From e9f40f3d435ebd3b9f7a043b42da29ea8575c977 Mon Sep 17 00:00:00 2001 From: Becky Reamy Date: Tue, 20 Feb 2024 15:08:23 -0500 Subject: [PATCH] KPMP-5139: Update text --- src/components/DataViz/DataTypeSelector.js | 4 ++-- .../ExpressionTables/ExpressionXCellType.js | 14 +++++++------- 2 files changed, 9 insertions(+), 9 deletions(-) diff --git a/src/components/DataViz/DataTypeSelector.js b/src/components/DataViz/DataTypeSelector.js index 692ffd81..698fcfb4 100644 --- a/src/components/DataViz/DataTypeSelector.js +++ b/src/components/DataViz/DataTypeSelector.js @@ -187,8 +187,8 @@ class DataTypeSelector extends Component { } getDataTypeInfo = (dataType) => { let copy = { - 'sn': 'This single-nucleus dataset is comprised of Healthy Reference: tumor nephrectomy tissue originating from the KPMP Pilot 1 protocol, living and deceased donor tumor nephrectomy samples, and tissue biopsy samples from Human Biomolecular Atlas Program (HuBMAP) participants; CKD: biopsy samples from the KPMP Main Study protocol participants; and AKI: biopsy samples from the KPMP Main Study protocol participants.', - 'sc': 'This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.', + 'sn': 'This single-nucleus dataset is comprised of Healthy Reference: KPMP HRT Living Donor protocol biopsies, KPMP HRT Percutaneous Nephrolithotomy protocol biopsies, tumor nephrectomy tissue originating from the KPMP Pilot 1 protocol living and deceased donor tumor nephrectomy samples, and tissue biopsy samples from Human Biomolecular Atlas Program (HuBMAP) participants; CKD: biopsy samples from the KPMP Main Study protocol participants; AKI: biopsy samples from the KPMP Main Study protocol participants; and DM-R: biopsy samples from the KPMP Main Study protocol participants.', + 'sc': 'This single-cell dataset is comprised of Healthy Reference: KPMP HRT Living Donor protocol biopsies, KPMP HRT Percutaneous Nephrolithotomy protocol biopsies, and the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.', 'rt': 'This regional transcriptomics dataset is comprised of Healthy Reference: tumor nephrectomy tissue originating from the KPMP Pilot 1 protocol and deceased donor nephrectomy samples, CKD: biopsy samples from the KPMP Main Study protocol participants and biopsy samples from the Diabetic Complications Consortium (DiaComp), and AKI: biopsy samples from the KPMP Main Study protocol participants.', 'rp': 'This regional proteomics dataset is comprised of Healthy Reference: tumor nephrectomy tissue originating from Ohio State University living donor tumor nephrectomy samples, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.' } diff --git a/src/components/ExpressionTables/ExpressionXCellType.js b/src/components/ExpressionTables/ExpressionXCellType.js index 8c6ca9cb..2ed36dd3 100644 --- a/src/components/ExpressionTables/ExpressionXCellType.js +++ b/src/components/ExpressionTables/ExpressionXCellType.js @@ -69,20 +69,20 @@ class ExpressionXCellType extends Component { name: 'cluster', }, { - title: CLUSTER (predicted state), + title: CELL CLUSTER (predicted state), name: 'clusterName', getCellValue: row => this.parseClusterName(row) }, { - title: # CELLS IN
CLUSTER, + title: # CELLS IN
CELL CLUSTER, name: 'cellCount', getCellValue: row => row.cellCount ? row.cellCount : 0 }, { title: MEAN
EXPRESSION - Averaged expression values (logarithmic) for each cluster + Averaged expression values (logarithmic) for each cell cluster , name: 'avgExp', getCellValue: row => formatNumberToPrecision(row.avgExp, 3) @@ -98,7 +98,7 @@ class ExpressionXCellType extends Component { { title: FOLD
CHANGE - Log fold-change of the average expression between this cluster and all others. Positive values indicate that the feature is more highly expressed in this cluster. + Log fold-change of the average expression between this cell cluster and all others. Positive values indicate that the feature is more highly expressed in this cluster. , name: 'foldChange', getCellValue: row => formatNumberToPrecision(row.foldChange, 3) @@ -152,7 +152,7 @@ class ExpressionXCellType extends Component { getColumnBands() { return [ { - title: "CLUSTER VS ALL OTHERS", + title: "CELL CLUSTER VS ALL OTHERS", children: [ { columnName: 'foldChange'}, { columnName: 'pVal' }, @@ -188,7 +188,7 @@ class ExpressionXCellType extends Component { -
{this.props.gene} Expression Comparison across Clusters in {formatTissueType(this.props.tissueType)}
+
{this.props.gene} Expression Comparison across Cell Clusters in {formatTissueType(this.props.tissueType)}
NS = Not Significant
@@ -227,7 +227,7 @@ class ExpressionXCellType extends Component {

- For more information about the cell type, cluster, and state definitions, see the following pre-print: https://www.biorxiv.org/content/10.1101/2021.07.28.454201v1 + For more information about the cell type, cluster, and state definitions, see the following publication: Nature 619, 585–594 (2023)