From c8a6d6dac9d26081e25e11335d2d30374a65d673 Mon Sep 17 00:00:00 2001
From: rlreamy <34109594+rlreamy@users.noreply.github.com>
Date: Fri, 22 Dec 2023 09:36:46 -0500
Subject: [PATCH 1/3] Update RTExpressionDataAllSegmentsRepository.java

Added group by segment to prevent duplicate segments caused by other fixes to show Glom for RP (I think this is what caused the issue)
---
 .../geneExpression/RTExpressionDataAllSegmentsRepository.java  | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/main/java/org/kpmp/geneExpression/RTExpressionDataAllSegmentsRepository.java b/src/main/java/org/kpmp/geneExpression/RTExpressionDataAllSegmentsRepository.java
index f974986..245dcd6 100755
--- a/src/main/java/org/kpmp/geneExpression/RTExpressionDataAllSegmentsRepository.java
+++ b/src/main/java/org/kpmp/geneExpression/RTExpressionDataAllSegmentsRepository.java
@@ -14,7 +14,8 @@ public interface RTExpressionDataAllSegmentsRepository extends CrudRepository<RT
 	@Query(value = "SELECT rts.*, rsv.sample_count, s.segment_name FROM rt_segments rts "
 			+ "LEFT JOIN rt_summary_v rsv ON rts.segment = rsv.segment AND rts.tissue_type = rsv.tissue_type "
 			+ "LEFT JOIN segment s on rts.segment = s.abbreviation "
-			+ "WHERE rts.tissue_type = :tissueType AND rts.gene_symbol = :geneSymbol", nativeQuery = true)
+			+ "WHERE rts.tissue_type = :tissueType AND rts.gene_symbol = :geneSymbol "
+	       		+ "GROUP BY rts.segment", nativeQuery = true)
 	List<RTExpressionDataAllSegments> findByGeneSymbolAndTissueTypeWithCounts(String geneSymbol, String tissueType);
 
 	@Cacheable("rtExpByStructure")

From a7fd5c5a306adcd1f2df6a1b07f6767710e5137f Mon Sep 17 00:00:00 2001
From: rlreamy <34109594+rlreamy@users.noreply.github.com>
Date: Fri, 22 Dec 2023 09:51:14 -0500
Subject: [PATCH 2/3] Update RTExpressionDataGTIRepository.java

Missed the RTGTI repo
---
 .../org/kpmp/geneExpression/RTExpressionDataGTIRepository.java | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/main/java/org/kpmp/geneExpression/RTExpressionDataGTIRepository.java b/src/main/java/org/kpmp/geneExpression/RTExpressionDataGTIRepository.java
index 3b7b4eb..537d584 100755
--- a/src/main/java/org/kpmp/geneExpression/RTExpressionDataGTIRepository.java
+++ b/src/main/java/org/kpmp/geneExpression/RTExpressionDataGTIRepository.java
@@ -13,6 +13,7 @@ public interface RTExpressionDataGTIRepository extends CrudRepository<RTExpressi
 	@Query(value = "SELECT rtg.*, rsv.sample_count, s.segment_name FROM rt_gti rtg "
 			+ "LEFT JOIN rt_summary_v rsv ON rtg.segment = rsv.segment AND rtg.tissue_type = rsv.tissue_type "
 			+ "LEFT JOIN segment s on rtg.segment = s.abbreviation "
-			+ "WHERE rtg.tissue_type = :tissueType AND rtg.gene_symbol = :geneSymbol", nativeQuery = true)
+			+ "WHERE rtg.tissue_type = :tissueType AND rtg.gene_symbol = :geneSymbol " 
+	       		+ "GROUP BY rts.segment", nativeQuery = true)
 	List<RTExpressionDataGTI> findByGeneSymbolAndTissueTypeWithCounts(String geneSymbol, String tissueType);
 }

From 6d903495a52d5c90c48845aca5dc2be49d2ee894 Mon Sep 17 00:00:00 2001
From: rlreamy <34109594+rlreamy@users.noreply.github.com>
Date: Fri, 22 Dec 2023 09:57:35 -0500
Subject: [PATCH 3/3] Update RTExpressionDataGTIRepository.java

---
 .../org/kpmp/geneExpression/RTExpressionDataGTIRepository.java  | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/main/java/org/kpmp/geneExpression/RTExpressionDataGTIRepository.java b/src/main/java/org/kpmp/geneExpression/RTExpressionDataGTIRepository.java
index 537d584..77a97ec 100755
--- a/src/main/java/org/kpmp/geneExpression/RTExpressionDataGTIRepository.java
+++ b/src/main/java/org/kpmp/geneExpression/RTExpressionDataGTIRepository.java
@@ -14,6 +14,6 @@ public interface RTExpressionDataGTIRepository extends CrudRepository<RTExpressi
 			+ "LEFT JOIN rt_summary_v rsv ON rtg.segment = rsv.segment AND rtg.tissue_type = rsv.tissue_type "
 			+ "LEFT JOIN segment s on rtg.segment = s.abbreviation "
 			+ "WHERE rtg.tissue_type = :tissueType AND rtg.gene_symbol = :geneSymbol " 
-	       		+ "GROUP BY rts.segment", nativeQuery = true)
+	       		+ "GROUP BY rtg.segment", nativeQuery = true)
 	List<RTExpressionDataGTI> findByGeneSymbolAndTissueTypeWithCounts(String geneSymbol, String tissueType);
 }