple{ComponentVector{T, A, Axes} where {T, A, Axes}, Any}" +uri = "api/#ComponentArrays.label2index-Tuple%7BComponentVector%7BT%2C%20A%2C%20Axes%7D%20where%20%7BT%2C%20A%2C%20Axes%7D%2C%20Any%7D" +[[jl.method]] +name = "ComponentArrays.labels-Tuple{ComponentVector{T, A, Axes} where {T, A, Axes}}" +uri = "api/#ComponentArrays.labels-Tuple%7BComponentVector%7BT%2C%20A%2C%20Axes%7D%20where%20%7BT%2C%20A%2C%20Axes%7D%7D" +[[jl.method]] +name = "ComponentArrays.valkeys-Tuple{AbstractAxis}" +uri = "api/#ComponentArrays.valkeys-Tuple%7BAbstractAxis%7D" + +[[jl.type]] +name = "ComponentArrays.Axis" +uri = "api/#$" +[[jl.type]] +name = "ComponentArrays.ComponentArray" +uri = "api/#$" +[[jl.type]] +name = "ComponentArrays.ComponentMatrix" +uri = "api/#$" +[[jl.type]] +name = "ComponentArrays.ComponentVector" +uri = "api/#$" +[[jl.type]] +name = "ComponentArrays.KeepIndex" +uri = "api/#$" +[[jl.type]] +name = "ComponentArrays.LazyArray" +uri = "api/#$" +[[jl.type]] +name = "ComponentArrays.PartitionedAxis" +uri = "api/#$" +[[jl.type]] +name = "ComponentArrays.ShapedAxis" +uri = "api/#$" +[[jl.type]] +name = "ComponentArrays.ViewAxis" +uri = "api/#$" + +[[std.doc]] +dispname = "API" +name = "api" +uri = "api/" +[[std.doc]] +dispname = "Neural ODEs with DiffEqFlux" +name = "examples/DiffEqFlux" +uri = "examples/DiffEqFlux/" +[[std.doc]] +dispname = "ODE with Jacobian" +name = "examples/ODE_jac" +uri = "examples/ODE_jac/" +[[std.doc]] +dispname = "Model Reference Adaptive Control" +name = "examples/adaptive_control" +uri = "examples/adaptive_control/" +[[std.doc]] +dispname = "Home" +name = "index" +uri = "" +[[std.doc]] +dispname = "Indexing Behavior" +name = "indexing_behavior" +uri = "indexing_behavior/" +[[std.doc]] +dispname = "Quick Start" +name = "quickstart" +uri = "quickstart/" +[[std.doc]] +dispname = "Unpacking to StaticArrays" +name = "static_unpack" +uri = "static_unpack/" + +[[std.label]] +dispname = "A sliding block with two different friction models" +name = "A-sliding-block-with-two-different-friction-models" +uri = "examples/coulomb_control/#$" +[[std.label]] +name = "API" +uri = "api/#$" +[[std.label]] +dispname = "Closed-Loop Response" +name = "Closed-Loop-Response" +uri = "examples/coulomb_control/#$" +[[std.label]] +dispname = "Component Functions" +name = "Component-Functions" +uri = "examples/coulomb_control/#$" +[[std.label]] +name = "ComponentArrays.jl" +uri = "#$" +[[std.label]] +dispname = "Control of a sliding block" +name = "Control-of-a-sliding-block" +uri = "examples/coulomb_control/#$" +[[std.label]] +dispname = "Derivative Functions" +name = "Derivative-Functions" +uri = "examples/adaptive_control/#$" +[[std.label]] +name = "Example" +uri = "static_unpack/#$" +[[std.label]] +dispname = "General use" +name = "General-use" +uri = "quickstart/#$" +[[std.label]] +dispname = "Helper Functions" +name = "Helper-Functions" +uri = "examples/adaptive_control/#$" +[[std.label]] +dispname = "Indexing Behavior" +name = "Indexing-Behavior" +uri = "indexing_behavior/#$" +[[std.label]] +dispname = "Indexing with multiple symbols" +name = "Indexing-with-multiple-symbols" +uri = "indexing_behavior/#$" +[[std.label]] +dispname = "Insufficient Excitation and Rohr's Example" +name = "Insufficient-Excitation-and-Rohr's-Example" +uri = "examples/adaptive_control/#Insufficient-Excitation-and-Rohr%27s-Example" +[[std.label]] +dispname = "Laplace Domain Model Specification" +name = "Laplace-Domain-Model-Specification" +uri = "examples/adaptive_control/#$" +[[std.label]] +dispname = "Model Reference Adaptive Control" +name = "Model-Reference-Adaptive-Control" +uri = "examples/adaptive_control/#$" +[[std.label]] +name = "Motivation" +uri = "examples/adaptive_control/#$" +[[std.label]] +dispname = "Neural ODEs with DiffEqFlux" +name = "Neural-ODEs-with-DiffEqFlux" +uri = "examples/DiffEqFlux/#$" +[[std.label]] +dispname = "ODE with Jacobian" +name = "ODE-with-Jacobian" +uri = "examples/ODE_jac/#$" +[[std.label]] +dispname = "Open-Loop Response" +name = "Open-Loop-Response" +uri = "examples/coulomb_control/#$" +[[std.label]] +dispname = "PID feedback control" +name = "PID-feedback-control" +uri = "examples/coulomb_control/#$" +[[std.label]] +dispname = "Problem Setup" +name = "Problem-Setup" +uri = "examples/coulomb_control/#$" +[[std.label]] +dispname = "Quick Start" +name = "Quick-Start" +uri = "quickstart/#$" +[[std.label]] +dispname = "Retaining component labels through index operations" +name = "Retaining-component-labels-through-index-operations" +uri = "indexing_behavior/#$" +[[std.label]] +dispname = "Set Up Simulation" +name = "Set-Up-Simulation" +uri = "examples/adaptive_control/#$" +[[std.label]] +dispname = "Simulation Inputs" +name = "Simulation-Inputs" +uri = "examples/adaptive_control/#$" +[[std.label]] +dispname = "Unmodeled Dynamics" +name = "Unmodeled-Dynamics" +uri = "examples/adaptive_control/#$" +[[std.label]] +dispname = "Unpacking to StaticArrays" +name = "Unpacking-to-StaticArrays" +uri = "static_unpack/#$" +[[std.label]] +dispname = "Views and slices" +name = "Views-and-slices" +uri = "indexing_behavior/#$" +[[std.label]] +dispname = "Why not just have static ComponentArrays?" +name = "Why-not-just-have-static-ComponentArrays?" +uri = "static_unpack/#Why-not-just-have-static-ComponentArrays%3F" diff --git a/docs/src/inventories/Julia.toml b/docs/src/inventories/Julia.toml new file mode 100644 index 0000000..4c8f322 --- /dev/null +++ b/docs/src/inventories/Julia.toml @@ -0,0 +1,10953 @@ +# DocInventory version 1 +project = "The Julia Language" +version = "1.10.2" + +[[jl.constant]] +name = "Base.ARGS" +uri = "base/constants/#$" +[[jl.constant]] +name = "Base.C_NULL" +uri = "base/constants/#$" +[[jl.constant]] +name = "Base.DEPOT_PATH" +uri = "base/constants/#$" +[[jl.constant]] +name = "Base.DL_LOAD_PATH" +uri = "stdlib/Libdl/#$" +[[jl.constant]] +name = "Base.ENDIAN_BOM" +uri = "base/io-network/#$" +[[jl.constant]] +name = "Base.ENV" +uri = "base/base/#$" +[[jl.constant]] +name = "Base.Inf" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.Inf16" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.Inf32" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.Inf64" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.LOAD_PATH" +uri = "base/constants/#$" +[[jl.constant]] +name = "Base.Libc.Libdl.RTLD_NOW" +uri = "stdlib/Libdl/#$" +[[jl.constant]] +name = "Base.Libc.Libdl.dlext" +uri = "stdlib/Libdl/#$" +[[jl.constant]] +name = "Base.MainInclude.ans" +uri = "base/base/#$" +[[jl.constant]] +name = "Base.MainInclude.err" +uri = "base/base/#$" +[[jl.constant]] +name = "Base.MathConstants.catalan" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.MathConstants.eulergamma" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.MathConstants.golden" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.MathConstants.pi" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.MathConstants.ℯ" +uri = "base/numbers/#Base.MathConstants.%E2%84%AF" +[[jl.constant]] +name = "Base.NaN" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.NaN16" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.NaN32" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.NaN64" +uri = "base/numbers/#$" +[[jl.constant]] +name = "Base.Order.Forward" +uri = "base/sort/#$" +[[jl.constant]] +name = "Base.Order.Reverse" +uri = "base/sort/#$" +[[jl.constant]] +name = "Base.PROGRAM_FILE" +uri = "base/constants/#$" +[[jl.constant]] +name = "Base.Rounding.RoundDown" +uri = "base/math/#$" +[[jl.constant]] +name = "Base.Rounding.RoundFromZero" +uri = "base/math/#$" +[[jl.constant]] +name = "Base.Rounding.RoundNearest" +uri = "base/math/#$" +[[jl.constant]] +name = "Base.Rounding.RoundNearestTiesAway" +uri = "base/math/#$" +[[jl.constant]] +name = "Base.Rounding.RoundNearestTiesUp" +uri = "base/math/#$" +[[jl.constant]] +name = "Base.Rounding.RoundToZero" +uri = "base/math/#$" +[[jl.constant]] +name = "Base.Rounding.RoundUp" +uri = "base/math/#$" +[[jl.constant]] +name = "Base.Sort.InsertionSort" +uri = "base/sort/#$" +[[jl.constant]] +name = "Base.Sort.MergeSort" +uri = "base/sort/#$" +[[jl.constant]] +name = "Base.Sort.QuickSort" +uri = "base/sort/#$" +[[jl.constant]] +name = "Base.Sys.ARCH" +uri = "base/constants/#$" +[[jl.constant]] +name = "Base.Sys.BINDIR" +uri = "base/constants/#$" +[[jl.constant]] +name = 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+[[std.label]] +name = "string-interpolation" +uri = "manual/strings/#$" +[[std.label]] +name = "sysimg-multi-versioning" +uri = "devdocs/sysimg/#$" +[[std.label]] +name = "tools" +uri = "manual/performance-tips/#$" +[[std.label]] +name = "using-and-import-with-specific-identifiers,-and-adding-methods" +uri = "manual/modules/#using-and-import-with-specific-identifiers%2C-and-adding-methods" +[[std.label]] +name = "writing-binary-broadcasting-rules" +uri = "manual/interfaces/#$" diff --git a/docs/src/inventories/RecursiveArrayTools.toml b/docs/src/inventories/RecursiveArrayTools.toml new file mode 100644 index 0000000..5eed86d --- /dev/null +++ b/docs/src/inventories/RecursiveArrayTools.toml @@ -0,0 +1,76 @@ +# DocInventory version 1 +project = "RecursiveArrayTools.jl" +version = "3.12.0" + +[[jl.function]] +name = "RecursiveArrayTools.copyat_or_push!" +uri = "recursive_array_functions/#RecursiveArrayTools.copyat_or_push%21" +[[jl.function]] +name = "RecursiveArrayTools.recursivecopy" +uri = "recursive_array_functions/#$" +[[jl.function]] +name = "RecursiveArrayTools.recursivecopy!" +uri = "recursive_array_functions/#RecursiveArrayTools.recursivecopy%21" +[[jl.function]] +name = "RecursiveArrayTools.vecvecapply" +uri = "recursive_array_functions/#$" + +[[jl.type]] +name = "RecursiveArrayTools.ArrayPartition" +uri = "array_types/#$" +[[jl.type]] +name = "RecursiveArrayTools.DiffEqArray" +uri = "array_types/#$" +[[jl.type]] +name = "RecursiveArrayTools.NamedArrayPartition" +uri = "array_types/#$" +[[jl.type]] +name = "RecursiveArrayTools.VectorOfArray" +uri = "array_types/#$" + +[[std.doc]] +dispname = "Recursive Array Types" +name = "array_types" +uri = "array_types/" +[[std.doc]] +dispname = "Home" +name = "index" +uri = "" +[[std.doc]] +dispname = "Recursive Array Functions" +name = "recursive_array_functions" +uri = "recursive_array_functions/" + +[[std.label]] +dispname = "Abstract Types" +name = "Abstract-Types" +uri = "array_types/#$" +[[std.label]] +dispname = "Concrete Types" +name = "Concrete-Types" +uri = "array_types/#$" +[[std.label]] +name = "Contributing" +uri = "#$" +[[std.label]] +dispname = "Function List" +name = "Function-List" +uri = "recursive_array_functions/#$" +[[std.label]] +name = "Installation" +uri = "#$" +[[std.label]] +dispname = "Recursive Array Functions" +name = "Recursive-Array-Functions" +uri = "recursive_array_functions/#$" +[[std.label]] +dispname = "Recursive Array Types" +name = "Recursive-Array-Types" +uri = "array_types/#$" +[[std.label]] +dispname = "RecursiveArrayTools.jl: Arrays of Arrays and Even Deeper" +name = "RecursiveArrayTools.jl:-Arrays-of-Arrays-and-Even-Deeper" +uri = "#RecursiveArrayTools.jl%3A-Arrays-of-Arrays-and-Even-Deeper" +[[std.label]] +name = "Reproducibility" +uri = "#$" diff --git a/docs/src/inventories/TimerOutputs.toml b/docs/src/inventories/TimerOutputs.toml index 60c4071..118f27b 100644 --- a/docs/src/inventories/TimerOutputs.toml +++ b/docs/src/inventories/TimerOutputs.toml @@ -1,84 +1,84 @@ -[Inventory] -format = "DocInventories v0" +# DocInventory version 1 project = "TimerOutputs.jl" version = "0.5.23" +[[jl.function]] +name = "TimerOutputs.print_timer" +uri = "#settings-for-printing" +[[jl.function]] +name = "TimerOutputs.reset_timer!" +uri = "#resetting" + +[[jl.type]] +name = "TimerOutputs.TimerOutput" +uri = "#usage" + [[std.doc]] +dispname = "TimerOutputs" name = "readme" uri = "" -dispname = "TimerOutputs" [[std.label]] -name = "timeroutputs" +dispname = "Acknowledgments" +name = "acknowledgments" uri = "#$" -dispname = "TimerOutputs" [[std.label]] -name = "example-output" +dispname = "Autor" +name = "author" uri = "#$" -dispname = "Example output" [[std.label]] -name = "usage" +dispname = "Default Timer" +name = "default-timer" uri = "#$" -dispname = "Usage" [[std.label]] -name = "settings-for-printing" +dispname = "Example output" +name = "example-output" uri = "#$" -dispname = "Settings for printing" [[std.label]] +dispname = "Flattening" name = "flattening" uri = "#$" -dispname = "Flattening" [[std.label]] -name = "merging" +dispname = "Indexing into a table" +name = "indexing-into-a-table" uri = "#$" -dispname = "Merging" [[std.label]] -name = "resetting" +dispname = "Measuring time consumed outside @timeit blocks" +name = "measuring-time-consumed-outside-timeit-blocks" uri = "#$" -dispname = "Resetting" [[std.label]] -name = "indexing-into-a-table" +dispname = "Merging" +name = "merging" uri = "#$" -dispname = "Indexing into a table" [[std.label]] -name = "querying-data" +dispname = "Overhead" +name = "overhead" uri = "#$" -dispname = "Querying data" [[std.label]] -name = "default-timer" +dispname = "Querying data" +name = "querying-data" uri = "#$" -dispname = "Default Timer" [[std.label]] -name = "measuring-time-consumed-outside-timeit-blocks" +dispname = "Resetting" +name = "resetting" uri = "#$" -dispname = "Measuring time consumed outside @timeit blocks" [[std.label]] -name = "shared-timers" +dispname = "Serialization" +name = "serialization" uri = "#$" -dispname = "Shared Timers" [[std.label]] -name = "serialization" +dispname = "Settings for printing" +name = "settings-for-printing" uri = "#$" -dispname = "Serialization" [[std.label]] -name = "overhead" +dispname = "Shared Timers" +name = "shared-timers" uri = "#$" -dispname = "Overhead" [[std.label]] -name = "author" +dispname = "TimerOutputs" +name = "timeroutputs" uri = "#$" -dispname = "Autor" [[std.label]] -name = "acknowledgments" +dispname = "Usage" +name = "usage" uri = "#$" -dispname = "Acknowledgments" - -[[jl.type]] -name = "TimerOutputs.TimerOutput" -uri = "#usage" -[[jl.function]] -name = "TimerOutputs.print_timer" -uri = "#settings-for-printing" -[[jl.function]] -name = "TimerOutputs.reset_timer!" -uri = "#resetting" diff --git a/src/result.jl b/src/result.jl index b37f141..221dbdf 100644 --- a/src/result.jl +++ b/src/result.jl @@ -3,7 +3,30 @@ using Printf using Dates -"""Result object returned by [`optimize_krotov`](@ref).""" +"""Result object returned by [`optimize_krotov`](@ref). + +# Attributes + +The attributes of a `KrotovResult` object include + +* `iter`: The number of the current iteration +* `J_T`: The value of the final-time functional in the current iteration +* `J_T_prev`: The value of the final-time functional in the previous iteration +* `tlist`: The time grid on which the control are discetized. +* `guess_controls`: A vector of the original control fields (each field + discretized to the points of `tlist`) +* optimized_controls: A vector of the optimized control fileds in the current + iterations +* records: A vector of tuples with values returned by an `info_hook` routine + passed to [`optimize`](@ref) +* converged: A boolean flag on whether the optimization is converged. This + may be set to `true` by a `check_convergence` function. +* message: A message string to explain the reason for convergence. This may be + set by a `check_convergence` function. + +All of the above attributes may be referenced in a `check_convergence` function +passed to [`optimize(problem; method=Krotov)`](@ref QuantumControlBase.optimize(::ControlProblem, ::Val{:Krotov})) +""" mutable struct KrotovResult{STST} tlist::Vector{Float64} iter_start::Int64 # the starting iteration number