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python2 is required
clinsv uses python2 for lumpy calls
lumpy requires numpy pysam
python3 is required to
clinsv uses python3 for pairend_distro-a1.py see: line 460. of clinsv requires numpy
NB I did not check if pairend_distro-a1.py use some python3 specific syntax, except for print
maybee it means that clinsv can rely only in python2 using from future import print
regards
Eric
The text was updated successfully, but these errors were encountered:
Hello,
I noticed in the install from sources documentation, more specifically in install python section.
https://github.com/KCCG/ClinSV/blob/master/INSTALL_b38.md#install-python
python2 is required
clinsv uses python2 for lumpy calls
lumpy requires
numpy pysam
python3 is required to
clinsv uses python3 for
pairend_distro-a1.py
see: line 460. of clinsv requiresnumpy
NB I did not check if
pairend_distro-a1.py
use some python3 specific syntax, except forprint
maybee it means that clinsv can rely only in python2 using
from future import print
regards
Eric
The text was updated successfully, but these errors were encountered: